Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2395

Experiment: Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2392 and Ac3H11_2393 are separated by 262 nucleotidesAc3H11_2393 and Ac3H11_2394 are separated by 95 nucleotidesAc3H11_2394 and Ac3H11_2395 are separated by 260 nucleotidesAc3H11_2395 and Ac3H11_2396 are separated by 116 nucleotides Ac3H11_2392 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 650,093 to 650,779 _2392 Ac3H11_2393 - hypothetical protein, at 651,042 to 651,185 _2393 Ac3H11_2394 - hypothetical protein, at 651,281 to 651,481 _2394 Ac3H11_2395 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 651,742 to 652,749 _2395 Ac3H11_2396 - ABC transporter for glutamine/isoleucine/leucine/phenylalanine/proline/serine/tyrosine, substrate-binding component (from data), at 652,866 to 653,993 _2396 Position (kb) 651 652 653Strain fitness (log2 ratio) -2 -1 0 1 2at 650.777 kb on + strandat 650.777 kb on + strandat 650.777 kb on + strandat 650.777 kb on + strandat 650.777 kb on + strandat 650.777 kb on + strandat 650.778 kb on - strandat 650.778 kb on - strandat 650.778 kb on - strandat 650.778 kb on - strandat 650.830 kb on + strandat 650.831 kb on - strandat 650.831 kb on - strandat 650.831 kb on - strandat 650.880 kb on - strandat 650.880 kb on - strandat 651.000 kb on - strandat 651.093 kb on + strand, within Ac3H11_2393at 651.093 kb on + strand, within Ac3H11_2393at 651.093 kb on + strand, within Ac3H11_2393at 651.094 kb on - strand, within Ac3H11_2393at 651.318 kb on + strand, within Ac3H11_2394at 651.318 kb on + strand, within Ac3H11_2394at 651.319 kb on - strand, within Ac3H11_2394at 651.712 kb on - strandat 651.749 kb on + strandat 651.749 kb on + strandat 651.749 kb on + strandat 651.749 kb on + strandat 651.750 kb on - strandat 651.767 kb on - strandat 651.767 kb on - strandat 652.108 kb on + strand, within Ac3H11_2395at 652.108 kb on + strand, within Ac3H11_2395at 652.109 kb on - strand, within Ac3H11_2395at 652.109 kb on - strand, within Ac3H11_2395at 652.631 kb on - strand, within Ac3H11_2395at 652.648 kb on + strand, within Ac3H11_2395at 652.649 kb on - strandat 652.763 kb on + strandat 652.763 kb on + strandat 652.763 kb on + strandat 652.763 kb on + strandat 652.763 kb on + strandat 652.763 kb on + strandat 652.763 kb on + strandat 652.764 kb on - strandat 652.764 kb on - strandat 652.764 kb on - strandat 652.764 kb on - strandat 652.764 kb on - strandat 652.764 kb on - strandat 652.864 kb on + strandat 652.864 kb on + strandat 652.864 kb on + strandat 652.865 kb on - strandat 652.865 kb on - strandat 652.865 kb on - strandat 652.867 kb on + strandat 652.867 kb on + strandat 652.868 kb on - strandat 652.868 kb on - strandat 652.868 kb on - strandat 652.868 kb on - strandat 652.894 kb on + strandat 652.894 kb on + strandat 652.895 kb on - strandat 652.895 