Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1800

Experiment: Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1798 and Ac3H11_1799 are separated by 106 nucleotidesAc3H11_1799 and Ac3H11_1800 are separated by 117 nucleotidesAc3H11_1800 and Ac3H11_1801 are separated by 110 nucleotides Ac3H11_1798 - GTP-binding protein EngA, at 19,086 to 20,408 _1798 Ac3H11_1799 - RNA-binding protein Hfq, at 20,515 to 20,769 _1799 Ac3H11_1800 - GTP-binding protein HflX, at 20,887 to 22,008 _1800 Ac3H11_1801 - HflK protein, at 22,119 to 23,438 _1801 Position (kb) 20 21 22 23Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 20.406 kb on + strandat 20.406 kb on + strandat 20.406 kb on + strandat 20.814 kb on + strandat 20.814 kb on + strandat 20.815 kb on - strandat 20.815 kb on - strandat 20.873 kb on + strandat 20.873 kb on + strandat 20.976 kb on + strandat 20.976 kb on + strandat 20.976 kb on + strandat 20.977 kb on - strandat 20.977 kb on - strandat 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.232 kb on + strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.233 kb on - strand, within Ac3H11_1800at 21.363 kb on + strand, within Ac3H11_1800at 21.363 kb on + strand, within Ac3H11_1800at 21.363 kb on + strand, within Ac3H11_1800at 21.364 kb on - strand, within Ac3H11_1800at 21.364 kb on - strand, within Ac3H11_1800at 21.432 kb on + strand, within Ac3H11_1800at 21.432 kb on + strand, within Ac3H11_1800at 21.433 kb on - strand, within Ac3H11_1800at 21.457 kb on + strand, within Ac3H11_1800at 21.458 kb on - strand, within Ac3H11_1800at 21.458 kb on - strand, within Ac3H11_1800at 21.458 kb on - strand, within Ac3H11_1800at 21.511 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.562 kb on + strand, within Ac3H11_1800at 21.563 kb on - strand, within Ac3H11_1800at 21.563 kb on - strand, within Ac3H11_1800at 21.600 kb on + strand, within Ac3H11_1800at 21.601 kb on - strand, within Ac3H11_1800at 21.612 kb on + strand, within Ac3H11_1800at 21.613 kb on - strand, within Ac3H11_1800at 21.850 kb on + strand, within Ac3H11_1800at 21.850 kb on + strand, within Ac3H11_1800at 21.850 kb on + strand, within Ac3H11_1800at 21.850 kb on + strand, within Ac3H11_1800at 21.851 kb on - strand, within Ac3H11_1800at 21.851 kb on - strand, within Ac3H11_1800at 21.851 kb on - strand, within Ac3H11_1800at 21.851 kb on - strand, within Ac3H11_1800at 22.084 kb on + strandat 22.084 kb on + strandat 22.084 kb on + strandat 22.085 kb on - strandat 22.109 kb on + strandat 22.109 kb on + strandat 22.109 kb on + strandat 22.110 kb on - strandat 22.110 kb on - strandat 22.503 kb on + strand, within Ac3H11_1801at 22.503 kb on + strand, within Ac3H11_1801at 22.503 kb on + strand, within Ac3H11_1801at 22.504 kb on - strand, within Ac3H11_1801at 22.504 kb on - strand, within Ac3H11_1801at 22.504 kb on - strand, within Ac3H11_1801at 22.696 kb on - strand, within Ac3H11_1801at 22.881 kb on + strand, within Ac3H11_1801at 22.881 kb on + strand, within Ac3H11_1801at 22.881 kb on + strand, within Ac3H11_1801at 22.882 kb on - strand, within Ac3H11_1801

