Experiment: Tetracycline 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2079 and Ac3H11_2080 are separated by 178 nucleotides Ac3H11_2080 and Ac3H11_2081 are separated by 593 nucleotides Ac3H11_2081 and Ac3H11_2082 are separated by 99 nucleotides
Ac3H11_2079 - Membrane protein TerC, possibly involved in tellurium resistance, at 304,898 to 305,584
_2079
Ac3H11_2080 - hypothetical protein, at 305,763 to 305,879
_2080
Ac3H11_2081 - Gluconolactonase (EC 3.1.1.17), at 306,473 to 307,423
_2081
Ac3H11_2082 - Phosphogluconate dehydratase (EC 4.2.1.12), at 307,523 to 309,292
_2082
Position (kb) 306
307
308 Strain fitness (log2 ratio) -2
-1
0
1
2 at 305.576 kb on + strand at 305.577 kb on - strand at 305.577 kb on - strand at 305.577 kb on - strand at 305.577 kb on - strand at 305.577 kb on - strand at 305.577 kb on - strand at 305.585 kb on - strand at 305.585 kb on - strand at 305.600 kb on + strand at 305.600 kb on + strand at 305.600 kb on + strand at 305.600 kb on + strand at 305.600 kb on + strand at 305.600 kb on + strand at 305.601 kb on - strand at 305.601 kb on - strand at 305.665 kb on + strand at 305.665 kb on + strand at 305.666 kb on - strand at 305.666 kb on - strand at 305.666 kb on - strand at 305.693 kb on + strand at 305.693 kb on + strand at 305.693 kb on + strand at 305.693 kb on + strand at 305.693 kb on + strand at 305.694 kb on - strand at 305.703 kb on + strand at 305.704 kb on - strand at 305.704 kb on - strand at 305.840 kb on + strand, within Ac3H11_2080 at 305.840 kb on + strand, within Ac3H11_2080 at 305.841 kb on - strand, within Ac3H11_2080 at 305.841 kb on - strand, within Ac3H11_2080 at 305.841 kb on - strand, within Ac3H11_2080 at 305.841 kb on - strand, within Ac3H11_2080 at 305.858 kb on - strand, within Ac3H11_2080 at 305.858 kb on - strand, within Ac3H11_2080 at 305.858 kb on - strand, within Ac3H11_2080 at 305.870 kb on + strand at 305.870 kb on + strand at 305.870 kb on + strand at 305.870 kb on + strand at 305.871 kb on - strand at 305.871 kb on - strand at 305.871 kb on - strand at 305.871 kb on - strand at 305.871 kb on - strand at 305.871 kb on - strand at 305.926 kb on + strand at 305.927 kb on - strand at 305.948 kb on - strand at 305.958 kb on + strand at 305.958 kb on + strand at 305.958 kb on + strand at 305.958 kb on + strand at 305.958 kb on + strand at 305.958 kb on + strand at 305.958 kb on + strand at 305.958 kb on + strand at 305.959 kb on - strand at 305.959 kb on - strand at 305.959 kb on - strand at 305.959 kb on - strand at 305.959 kb on - strand at 305.966 kb on + strand at 305.966 kb on + strand at 305.966 kb on + strand at 305.967 kb on - strand at 305.967 kb on - strand at 305.967 kb on - strand at 306.072 kb on + strand at 306.073 kb on - strand at 306.076 kb on + strand at 306.076 kb on + strand at 306.076 kb on + strand at 306.076 kb on + strand at 306.076 kb on + strand at 306.076 kb on + strand at 306.076 kb on + strand