kb on - strandat 652.895 kb on - strandat 652.895 kb on - strandat 652.895 kb on - strandat 652.900 kb on + strandat 652.900 kb on + strandat 652.900 kb on + strandat 652.900 kb on + strandat 652.900 kb on + strandat 652.900 kb on + strandat 652.901 kb on - strandat 652.901 kb on - strandat 652.901 kb on - strandat 652.901 kb on - strandat 652.901 kb on - strandat 652.901 kb on - strandat 652.901 kb on - strandat 652.901 kb on - strandat 652.901 kb on - strandat 652.997 kb on - strand, within Ac3H11_2396at 653.051 kb on + strand, within Ac3H11_2396at 653.051 kb on + strand, within Ac3H11_2396at 653.052 kb on - strand, within Ac3H11_2396at 653.052 kb on - strand, within Ac3H11_2396at 653.052 kb on - strand, within Ac3H11_2396at 653.052 kb on - strand, within Ac3H11_2396at 653.059 kb on + strand, within Ac3H11_2396at 653.059 kb on + strand, within Ac3H11_2396at 653.059 kb on + strand, within Ac3H11_2396at 653.059 kb on + strand, within Ac3H11_2396at 653.060 kb on - strand, within Ac3H11_2396at 653.060 kb on - strand, within Ac3H11_2396at 653.060 kb on - strand, within Ac3H11_2396at 653.060 kb on - strand, within Ac3H11_2396at 653.060 kb on - strand, within Ac3H11_2396at 653.060 kb on - strand, within Ac3H11_2396at 653.065 kb on + strand, within Ac3H11_2396at 653.065 kb on + strand, within Ac3H11_2396at 653.065 kb on + strand, within Ac3H11_2396at 653.065 kb on + strand, within Ac3H11_2396at 653.066 kb on - strand, within Ac3H11_2396at 653.066 kb on - strand, within Ac3H11_2396at 653.066 kb on - strand, within Ac3H11_2396at 653.074 kb on + strand, within Ac3H11_2396at 653.074 kb on + strand, within Ac3H11_2396at 653.074 kb on + strand, within Ac3H11_2396at 653.075 kb on - strand, within Ac3H11_2396at 653.075 kb on - strand, within Ac3H11_2396at 653.075 kb on - strand, within Ac3H11_2396at 653.075 kb on - strand, within Ac3H11_2396at 653.075 kb on - strand, within Ac3H11_2396at 653.075 kb on - strand, within Ac3H11_2396at 653.107 kb on + strand, within Ac3H11_2396at 653.107 kb on + strand, within Ac3H11_2396at 653.107 kb on + strand, within Ac3H11_2396at 653.107 kb on + strand, within Ac3H11_2396at 653.107 kb on + strand, within Ac3H11_2396at 653.108 kb on - strand, within Ac3H11_2396at 653.108 kb on - strand, within Ac3H11_2396at 653.108 kb on - strand, within Ac3H11_2396at 653.108 kb on - strand, within Ac3H11_2396at 653.108 kb on - strand, within Ac3H11_2396at 653.108 kb on - strand, within Ac3H11_2396at 653.108 kb on - strand, within Ac3H11_2396at 653.108 kb on - strand, within Ac3H11_2396at 653.108 kb on - strand, within Ac3H11_2396at 653.245 kb on + strand, within Ac3H11_2396at 653.245 kb on + strand, within Ac3H11_2396at 653.245 kb on + strand, within Ac3H11_2396at 653.246 kb on - strand, within Ac3H11_2396at 653.246 kb on - strand, within Ac3H11_2396at 653.246 kb on - strand, within Ac3H11_2396at 