Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS30780

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS30775 and AZOBR_RS30780 are separated by 31 nucleotidesAZOBR_RS30780 and AZOBR_RS30785 are separated by 5 nucleotidesAZOBR_RS30785 and AZOBR_RS30790 overlap by 4 nucleotides AZOBR_RS30775: AZOBR_RS30775 - agmatinase, at 265,114 to 266,169 _RS30775 AZOBR_RS30780: AZOBR_RS30780 - spermidine/putrescine ABC transporter permease, at 266,201 to 266,995 _RS30780 AZOBR_RS30785: AZOBR_RS30785 - ABC transporter permease, at 267,001 to 267,855 _RS30785 AZOBR_RS30790: AZOBR_RS30790 - ABC transporter ATP-binding protein, at 267,852 to 268,913 _RS30790 Position (kb) 266 267Strain fitness (log2 ratio) -2 -1 0 1 2at 265.214 kb on + strandat 265.373 kb on + strand, within AZOBR_RS30775at 265.373 kb on + strand, within AZOBR_RS30775at 265.374 kb on - strand, within AZOBR_RS30775at 265.374 kb on - strand, within AZOBR_RS30775at 265.475 kb on + strand, within AZOBR_RS30775at 265.475 kb on + strand, within AZOBR_RS30775at 265.475 kb on + strand, within AZOBR_RS30775at 265.476 kb on - strand, within AZOBR_RS30775at 265.476 kb on - strand, within AZOBR_RS30775at 265.682 kb on + strand, within AZOBR_RS30775at 265.745 kb on + strand, within AZOBR_RS30775at 265.745 kb on + strand, within AZOBR_RS30775at 265.745 kb on + strand, within AZOBR_RS30775at 265.746 kb on - strand, within AZOBR_RS30775at 265.746 kb on - strand, within AZOBR_RS30775at 265.863 kb on - strand, within AZOBR_RS30775at 266.129 kb on + strandat 266.129 kb on + strandat 266.130 kb on - strandat 266.322 kb on + strand, within AZOBR_RS30780at 266.322 kb on + strand, within AZOBR_RS30780at 266.322 kb on + strand, within AZOBR_RS30780at 266.322 kb on + strand, within AZOBR_RS30780at 266.388 kb on + strand, within AZOBR_RS30780at 266.388 kb on + strand, within AZOBR_RS30780at 266.389 kb on - strand, within AZOBR_RS30780at 266.389 kb on - strand, within AZOBR_RS30780at 266.389 kb on - strand, within AZOBR_RS30780at 266.389 kb on - strand, within AZOBR_RS30780at 266.400 kb on + strand, within AZOBR_RS30780at 266.400 kb on + strand, within AZOBR_RS30780at 266.400 kb on + strand, within AZOBR_RS30780at 266.401 kb on - strand, within AZOBR_RS30780at 266.448 kb on + strand, within AZOBR_RS30780at 266.449 kb on - strand, within AZOBR_RS30780at 266.449 kb on - strand, within AZOBR_RS30780at 266.449 kb on - strand, within AZOBR_RS30780at 266.526 kb on + strand, within AZOBR_RS30780at 266.526 kb on + strand, within AZOBR_RS30780at 266.527 kb on - strand, within AZOBR_RS30780at 266.527 kb on - strand, within AZOBR_RS30780at 266.859 kb on + strand, within AZOBR_RS30780at 266.860 kb on - strand, within AZOBR_RS30780at 267.110 kb on + strand, within AZOBR_RS30785at 267.110 kb on + strand, within AZOBR_RS30785at 267.182 kb on + strand, within AZOBR_RS30785at 267.183 kb on - strand, within AZOBR_RS30785at 267.312 kb on - strand, within AZOBR_RS30785at 267.339 kb on - strand, within AZOBR_RS30785at 267.371 kb on + strand, within AZOBR_RS30785at 267.372 kb on - strand, within AZOBR_RS30785at 267.372 kb on - strand, within AZOBR_RS30785at 267.372 kb on - strandat 267.585 kb on - strand, within AZOBR_RS30785at 267.585 kb on - strand, within AZOBR_RS30785at 267.689 kb on + strand, within AZOBR_RS30785at 267.689 kb on + strand, within AZOBR_RS30785at 267.690 kb on - strand, within AZOBR_RS30785at 267.690 kb on - strandat 267.716 kb on + strand, within AZOBR_RS30785

