Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1045

Experiment: Tetracycline 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_937 and Ac3H11_1045 are separated by 85 nucleotidesAc3H11_1045 and Ac3H11_1046 are separated by 61 nucleotidesAc3H11_1046 and Ac3H11_1047 are separated by 181 nucleotidesAc3H11_1047 and Ac3H11_1048 are separated by 157 nucleotidesAc3H11_1048 and Ac3H11_938 are separated by 67 nucleotides Ac3H11_937 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 54,968 to 57,400 _937 Ac3H11_1045 - tRNA-Gly-GCC, at 57,486 to 57,558 _1045 Ac3H11_1046 - tRNA-Cys-GCA, at 57,620 to 57,690 _1046 Ac3H11_1047 - tRNA-Gly-GCC, at 57,872 to 57,944 _1047 Ac3H11_1048 - tRNA-Leu-TAA, at 58,102 to 58,191 _1048 Ac3H11_938 - FIG00582348: hypothetical protein, at 58,259 to 58,843 _938 Position (kb) 57 58Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.492 kb on + strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.493 kb on - strand, within Ac3H11_937at 56.579 kb on + strand, within Ac3H11_937at 56.580 kb on - strand, within Ac3H11_937at 56.580 kb on - strand, within Ac3H11_937at 56.582 kb on + strand, within Ac3H11_937at 56.582 kb on + strand, within Ac3H11_937at 56.582 kb on + strand, within Ac3H11_937at 56.582 kb on + strand, within Ac3H11_937at 56.582 kb on + strand, within Ac3H11_937at 56.582 kb on + strand, within Ac3H11_937at 56.583 kb on - strand, within Ac3H11_937at 56.583 kb on - strand, within Ac3H11_937at 56.729 kb on + strand, within Ac3H11_937at 56.729 kb on + strand, within Ac3H11_937at 56.729 kb on + strand, within Ac3H11_937at 56.729 kb on + strand, within Ac3H11_937at 56.729 kb on + strand, within Ac3H11_937at 56.729 kb on + strand, within Ac3H11_937at 56.729 kb on + strand, within Ac3H11_937at 56.729 kb on + strand, within Ac3H11_937at 56.729 kb on + strand, within Ac3H11_937at 56.730 kb on - strand, within Ac3H11_937at 56.730 kb on - strand, within Ac3H11_937at 56.730 kb on - strand, within Ac3H11_937at 56.730 kb on - strand, within Ac3H11_937at 56.735 kb on + strand, within Ac3H11_937at 56.735 kb on + strand, within Ac3H11_937at 56.735 kb on + strand, within Ac3H11_937at 56.735 kb on + strand, within Ac3H11_937at 56.735 kb on + strand, within Ac3H11_937at 56.735 kb on + strand, within Ac3H11_937at 56.735 kb on + strand, within Ac3H11_937at 56.735 kb on + strand, within Ac3H11_937at 56.735 kb on + strand, within Ac3H11_937at 56.736 kb on - strand, within Ac3H11_937at 56.736 kb on - strand, within Ac3H11_937at 56.736 kb on - strand, within Ac3H11_937at 56.736 kb on - strand, within Ac3H11_937at 56.736 kb on - strand, within Ac3H11_937at 56.736 kb on - strand, within Ac3H11_937at 56.736 kb on - strand, within Ac3H11_937at 56.736 kb on - strand, within Ac3H11_937at 57.035 kb on - strand, within Ac3H11_937at 57.035 kb on - strand, within Ac3H11_937at 57.463 kb on + strandat 57.470 kb on + strandat 57.705 kb on + strandat 57.705 kb on + strandat 57.705 kb on + strandat 57.764 kb on + strandat 57.764 kb on + strandat 57.764 kb on + strandat 57.855 kb on + strandat 57.966 kb on + strandat 57.966 kb on + strandat 57.966 kb on + strandat 57.966 kb on + strandat 57.966 kb on + strandat 57.966 kb on + strandat 57.966 kb on + strandat 58.196 kb on + strandat 58.217 kb on + strandat 58.217 kb on + strandat 58.218 kb on - strandat 58.218 kb on - strandat 58.218 kb on - strandat 58.218 kb on - strandat 58.316 kb on + strandat 58.316 kb on + strandat 58.358 kb on + strand, within Ac3H11_938at 58.359 kb on - strand, within Ac3H11_938at 58.359 kb on - strand, within Ac3H11_938at 58.359 kb on - strand, within Ac3H11_938at 58.517 kb on + strand, within Ac3H11_938at 58.517 kb on + strand, within Ac3H11_938at 58.518 kb on - strand, within Ac3H11_938at 58.518 kb on - strand, within Ac3H11_938