at 306.077 kb on - strand at 306.077 kb on - strand at 306.077 kb on - strand at 306.077 kb on - strand at 306.077 kb on - strand at 306.077 kb on - strand at 306.164 kb on + strand at 306.164 kb on + strand at 306.164 kb on + strand at 306.164 kb on + strand at 306.164 kb on + strand at 306.164 kb on + strand at 306.164 kb on + strand at 306.164 kb on + strand at 306.164 kb on + strand at 306.164 kb on + strand at 306.165 kb on - strand at 306.165 kb on - strand at 306.165 kb on - strand at 306.165 kb on - strand at 306.165 kb on - strand at 306.165 kb on - strand at 306.165 kb on - strand at 306.165 kb on - strand at 306.221 kb on - strand at 306.272 kb on + strand at 306.272 kb on + strand at 306.272 kb on + strand at 306.272 kb on + strand at 306.272 kb on + strand at 306.272 kb on + strand at 306.273 kb on - strand at 306.273 kb on - strand at 306.273 kb on - strand at 306.304 kb on + strand at 307.469 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml remove 305,576 + -0.7 305,577 - +0.4 305,577 - -0.6 305,577 - -0.7 305,577 - +0.1 305,577 - +0.1 305,577 - +0.3 305,585 - -2.7 305,585 - -0.1 305,600 + +1.2 305,600 + +0.1 305,600 + +0.1 305,600 + -0.0 305,600 + +0.7 305,600 + +0.5 305,601 - -0.3 305,601 - +0.2 305,665 + -0.3 305,665 + +1.0 305,666 - -0.6 305,666 - -1.0 305,666 - +0.1 305,693 + +0.4 305,693 + -0.5 305,693 + +1.9 305,693 + +0.4 305,693 + -1.4 305,694 - -0.2 305,703 + -1.6 305,704 - +0.0 305,704 - +0.3 305,840 + Ac3H11_2080 0.66 +0.3 305,840 + Ac3H11_2080 0.66 +0.4 305,841 - Ac3H11_2080 0.67 +0.7 305,841 - Ac3H11_2080 0.67 +0.7 305,841 - Ac3H11_2080 0.67 -0.2 305,841 - Ac3H11_2080 0.67 -1.4 305,858 - Ac3H11_2080 0.81 -0.3 305,858 - Ac3H11_2080 0.81 +0.4 305,858 - Ac3H11_2080 0.81 -0.1 305,870 + -0.5 305,870 + -0.2 305,870 + +0.5 305,870 + +0.9 305,871 - -0.4 305,871 - +0.5 305,871 - -0.4 305,871 - +1.2 305,871 - -2.5 305,871 - -1.8 305,926 + +0.2 305,927 - +0.5 305,948 - -0.4 305,958 + -0.2 305,958 + +0.1 305,958 + -0.1 305,958 + -0.9 305,958 + +0.7 305,958 + +0.3 305,958 + -0.8 305,958 + +0.0 305,959 - -0.2 305,959 - +0.8 305,959 - -0.1 305,959 - -0.4 305,959 - -0.1 305,966 + -1.3 305,966 + -0.4 305,966 + -0.8 305,967 - -0.4 305,967 - -1.0 305,967 - -0.4 306,072 + -1.5 306,073 - +0.0 306,076 + -1.8 306,076 + -0.6 306,076 + +0.9 306,076 + +0.5 306,076 + -0.4 306,076 + -0.1 306,076 + +0.3 306,077 - -0.4 306,077 - -1.3 306,077 - +0.6 306,077 - -0.2 306,077 - -0.6 306,077 - -0.6 306,164 + +0.1 306,164 + +0.1 306,164 + -0.2 306,164 + -0.2 306,164 + -0.3 306,164 + -0.1 306,164 + +0.9 306,164 + -0.1 306,164 + +1.3 306,164 + +1.2 306,165 - -0.3 306,165 - -0.1 306,165 - -0.5 306,165 - +1.3 306,165 - +0.5 306,165 - -0.1 306,165 - +0.5 306,165 - +1.5 306,221 - +0.9 306,272 + -1.1 306,272 + -0.7 306,272 + -0.5 306,272 + -0.2 306,272 + -1.1 306,272 + -1.7 306,273 - +0.3 306,273 - +0.1 306,273 - +0.2 306,304 + -0.5 307,469 + +0.7
Or see this region's nucleotide sequence