Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_24410

Experiment: Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_24400 and AO353_24405 are separated by 52 nucleotidesAO353_24405 and AO353_24410 are separated by 277 nucleotidesAO353_24410 and AO353_24415 are separated by 46 nucleotidesAO353_24415 and AO353_24420 overlap by 17 nucleotides AO353_24400: AO353_24400 - ACP phosphodiesterase, at 5,365,246 to 5,365,851 _24400 AO353_24405: AO353_24405 - ArsR family transcriptional regulator, at 5,365,904 to 5,366,407 _24405 AO353_24410: AO353_24410 - amino acid ABC transporter substrate-binding protein, at 5,366,685 to 5,367,506 _24410 AO353_24415: AO353_24415 - glutamine ABC transporter ATP-binding protein, at 5,367,553 to 5,368,356 _24415 AO353_24420: AO353_24420 - amino acid ABC transporter permease, at 5,368,340 to 5,369,008 _24420 Position (kb) 5366 5367 5368Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5365.697 kb on + strand, within AO353_24400at 5365.726 kb on + strand, within AO353_24400at 5365.726 kb on + strand, within AO353_24400at 5365.747 kb on + strand, within AO353_24400at 5365.748 kb on - strand, within AO353_24400at 5365.905 kb on + strandat 5365.929 kb on - strandat 5366.032 kb on + strand, within AO353_24405at 5366.055 kb on - strand, within AO353_24405at 5366.168 kb on + strand, within AO353_24405at 5366.278 kb on + strand, within AO353_24405at 5366.279 kb on - strand, within AO353_24405at 5366.279 kb on - strand, within AO353_24405at 5366.367 kb on - strandat 5366.367 kb on - strandat 5366.409 kb on + strandat 5366.497 kb on + strandat 5366.506 kb on + strandat 5366.519 kb on + strandat 5366.520 kb on - strandat 5366.537 kb on + strandat 5366.538 kb on - strandat 5366.538 kb on - strandat 5366.616 kb on + strandat 5366.616 kb on + strandat 5366.678 kb on + strandat 5366.699 kb on + strandat 5366.699 kb on + strandat 5366.699 kb on + strandat 5366.700 kb on - strandat 5366.700 kb on - strandat 5366.700 kb on - strandat 5366.731 kb on + strandat 5366.731 kb on + strandat 5366.731 kb on + strandat 5366.731 kb on + strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.732 kb on - strandat 5366.734 kb on + strandat 5366.735 kb on - strandat 5366.735 kb on - strandat 5366.847 kb on + strand, within AO353_24410at 5366.847 kb on + strand, within AO353_24410at 5366.847 kb on + strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strandat 5366.848 kb on - strand, within AO353_24410at 5366.848 kb on - strand, within AO353_24410at 5366.877 kb on + strand, within AO353_24410at 5366.921 kb on - strand, within AO353_24410at 5366.921 kb on - strand, within AO353_24410at 5366.968 kb on + strand, within AO353_24410at 5366.969 kb on - strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.011 kb on + strand, within AO353_24410at 5367.012 kb on - strand, within AO353_24410at 5367.012 kb on - strand, within AO353_24410at 5367.012 kb on - strand, within AO353_24410at 5367.084 kb on + strand, within AO353_24410at 5367.085 kb on - strand, within AO353_24410at 5367.085 kb on - strand, within AO353_24410at 5367.116 kb on + strand, within AO353_24410at 5367.183 kb on - strand, within AO353_24410at 5367.183 kb on - strand, within AO353_24410at 5367.258 kb on - strand, within AO353_24410at 5367.288 kb on - strand, within AO353_24410at 5367.300 kb on - strand, within AO353_24410at 5367.300 kb on - strand, within AO353_24410at 5367.337 kb on + strand, within AO353_24410at 5367.337 kb on + strand, within AO353_24410at 5367.337 kb on + strand, within AO353_24410at 5367.353 kb on - strand, within AO353_24410at 5367.398 kb on + strand, within AO353_24410at 5367.405 kb on + strand, within AO353_24410at 5367.405 kb on + strand, within AO353_24410at 5367.432 kb on + strandat 5367.433 kb on - strandat 5367.434 kb on + strandat 5367.462 kb on - strandat 5367.485 kb on + strandat 5367.505 kb on - strandat 5367.523 kb on - strandat 5367.601 kb on + strandat 5367.614 kb on + strandat 5367.707 kb on + strand, within AO353_24415at 5367.783 kb on + strand, within AO353_24415at 5368.044 kb on - strand, within AO353_24415at 5368.081 kb on - strand, within AO353_24415at 5368.128 kb on + strand, within AO353_24415at 5368.164 kb on - strand, within AO353_24415at 5368.298 kb on + strandat 5368.298 kb on + strandat 5368.347 kb on - strandat 5368.440 kb on + strand, within AO353_24420at 5368.441 kb on - strand, within AO353_24420at 5368.441 kb on - strand, within AO353_24420at 5368.441 kb on - strand, within AO353_24420

