Experiment: Benzethonium chloride 0.025 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23705 and AO353_23710 are separated by 300 nucleotides AO353_23710 and AO353_23715 overlap by 4 nucleotides
AO353_23705: AO353_23705 - type IV secretion protein Rhs, at 5,194,386 to 5,196,386
_23705
AO353_23710: AO353_23710 - protein BatD, at 5,196,687 to 5,198,327
_23710
AO353_23715: AO353_23715 - hypothetical protein, at 5,198,324 to 5,200,075
_23715
Position (kb)
5196
5197
5198
5199 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 5195.705 kb on - strand, within AO353_23705 at 5195.851 kb on - strand, within AO353_23705 at 5195.941 kb on + strand, within AO353_23705 at 5195.942 kb on - strand, within AO353_23705 at 5195.953 kb on + strand, within AO353_23705 at 5195.953 kb on + strand, within AO353_23705 at 5196.087 kb on + strand, within AO353_23705 at 5196.091 kb on + strand, within AO353_23705 at 5196.092 kb on - strand, within AO353_23705 at 5196.163 kb on + strand, within AO353_23705 at 5196.163 kb on + strand, within AO353_23705 at 5196.164 kb on - strand, within AO353_23705 at 5196.164 kb on - strand, within AO353_23705 at 5196.280 kb on + strand at 5196.281 kb on - strand at 5196.318 kb on + strand at 5196.404 kb on + strand at 5196.404 kb on + strand at 5196.463 kb on - strand at 5196.463 kb on - strand at 5196.466 kb on + strand at 5196.466 kb on + strand at 5196.466 kb on + strand at 5196.471 kb on + strand at 5196.471 kb on + strand at 5196.472 kb on - strand at 5196.472 kb on - strand at 5196.525 kb on + strand at 5196.525 kb on + strand at 5196.525 kb on + strand at 5196.526 kb on - strand at 5196.526 kb on - strand at 5196.532 kb on + strand at 5196.563 kb on - strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.641 kb on + strand at 5196.642 kb on - strand at 5196.642 kb on - strand at 5196.642 kb on - strand at 5196.642 kb on - strand at 5196.642 kb on - strand at 5196.688 kb on + strand at 5196.697 kb on + strand at 5197.484 kb on + strand, within AO353_23710 at 5197.484 kb on + strand, within AO353_23710 at 5197.771 kb on + strand, within AO353_23710 at 5197.772 kb on - strand, within AO353_23710 at 5197.826 kb on + strand, within AO353_23710 at 5197.827 kb on - strand, within AO353_23710 at 5197.844 kb on - strand, within AO353_23710 at 5197.844 kb on - strand, within AO353_23710 at 5197.844 kb on - strand, within AO353_23710 at 5197.861 kb on + strand, within AO353_23710 at 5197.862 kb on - strand, within AO353_23710 at 5197.897 kb on + strand, within AO353_23710 at 5197.897 kb on + strand, within AO353_23710 at 5197.898 kb on - strand, within AO353_23710 at 5197.898 kb on - strand, within AO353_23710 at 5197.898 kb on - strand, within AO353_23710 at 5197.898 kb on - strand, within AO353_23710 at 5198.005 kb on + strand, within AO353_23710 at 5198.005 kb on + strand, within AO353_23710 at 5198.364 kb on + strand at 5198.738 kb on + strand, within AO353_23715 at 5198.739 kb on - strand at 5198.769 kb on - strand, within AO353_23715 at 5198.799 kb on + strand, within AO353_23715 at 5198.800 kb on - strand, within AO353_23715 at 5198.800 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.857 