653.318 kb on - strand, within Ac3H11_2396at 653.318 kb on - strand, within Ac3H11_2396at 653.318 kb on - strand, within Ac3H11_2396at 653.318 kb on - strand, within Ac3H11_2396at 653.411 kb on - strand, within Ac3H11_2396at 653.465 kb on - strand, within Ac3H11_2396at 653.472 kb on - strand, within Ac3H11_2396at 653.521 kb on + strand, within Ac3H11_2396at 653.521 kb on + strand, within Ac3H11_2396at 653.521 kb on + strand, within Ac3H11_2396at 653.521 kb on + strand, within Ac3H11_2396at 653.521 kb on + strand, within Ac3H11_2396at 653.521 kb on + strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.522 kb on - strand, within Ac3H11_2396at 653.581 kb on + strand, within Ac3H11_2396at 653.582 kb on - strand, within Ac3H11_2396at 653.647 kb on + strand, within Ac3H11_2396at 653.647 kb on + strand, within Ac3H11_2396at 653.647 kb on + strand, within Ac3H11_2396at 653.647 kb on + strand, within Ac3H11_2396at 653.647 kb on + strand, within Ac3H11_2396at 653.648 kb on - strand, within Ac3H11_2396at 653.648 kb on - strand, within Ac3H11_2396at 653.648 kb on - strand, within Ac3H11_2396at 653.648 kb on - strand, within Ac3H11_2396

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml
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650,777 + +0.7
650,777 + -0.2
650,777 + +1.7
650,777 + -0.1
650,777 + +0.8
650,777 + -1.1
650,778 - -0.5
650,778 - +0.3
650,778 - -0.5
650,778 - -0.7
650,830 + +0.0
650,831 - +0.5
650,831 - +0.4
650,831 - -0.1
650,880 - -0.6
650,880 - +0.4
651,000 - +0.5
651,093 + Ac3H11_2393 0.35 -2.7
651,093 + Ac3H11_2393 0.35 +1.1
651,093 + Ac3H11_2393 0.35 +0.2
651,094 - Ac3H11_2393 0.36 -0.1
651,318 + Ac3H11_2394 0.18 +0.4
651,318 + Ac3H11_2394 0.18 +0.1
651,319 - Ac3H11_2394 0.19 +0.1
651,712 - -1.7
651,749 + +1.3
651,749 + +0.7
651,749 + +0.9
651,749 + -0.9
651,750 - -0.9
651,767 - -0.3
651,767 - -2.2
652,108 + Ac3H11_2395 0.36 -1.9
652,108 + Ac3H11_2395 0.36 -1.6
652,109 - Ac3H11_2395 0.36 -1.3
652,109 - Ac3H11_2395 0.36 -2.2
652,631 - Ac3H11_2395 0.88 -2.2
652,648 + Ac3H11_2395 0.90 -1.6
652,649 - +2.3
652,763 + +0.1
652,763 + -0.8
652,763 + -0.3
652,763 + +0.1
652,763 + +0.3
652,763 + -1.2
652,763 + +0.8
652,764 - +0.0
652,764 - -0.4
652,764 - -0.8
652,764 - -0.3
652,764 - +0.2
652,764 - -1.0
652,864 + +0.4
652,864 + -0.3
652,864 + +0.9
652,865 - -0.2
652,865 - +0.4
652,865 - +0.7
652,867 + +0.4
652,867 + +0.8
652,868 - -0.0
652,868 - +2.1
652,868 - +1.3
652,868 - +1.1
652,894 + -0.3
652,894 + -0.2
652,895 - +0.6
652,895 - -0.6
652,895 - +0.6
652,895 - +0.6
652,895 - +1.0
652,900 + -0.9
652,900 + +0.3
652,900 + +0.4
652,900 + -0.1
652,900 + -0.7
652,900 + +0.5
652,901 - +0.7
652,901 - +0.3
652,901 - +0.1
652,901 - +0.7
652,901 - +0.7
652,901 - -0.2
652,901 - -0.4
652,901 - +0.9
652,901 - -0.0
652,997 - Ac3H11_2396 0.12 +0.4
653,051 + Ac3H11_2396 0.16 +0.4
