Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_21300

Experiment: Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_21295 and AO353_21300 are separated by 110 nucleotidesAO353_21300 and AO353_21305 are separated by 3 nucleotides AO353_21295: AO353_21295 - hypothetical protein, at 4,659,387 to 4,660,784 _21295 AO353_21300: AO353_21300 - glycolate oxidase iron-sulfur subunit, at 4,660,895 to 4,662,112 _21300 AO353_21305: AO353_21305 - glycolate oxidase, at 4,662,116 to 4,663,174 _21305 Position (kb) 4660 4661 4662 4663Strain fitness (log2 ratio) -3 -2 -1 0 1at 4660.177 kb on + strand, within AO353_21295at 4660.177 kb on + strand, within AO353_21295at 4660.178 kb on - strand, within AO353_21295at 4660.489 kb on + strand, within AO353_21295at 4660.489 kb on + strand, within AO353_21295at 4660.489 kb on + strand, within AO353_21295at 4660.490 kb on - strand, within AO353_21295at 4660.490 kb on - strand, within AO353_21295at 4660.617 kb on + strand, within AO353_21295at 4660.617 kb on + strand, within AO353_21295at 4660.714 kb on + strandat 4660.714 kb on + strandat 4660.714 kb on + strandat 4660.715 kb on - strandat 4660.715 kb on - strandat 4660.715 kb on - strandat 4660.784 kb on + strandat 4660.784 kb on + strandat 4660.817 kb on - strandat 4660.904 kb on + strandat 4660.904 kb on + strandat 4660.905 kb on - strandat 4660.905 kb on - strandat 4661.073 kb on + strand, within AO353_21300at 4661.073 kb on + strand, within AO353_21300at 4661.073 kb on + strand, within AO353_21300at 4661.073 kb on + strand, within AO353_21300at 4661.074 kb on - strand, within AO353_21300at 4661.074 kb on - strand, within AO353_21300at 4661.145 kb on - strand, within AO353_21300at 4661.145 kb on - strand, within AO353_21300at 4661.145 kb on - strand, within AO353_21300at 4661.473 kb on - strand, within AO353_21300at 4661.510 kb on - strand, within AO353_21300at 4661.955 kb on + strand, within AO353_21300at 4661.955 kb on + strand, within AO353_21300at 4661.955 kb on + strand, within AO353_21300at 4661.955 kb on + strand, within AO353_21300at 4661.956 kb on - strand, within AO353_21300at 4661.956 kb on - strand, within AO353_21300at 4662.000 kb on + strandat 4662.000 kb on + strandat 4662.001 kb on - strandat 4662.001 kb on - strandat 4662.001 kb on - strandat 4662.129 kb on + strandat 4662.130 kb on - strandat 4662.130 kb on - strandat 4662.130 kb on - strandat 4662.130 kb on - strandat 4662.130 kb on - strandat 4662.247 kb on - strand, within AO353_21305at 4662.247 kb on - strand, within AO353_21305at 4662.247 kb on - strand, within AO353_21305at 4662.775 kb on + strand, within AO353_21305at 4662.851 kb on + strand, within AO353_21305at 4662.965 kb on - strand, within AO353_21305at 4663.002 kb on + strandat 4663.002 kb on + strand, within AO353_21305at 4663.003 kb on - strand, within AO353_21305at 4663.003 kb on - strand, within AO353_21305at 4663.003 kb on - strand, within AO353_21305

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.025 mM
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4,660,177 + AO353_21295 0.57 -0.5
4,660,177 + AO353_21295 0.57 +1.5
4,660,178 - AO353_21295 0.57 +0.5
4,660,489 + AO353_21295 0.79 -1.6
4,660,489 + AO353_21295 0.79 -1.4
4,660,489 + AO353_21295 0.79 +0.0
4,660,490 - AO353_21295 0.79 +1.5
4,660,490 - AO353_21295 0.79 +0.5
4,660,617 + AO353_21295 0.88 +1.1
4,660,617 + AO353_21295 0.88 +0.5
4,660,714 + -0.5
4,660,714 + -1.3
4,660,714 + -0.1
4,660,715 - +0.8
4,660,715 - +1.3
4,660,715 - +0.6
4,660,784 + +0.3
4,660,784 + -0.2
4,660,817 - -2.2
4,660,904 + -0.3
4,660,904 + -0.4
4,660,905 - -0.5
4,660,905 - -0.4
4,661,073 + AO353_21300 0.15 -2.1
4,661,073 + AO353_21300 0.15 -0.5
4,661,073 + AO353_21300 0.15 -1.1
4,661,073 + AO353_21300 0.15 -3.0
4,661,074 - AO353_21300 0.15 -0.5
4,661,074 - AO353_21300 0.15 -0.2
4,661,145 - AO353_21300 0.21 -0.1
4,661,145 - AO353_21300 0.21 +0.9
4,661,145 - AO353_21300 0.21 -1.3
4,661,473 - AO353_21300 0.47 +0.7
4,661,510 - AO353_21300 0.50 -0.4
4,661,955 + AO353_21300 0.87 -1.5
4,661,955 + AO353_21300 0.87 -0.9
4,661,955 + AO353_21300 0.87 -1.3
4,661,955 + AO353_21300 0.87 -0.7
4,661,956 - AO353_21300 0.87 -1.2
4,661,956 - AO353_21300 0.87 +0.1
4,662,000 + +0.2
4,662,000 + -1.5
4,662,001 - -1.2
4,662,001 - -2.1
4,662,001 - -2.0
4,662,129 + -2.5
4,662,130 - -0.2
4,662,130 - -0.1
4,662,130 - -0.1
4,662,130 - +0.2
4,662,130 - +0.1
4,662,247 - AO353_21305 0.12 -0.7
4,662,247 - AO353_21305 0.12 +0.0
4,662,247 - AO353_21305 0.12 +0.7
4,662,775 + AO353_21305 0.62 +0.1
4,662,851 + AO353_21305 0.69 -0.6
4,662,965 - AO353_21305 0.80 +0.1
4,663,002 + +0.5
4,663,002 + AO353_21305 0.84 -0.9
4,663,003 - AO353_21305 0.84 +0.9
4,663,003 - AO353_21305 0.84 -0.5
4,663,003 - AO353_21305 0.84 -2.2

Or see this region's nucleotide sequence