kb on - strand, within AO353_23715 at 5198.907 kb on + strand, within AO353_23715 at 5198.907 kb on + strand, within AO353_23715 at 5198.908 kb on - strand, within AO353_23715 at 5198.922 kb on + strand, within AO353_23715 at 5198.922 kb on + strand, within AO353_23715 at 5198.922 kb on + strand, within AO353_23715 at 5198.923 kb on - strand, within AO353_23715 at 5199.048 kb on + strand, within AO353_23715 at 5199.147 kb on + strand, within AO353_23715 at 5199.148 kb on - strand, within AO353_23715 at 5199.203 kb on - strand, within AO353_23715 at 5199.296 kb on - strand, within AO353_23715
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.025 mM remove 5,195,705 - AO353_23705 0.66 +0.3 5,195,851 - AO353_23705 0.73 -0.9 5,195,941 + AO353_23705 0.78 +0.3 5,195,942 - AO353_23705 0.78 -0.5 5,195,953 + AO353_23705 0.78 +1.7 5,195,953 + AO353_23705 0.78 -0.1 5,196,087 + AO353_23705 0.85 -1.8 5,196,091 + AO353_23705 0.85 -0.0 5,196,092 - AO353_23705 0.85 -1.5 5,196,163 + AO353_23705 0.89 +0.1 5,196,163 + AO353_23705 0.89 +1.9 5,196,164 - AO353_23705 0.89 -0.3 5,196,164 - AO353_23705 0.89 -0.5 5,196,280 + +0.3 5,196,281 - +0.2 5,196,318 + +0.3 5,196,404 + -2.2 5,196,404 + -0.7 5,196,463 - -0.9 5,196,463 - +1.0 5,196,466 + -0.6 5,196,466 + +0.5 5,196,466 + -0.5 5,196,471 + -0.1 5,196,471 + +0.1 5,196,472 - +0.8 5,196,472 - +0.7 5,196,525 + -0.9 5,196,525 + +1.3 5,196,525 + +1.1 5,196,526 - +0.9 5,196,526 - -1.7 5,196,532 + -0.1 5,196,563 - +0.3 5,196,641 + -0.3 5,196,641 + -0.1 5,196,641 + +1.1 5,196,641 + -0.2 5,196,641 + -2.7 5,196,641 + -1.8 5,196,641 + -1.5 5,196,642 - +1.5 5,196,642 - -1.0 5,196,642 - +0.7 5,196,642 - -2.0 5,196,642 - -0.3 5,196,688 + -1.5 5,196,697 + -0.3 5,197,484 + AO353_23710 0.49 -2.8 5,197,484 + AO353_23710 0.49 +0.3 5,197,771 + AO353_23710 0.66 -0.7 5,197,772 - AO353_23710 0.66 -2.0 5,197,826 + AO353_23710 0.69 +0.4 5,197,827 - AO353_23710 0.69 -1.0 5,197,844 - AO353_23710 0.71 -0.9 5,197,844 - AO353_23710 0.71 +0.1 5,197,844 - AO353_23710 0.71 -1.3 5,197,861 + AO353_23710 0.72 -0.3 5,197,862 - AO353_23710 0.72 +0.3 5,197,897 + AO353_23710 0.74 -2.0 5,197,897 + AO353_23710 0.74 -1.5 5,197,898 - AO353_23710 0.74 -0.3 5,197,898 - AO353_23710 0.74 -1.2 5,197,898 - AO353_23710 0.74 -2.6 5,197,898 - AO353_23710 0.74 -0.3 5,198,005 + AO353_23710 0.80 -1.4 5,198,005 + AO353_23710 0.80 -1.5 5,198,364 + -0.1 5,198,738 + AO353_23715 0.24 +0.0 5,198,739 - -1.3 5,198,769 - AO353_23715 0.25 -0.3 5,198,799 + AO353_23715 0.27 -0.6 5,198,800 - AO353_23715 0.27 +0.3 5,198,800 - AO353_23715 0.27 -1.9 5,198,857 - AO353_23715 0.30 -1.0 5,198,857 - AO353_23715 0.30 -0.7 5,198,857 - AO353_23715 0.30 -1.3 5,198,857 - AO353_23715 0.30 -2.2 5,198,857 - AO353_23715 0.30 -1.2 5,198,907 + AO353_23715 0.33 -1.3 5,198,907 + AO353_23715 0.33 -1.8 5,198,908 - AO353_23715 0.33 -0.6 5,198,922 + AO353_23715 0.34 -1.8 5,198,922 + AO353_23715 0.34 -1.0 5,198,922 + AO353_23715 0.34 -0.3 5,198,923 - AO353_23715 0.34 +0.1 5,199,048 + AO353_23715 0.41 -1.2 5,199,147 + AO353_23715 0.47 -0.4 5,199,148 - AO353_23715 0.47 -2.0 5,199,203 - AO353_23715 0.50 -2.2 5,199,296 - AO353_23715 0.55 -3.9
Or see this region's nucleotide sequence