653,051 + Ac3H11_2396 0.16 +0.8
653,052 - Ac3H11_2396 0.16 +0.3
653,052 - Ac3H11_2396 0.16 -0.5
653,052 - Ac3H11_2396 0.16 +1.3
653,052 - Ac3H11_2396 0.16 -1.1
653,059 + Ac3H11_2396 0.17 +0.3
653,059 + Ac3H11_2396 0.17 -0.2
653,059 + Ac3H11_2396 0.17 +0.7
653,059 + Ac3H11_2396 0.17 +1.0
653,060 - Ac3H11_2396 0.17 -0.3
653,060 - Ac3H11_2396 0.17 +0.1
653,060 - Ac3H11_2396 0.17 -0.3
653,060 - Ac3H11_2396 0.17 -1.0
653,060 - Ac3H11_2396 0.17 -0.1
653,060 - Ac3H11_2396 0.17 +0.7
653,065 + Ac3H11_2396 0.18 +1.5
653,065 + Ac3H11_2396 0.18 -0.8
653,065 + Ac3H11_2396 0.18 -0.5
653,065 + Ac3H11_2396 0.18 -0.0
653,066 - Ac3H11_2396 0.18 -0.1
653,066 - Ac3H11_2396 0.18 -0.0
653,066 - Ac3H11_2396 0.18 -0.4
653,074 + Ac3H11_2396 0.18 +0.1
653,074 + Ac3H11_2396 0.18 +0.6
653,074 + Ac3H11_2396 0.18 +1.7
653,075 - Ac3H11_2396 0.19 +0.7
653,075 - Ac3H11_2396 0.19 -0.8
653,075 - Ac3H11_2396 0.19 -0.0
653,075 - Ac3H11_2396 0.19 +0.6
653,075 - Ac3H11_2396 0.19 -0.1
653,075 - Ac3H11_2396 0.19 +0.1
653,107 + Ac3H11_2396 0.21 -0.2
653,107 + Ac3H11_2396 0.21 +0.3
653,107 + Ac3H11_2396 0.21 -1.8
653,107 + Ac3H11_2396 0.21 -0.7
653,107 + Ac3H11_2396 0.21 +0.1
653,108 - Ac3H11_2396 0.21 +0.4
653,108 - Ac3H11_2396 0.21 -0.2
653,108 - Ac3H11_2396 0.21 -0.2
653,108 - Ac3H11_2396 0.21 -0.3
653,108 - Ac3H11_2396 0.21 -0.5
653,108 - Ac3H11_2396 0.21 +0.2
653,108 - Ac3H11_2396 0.21 +0.1
653,108 - Ac3H11_2396 0.21 -0.3
653,108 - Ac3H11_2396 0.21 +1.1
653,245 + Ac3H11_2396 0.34 +0.4
653,245 + Ac3H11_2396 0.34 +0.5
653,245 + Ac3H11_2396 0.34 +0.1
653,246 - Ac3H11_2396 0.34 +0.4
653,246 - Ac3H11_2396 0.34 +1.0
653,246 - Ac3H11_2396 0.34 -0.2
653,318 - Ac3H11_2396 0.40 +0.4
653,318 - Ac3H11_2396 0.40 +0.8
653,318 - Ac3H11_2396 0.40 -0.2
653,318 - Ac3H11_2396 0.40 -0.4
653,411 - Ac3H11_2396 0.48 +0.8
653,465 - Ac3H11_2396 0.53 -1.3
653,472 - Ac3H11_2396 0.54 +0.2
653,521 + Ac3H11_2396 0.58 -0.7
653,521 + Ac3H11_2396 0.58 -0.4
653,521 + Ac3H11_2396 0.58 +0.4
653,521 + Ac3H11_2396 0.58 -1.1
653,521 + Ac3H11_2396 0.58 -1.1
653,521 + Ac3H11_2396 0.58 +0.2
653,522 - Ac3H11_2396 0.58 -0.2
653,522 - Ac3H11_2396 0.58 +0.5
653,522 - Ac3H11_2396 0.58 +0.5
653,522 - Ac3H11_2396 0.58 -0.2
653,522 - Ac3H11_2396 0.58 +0.7
653,522 - Ac3H11_2396 0.58 -0.5
653,522 - Ac3H11_2396 0.58 -0.6
653,522 - Ac3H11_2396 0.58 -0.1
653,522 - Ac3H11_2396 0.58 +0.5
653,522 - Ac3H11_2396 0.58 -0.5
653,522 - Ac3H11_2396 0.58 +0.4
653,522 - Ac3H11_2396 0.58 +0.4
653,522 - Ac3H11_2396 0.58 +2.1
653,581 + Ac3H11_2396 0.63 +0.4
653,582 - Ac3H11_2396 0.63 +1.4
653,647 + Ac3H11_2396 0.69 -0.3
653,647 + Ac3H11_2396 0.69 +0.1
653,647 + Ac3H11_2396 0.69 -0.3
653,647 + Ac3H11_2396 0.69 +0.3
653,647 + Ac3H11_2396 0.69 -0.1
653,648 - Ac3H11_2396 0.69 +0.2
653,648 - Ac3H11_2396 0.69 -0.7
653,648 - Ac3H11_2396 0.69 +0.4
653,648 - Ac3H11_2396 0.69 +0.0

Or see this region's nucleotide sequence