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.025 mM
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5,365,697 + AO353_24400 0.74 +0.9
5,365,726 + AO353_24400 0.79 +2.0
5,365,726 + AO353_24400 0.79 +0.8
5,365,747 + AO353_24400 0.83 +0.6
5,365,748 - AO353_24400 0.83 -0.1
5,365,905 + -2.5
5,365,929 - +0.3
5,366,032 + AO353_24405 0.25 -0.5
5,366,055 - AO353_24405 0.30 -0.1
5,366,168 + AO353_24405 0.52 +1.4
5,366,278 + AO353_24405 0.74 +0.1
5,366,279 - AO353_24405 0.74 -2.6
5,366,279 - AO353_24405 0.74 +0.6
5,366,367 - -0.6
5,366,367 - -0.8
5,366,409 + +0.0
5,366,497 + +0.9
5,366,506 + -2.0
5,366,519 + +0.1
5,366,520 - +0.7
5,366,537 + +0.3
5,366,538 - +0.8
5,366,538 - +0.7
5,366,616 + -1.0
5,366,616 + +0.2
5,366,678 + -0.9
5,366,699 + +0.3
5,366,699 + -0.8
5,366,699 + +1.5
5,366,700 - +0.3
5,366,700 - -0.8
5,366,700 - -0.1
5,366,731 + -1.0
5,366,731 + +0.5
5,366,731 + -0.1
5,366,731 + +1.2
5,366,732 - +0.7
5,366,732 - +1.0
5,366,732 - -1.1
5,366,732 - +0.2
5,366,732 - -0.9
5,366,732 - -0.0
5,366,734 + +2.2
5,366,735 - +0.6
5,366,735 - -0.1
5,366,847 + AO353_24410 0.20 -1.3
5,366,847 + AO353_24410 0.20 +0.1
5,366,847 + AO353_24410 0.20 +1.0
5,366,848 - AO353_24410 0.20 -2.5
5,366,848 - AO353_24410 0.20 -1.1
5,366,848 - AO353_24410 0.20 +0.2
5,366,848 - +1.2
5,366,848 - AO353_24410 0.20 -0.5
5,366,848 - AO353_24410 0.20 +0.7
5,366,877 + AO353_24410 0.23 +0.4
5,366,921 - AO353_24410 0.29 +0.8
5,366,921 - AO353_24410 0.29 -0.1
5,366,968 + AO353_24410 0.34 -0.4
5,366,969 - AO353_24410 0.35 +0.1
5,367,011 + AO353_24410 0.40 +0.2
5,367,011 + AO353_24410 0.40 +0.2
5,367,011 + AO353_24410 0.40 -0.8
5,367,011 + AO353_24410 0.40 -0.3
5,367,011 + AO353_24410 0.40 +0.5
5,367,012 - AO353_24410 0.40 -0.8
5,367,012 - AO353_24410 0.40 -0.8
5,367,012 - AO353_24410 0.40 -0.5
5,367,084 + AO353_24410 0.49 +0.7
5,367,085 - AO353_24410 0.49 -0.8
5,367,085 - AO353_24410 0.49 +0.7
5,367,116 + AO353_24410 0.52 -0.6
5,367,183 - AO353_24410 0.61 -0.2
5,367,183 - AO353_24410 0.61 -1.2
5,367,258 - AO353_24410 0.70 -0.1
5,367,288 - AO353_24410 0.73 -0.1
5,367,300 - AO353_24410 0.75 -3.0
5,367,300 - AO353_24410 0.75 +0.0
5,367,337 + AO353_24410 0.79 +0.5
5,367,337 + AO353_24410 0.79 -0.8
5,367,337 + AO353_24410 0.79 +0.7
5,367,353 - AO353_24410 0.81 -0.8
5,367,398 + AO353_24410 0.87 +0.1
5,367,405 + AO353_24410 0.88 -1.3
5,367,405 + AO353_24410 0.88 -0.8
5,367,432 + +1.6
5,367,433 - +0.5
5,367,434 + +1.0
5,367,462 - -0.1
5,367,485 + +0.2
5,367,505 - +1.4
5,367,523 - -1.5
5,367,601 + +1.7
5,367,614 + +1.2
5,367,707 + AO353_24415 0.19 +0.1
5,367,783 + AO353_24415 0.29 -0.6
5,368,044 - AO353_24415 0.61 -2.2
5,368,081 - AO353_24415 0.66 -0.5
5,368,128 + AO353_24415 0.72 -1.3
5,368,164 - AO353_24415 0.76 -0.3
5,368,298 + -0.4
5,368,298 + +0.4
5,368,347 - +0.5
5,368,440 + AO353_24420 0.15 +0.8
5,368,441 - AO353_24420 0.15 -1.7
5,368,441 - AO353_24420 0.15 +0.4
5,368,441 - AO353_24420 0.15 -1.4

Or see this region's nucleotide sequence