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Per-strain Table

Position Strand Gene LocusTag Fraction Tetracycline 0.0001 mg/ml
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56,492 + Ac3H11_937 0.63 -2.9
56,492 + Ac3H11_937 0.63 -1.6
56,492 + Ac3H11_937 0.63 -0.5
56,492 + Ac3H11_937 0.63 -2.4
56,492 + Ac3H11_937 0.63 -2.4
56,492 + Ac3H11_937 0.63 -1.3
56,492 + Ac3H11_937 0.63 -3.6
56,492 + Ac3H11_937 0.63 -2.4
56,492 + Ac3H11_937 0.63 -2.2
56,492 + Ac3H11_937 0.63 -0.4
56,492 + Ac3H11_937 0.63 -2.6
56,493 - Ac3H11_937 0.63 -1.1
56,493 - Ac3H11_937 0.63 -1.4
56,493 - Ac3H11_937 0.63 -2.4
56,493 - Ac3H11_937 0.63 +0.2
56,493 - Ac3H11_937 0.63 -2.8
56,493 - Ac3H11_937 0.63 -1.2
56,493 - Ac3H11_937 0.63 -4.0
56,493 - Ac3H11_937 0.63 -1.3
56,493 - Ac3H11_937 0.63 -0.3
56,493 - Ac3H11_937 0.63 -1.8
56,493 - Ac3H11_937 0.63 -3.2
56,579 + Ac3H11_937 0.66 -0.7
56,580 - Ac3H11_937 0.66 -2.1
56,580 - Ac3H11_937 0.66 -1.2
56,582 + Ac3H11_937 0.66 -2.4
56,582 + Ac3H11_937 0.66 -1.8
56,582 + Ac3H11_937 0.66 -2.6
56,582 + Ac3H11_937 0.66 -0.1
56,582 + Ac3H11_937 0.66 -0.8
56,582 + Ac3H11_937 0.66 -1.8
56,583 - Ac3H11_937 0.66 -2.9
56,583 - Ac3H11_937 0.66 -2.4
56,729 + Ac3H11_937 0.72 +0.2
56,729 + Ac3H11_937 0.72 -2.8
56,729 + Ac3H11_937 0.72 -2.9
56,729 + Ac3H11_937 0.72 -3.2
56,729 + Ac3H11_937 0.72 -1.6
56,729 + Ac3H11_937 0.72 -1.3
56,729 + Ac3H11_937 0.72 -0.2
56,729 + Ac3H11_937 0.72 +0.1
56,729 + Ac3H11_937 0.72 -2.5
56,730 - Ac3H11_937 0.72 -2.4
56,730 - Ac3H11_937 0.72 -0.6
56,730 - Ac3H11_937 0.72 -0.3
56,730 - Ac3H11_937 0.72 +0.2
56,735 + Ac3H11_937 0.73 +1.1
56,735 + Ac3H11_937 0.73 -2.2
56,735 + Ac3H11_937 0.73 -1.6
56,735 + Ac3H11_937 0.73 -2.2
56,735 + Ac3H11_937 0.73 -1.4
56,735 + Ac3H11_937 0.73 -3.1
56,735 + Ac3H11_937 0.73 -1.1
56,735 + Ac3H11_937 0.73 -3.8
56,735 + Ac3H11_937 0.73 -2.0
56,736 - Ac3H11_937 0.73 -0.8
56,736 - Ac3H11_937 0.73 -0.7
56,736 - Ac3H11_937 0.73 -3.1
56,736 - Ac3H11_937 0.73 -3.8
56,736 - Ac3H11_937 0.73 -2.0
56,736 - Ac3H11_937 0.73 -1.0
56,736 - Ac3H11_937 0.73 -0.4
56,736 - Ac3H11_937 0.73 -1.8
57,035 - Ac3H11_937 0.85 -1.6
57,035 - Ac3H11_937 0.85 -1.2
57,463 + -0.9
57,470 + +2.2
57,705 + -0.2
57,705 + -0.2
57,705 + -0.1
57,764 + -1.6
57,764 + +0.0
57,764 + +0.3
57,855 + -0.2
57,966 + +0.1
57,966 + +0.5
57,966 + -0.4
57,966 + +0.4
57,966 + -0.1
57,966 + -0.8
57,966 + +0.9
58,196 + +0.1
58,217 + -0.1
58,217 + +0.9
58,218 - -1.0
58,218 - -0.3
58,218 - -0.6
58,218 - +0.2
58,316 + +0.4
58,316 + +1.4
58,358 + Ac3H11_938 0.17 -1.0
58,359 - Ac3H11_938 0.17 +0.1
58,359 - Ac3H11_938 0.17 -0.1
58,359 - Ac3H11_938 0.17 -0.7
58,517 + Ac3H11_938 0.44 +0.0
58,517 + Ac3H11_938 0.44 +0.3
58,518 - Ac3H11_938 0.44 -0.2
58,518 - Ac3H11_938 0.44 -0.7

Or see this region's nucleotide sequence