Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09205

Experiment: L-Lysine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09195 and AZOBR_RS09200 are separated by 22 nucleotidesAZOBR_RS09200 and AZOBR_RS09205 are separated by 137 nucleotidesAZOBR_RS09205 and AZOBR_RS09210 overlap by 4 nucleotidesAZOBR_RS09210 and AZOBR_RS09215 are separated by 111 nucleotides AZOBR_RS09195: AZOBR_RS09195 - histidine kinase, at 1,919,129 to 1,920,178 _RS09195 AZOBR_RS09200: AZOBR_RS09200 - response regulator, at 1,920,201 to 1,920,932 _RS09200 AZOBR_RS09205: AZOBR_RS09205 - hypothetical protein, at 1,921,070 to 1,922,644 _RS09205 AZOBR_RS09210: AZOBR_RS09210 - ABC transporter, at 1,922,641 to 1,923,453 _RS09210 AZOBR_RS09215: AZOBR_RS09215 - cell division protein FtsH, at 1,923,565 to 1,925,343 _RS09215 Position (kb) 1921 1922 1923Strain fitness (log2 ratio) -1 0 1at 1920.232 kb on + strandat 1920.232 kb on + strandat 1920.232 kb on + strandat 1920.233 kb on - strandat 1920.960 kb on + strandat 1920.961 kb on - strandat 1920.989 kb on + strandat 1920.989 kb on + strandat 1920.990 kb on - strandat 1921.049 kb on - strandat 1921.049 kb on - strandat 1921.067 kb on + strandat 1921.067 kb on + strandat 1921.326 kb on + strand, within AZOBR_RS09205at 1921.327 kb on - strand, within AZOBR_RS09205at 1921.327 kb on - strand, within AZOBR_RS09205at 1921.477 kb on - strand, within AZOBR_RS09205at 1921.755 kb on + strand, within AZOBR_RS09205at 1921.756 kb on - strand, within AZOBR_RS09205at 1921.756 kb on - strand, within AZOBR_RS09205at 1921.756 kb on - strand, within AZOBR_RS09205at 1921.758 kb on + strand, within AZOBR_RS09205at 1921.758 kb on + strand, within AZOBR_RS09205at 1921.758 kb on + strand, within AZOBR_RS09205at 1921.758 kb on + strandat 1921.758 kb on + strand, within AZOBR_RS09205at 1921.758 kb on + strand, within AZOBR_RS09205at 1921.759 kb on - strand, within AZOBR_RS09205at 1921.759 kb on - strand, within AZOBR_RS09205at 1921.759 kb on - strand, within AZOBR_RS09205at 1921.869 kb on + strand, within AZOBR_RS09205at 1921.870 kb on - strand, within AZOBR_RS09205at 1921.954 kb on - strand, within AZOBR_RS09205at 1922.040 kb on + strand, within AZOBR_RS09205at 1922.041 kb on - strand, within AZOBR_RS09205at 1922.768 kb on + strand, within AZOBR_RS09210at 1922.978 kb on + strand, within AZOBR_RS09210at 1922.978 kb on + strand, within AZOBR_RS09210at 1922.979 kb on - strand, within AZOBR_RS09210at 1922.979 kb on - strand, within AZOBR_RS09210at 1922.985 kb on - strand, within AZOBR_RS09210at 1923.029 kb on + strand, within AZOBR_RS09210at 1923.029 kb on + strand, within AZOBR_RS09210at 1923.030 kb on - strand, within AZOBR_RS09210at 1923.030 kb on - strand, within AZOBR_RS09210at 1923.179 kb on + strand, within AZOBR_RS09210at 1923.179 kb on + strand, within AZOBR_RS09210at 1923.180 kb on - strand, within AZOBR_RS09210at 1923.180 kb on - strand, within AZOBR_RS09210at 1923.287 kb on + strand, within AZOBR_RS09210at 1923.287 kb on + strand, within AZOBR_RS09210at 1923.425 kb on - strandat 1923.512 kb on + strandat 1923.512 kb on + strandat 1923.512 kb on + strandat 1923.512 kb on + strandat 1923.520 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lysine (N)
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1,920,232 + -0.1
1,920,232 + +0.4
1,920,232 + +0.6
1,920,233 - +0.3
1,920,960 + +0.1
1,920,961 - +0.2
1,920,989 + +0.3
1,920,989 + +0.2
1,920,990 - +0.1
1,921,049 - +0.8
1,921,049 - -0.3
1,921,067 + -0.4
1,921,067 + +0.8
1,921,326 + AZOBR_RS09205 0.16 +1.0
1,921,327 - AZOBR_RS09205 0.16 +0.5
1,921,327 - AZOBR_RS09205 0.16 +0.6
1,921,477 - AZOBR_RS09205 0.26 -0.1
1,921,755 + AZOBR_RS09205 0.43 +0.2
1,921,756 - AZOBR_RS09205 0.44 +0.3
1,921,756 - AZOBR_RS09205 0.44 -0.0
1,921,756 - AZOBR_RS09205 0.44 -0.1
1,921,758 + AZOBR_RS09205 0.44 -1.5
1,921,758 + AZOBR_RS09205 0.44 +0.4
1,921,758 + AZOBR_RS09205 0.44 +0.3
1,921,758 + +0.8
1,921,758 + AZOBR_RS09205 0.44 +0.1
1,921,758 + AZOBR_RS09205 0.44 -0.1
1,921,759 - AZOBR_RS09205 0.44 +0.1
1,921,759 - AZOBR_RS09205 0.44 -0.5
1,921,759 - AZOBR_RS09205 0.44 +0.5
1,921,869 + AZOBR_RS09205 0.51 +0.6
1,921,870 - AZOBR_RS09205 0.51 -0.1
1,921,954 - AZOBR_RS09205 0.56 +0.2
1,922,040 + AZOBR_RS09205 0.62 -0.5
1,922,041 - AZOBR_RS09205 0.62 -0.2
1,922,768 + AZOBR_RS09210 0.16 +0.2
1,922,978 + AZOBR_RS09210 0.41 +0.3
1,922,978 + AZOBR_RS09210 0.41 +0.8
1,922,979 - AZOBR_RS09210 0.42 -0.7
1,922,979 - AZOBR_RS09210 0.42 +0.3
1,922,985 - AZOBR_RS09210 0.42 +0.3
1,923,029 + AZOBR_RS09210 0.48 +0.1
1,923,029 + AZOBR_RS09210 0.48 +0.8
1,923,030 - AZOBR_RS09210 0.48 -0.0
1,923,030 - AZOBR_RS09210 0.48 +0.0
1,923,179 + AZOBR_RS09210 0.66 +0.7
1,923,179 + AZOBR_RS09210 0.66 +0.4
1,923,180 - AZOBR_RS09210 0.66 -0.2
1,923,180 - AZOBR_RS09210 0.66 -0.2
1,923,287 + AZOBR_RS09210 0.79 +0.4
1,923,287 + AZOBR_RS09210 0.79 -0.2
1,923,425 - -0.8
1,923,512 + -0.2
1,923,512 + -0.1
1,923,512 + -0.3
1,923,512 + +0.6
1,923,520 + +1.0

Or see this region's nucleotide sequence