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml
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20,406 + -0.6
20,406 + -0.6
20,406 + +0.6
20,814 + -0.7
20,814 + +0.9
20,815 - +0.2
20,815 - -0.2
20,873 + +0.9
20,873 + +0.0
20,976 + -1.2
20,976 + -0.1
20,976 + +0.0
20,977 - +0.8
20,977 - -0.6
21,232 + Ac3H11_1800 0.31 -0.9
21,232 + Ac3H11_1800 0.31 -0.7
21,232 + Ac3H11_1800 0.31 -0.2
21,232 + Ac3H11_1800 0.31 -1.9
21,232 + Ac3H11_1800 0.31 -0.1
21,232 + Ac3H11_1800 0.31 -0.2
21,232 + Ac3H11_1800 0.31 -0.6
21,232 + Ac3H11_1800 0.31 -0.5
21,233 - Ac3H11_1800 0.31 -0.1
21,233 - Ac3H11_1800 0.31 +0.7
21,233 - Ac3H11_1800 0.31 +0.0
21,233 - Ac3H11_1800 0.31 -0.1
21,233 - Ac3H11_1800 0.31 -1.9
21,233 - Ac3H11_1800 0.31 -0.8
21,233 - Ac3H11_1800 0.31 +0.4
21,233 - Ac3H11_1800 0.31 -1.3
21,233 - Ac3H11_1800 0.31 +0.4
21,233 - Ac3H11_1800 0.31 -0.4
21,363 + Ac3H11_1800 0.42 +0.6
21,363 + Ac3H11_1800 0.42 +0.1
21,363 + Ac3H11_1800 0.42 +1.6
21,364 - Ac3H11_1800 0.43 -1.8
21,364 - Ac3H11_1800 0.43 -0.6
21,432 + Ac3H11_1800 0.49 +0.1
21,432 + Ac3H11_1800 0.49 -0.2
21,433 - Ac3H11_1800 0.49 +1.2
21,457 + Ac3H11_1800 0.51 -0.4
21,458 - Ac3H11_1800 0.51 -1.5
21,458 - Ac3H11_1800 0.51 -0.8
21,458 - Ac3H11_1800 0.51 -0.1
21,511 + Ac3H11_1800 0.56 +0.8
21,562 + Ac3H11_1800 0.60 +0.1
21,562 + Ac3H11_1800 0.60 +1.5
21,562 + Ac3H11_1800 0.60 +0.1
21,562 + Ac3H11_1800 0.60 -1.3
21,563 - Ac3H11_1800 0.60 -2.1
21,563 - Ac3H11_1800 0.60 +0.2
21,600 + Ac3H11_1800 0.64 +1.0
21,601 - Ac3H11_1800 0.64 +0.6
21,612 + Ac3H11_1800 0.65 -0.6
21,613 - Ac3H11_1800 0.65 -0.8
21,850 + Ac3H11_1800 0.86 -0.6
21,850 + Ac3H11_1800 0.86 +2.3
21,850 + Ac3H11_1800 0.86 +0.6
21,850 + Ac3H11_1800 0.86 -0.6
21,851 - Ac3H11_1800 0.86 -0.7
21,851 - Ac3H11_1800 0.86 -0.8
21,851 - Ac3H11_1800 0.86 +0.6
21,851 - Ac3H11_1800 0.86 +0.4
22,084 + -1.1
22,084 + -2.2
22,084 + -1.4
22,085 - -2.6
22,109 + -1.0
22,109 + -1.3
22,109 + -1.8
22,110 - -1.5
22,110 - +1.4
22,503 + Ac3H11_1801 0.29 -2.1
22,503 + Ac3H11_1801 0.29 -3.0
22,503 + Ac3H11_1801 0.29 -1.2
22,504 - Ac3H11_1801 0.29 -0.5
22,504 - Ac3H11_1801 0.29 -2.6
22,504 - Ac3H11_1801 0.29 -2.2
22,696 - Ac3H11_1801 0.44 -2.0
22,881 + Ac3H11_1801 0.58 -2.9
22,881 + Ac3H11_1801 0.58 +0.8
22,881 + Ac3H11_1801 0.58 -2.2
22,882 - Ac3H11_1801 0.58 +2.4

Or see this region's nucleotide sequence