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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265,214 + -2.2
265,373 + AZOBR_RS30775 0.25 +0.1
265,373 + AZOBR_RS30775 0.25 -0.2
265,374 - AZOBR_RS30775 0.25 -0.6
265,374 - AZOBR_RS30775 0.25 +0.2
265,475 + AZOBR_RS30775 0.34 +2.3
265,475 + AZOBR_RS30775 0.34 +0.5
265,475 + AZOBR_RS30775 0.34 +0.0
265,476 - AZOBR_RS30775 0.34 +0.3
265,476 - AZOBR_RS30775 0.34 +0.4
265,682 + AZOBR_RS30775 0.54 +0.3
265,745 + AZOBR_RS30775 0.60 -0.5
265,745 + AZOBR_RS30775 0.60 +0.2
265,745 + AZOBR_RS30775 0.60 +0.0
265,746 - AZOBR_RS30775 0.60 +0.0
265,746 - AZOBR_RS30775 0.60 +0.6
265,863 - AZOBR_RS30775 0.71 +0.4
266,129 + +0.4
266,129 + -0.2
266,130 - +0.9
266,322 + AZOBR_RS30780 0.15 +0.3
266,322 + AZOBR_RS30780 0.15 +0.3
266,322 + AZOBR_RS30780 0.15 +0.7
266,322 + AZOBR_RS30780 0.15 +0.5
266,388 + AZOBR_RS30780 0.24 +2.2
266,388 + AZOBR_RS30780 0.24 +0.1
266,389 - AZOBR_RS30780 0.24 +0.5
266,389 - AZOBR_RS30780 0.24 +0.0
266,389 - AZOBR_RS30780 0.24 +1.0
266,389 - AZOBR_RS30780 0.24 +0.8
266,400 + AZOBR_RS30780 0.25 +0.2
266,400 + AZOBR_RS30780 0.25 +0.0
266,400 + AZOBR_RS30780 0.25 +0.2
266,401 - AZOBR_RS30780 0.25 -1.0
266,448 + AZOBR_RS30780 0.31 +0.1
266,449 - AZOBR_RS30780 0.31 +1.4
266,449 - AZOBR_RS30780 0.31 +0.3
266,449 - AZOBR_RS30780 0.31 +0.3
266,526 + AZOBR_RS30780 0.41 +0.0
266,526 + AZOBR_RS30780 0.41 -0.4
266,527 - AZOBR_RS30780 0.41 +0.6
266,527 - AZOBR_RS30780 0.41 -0.9
266,859 + AZOBR_RS30780 0.83 -1.3
266,860 - AZOBR_RS30780 0.83 +0.0
267,110 + AZOBR_RS30785 0.13 +0.3
267,110 + AZOBR_RS30785 0.13 +1.3
267,182 + AZOBR_RS30785 0.21 +0.5
267,183 - AZOBR_RS30785 0.21 -0.6
267,312 - AZOBR_RS30785 0.36 +0.2
267,339 - AZOBR_RS30785 0.40 -0.0
267,371 + AZOBR_RS30785 0.43 -0.1
267,372 - AZOBR_RS30785 0.43 +0.7
267,372 - AZOBR_RS30785 0.43 +0.4
267,372 - -1.6
267,585 - AZOBR_RS30785 0.68 -0.1
267,585 - AZOBR_RS30785 0.68 -0.0
267,689 + AZOBR_RS30785 0.80 +0.2
267,689 + AZOBR_RS30785 0.80 +0.3
267,690 - AZOBR_RS30785 0.81 -2.2
267,690 - +1.0
267,716 + AZOBR_RS30785 0.84 -1.4

Or see this region's nucleotide sequence