Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_14585

Experiment: Benzethonium chloride 0.025 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_14575 and AO353_14580 are separated by 218 nucleotidesAO353_14580 and AO353_14585 overlap by 8 nucleotidesAO353_14585 and AO353_14590 are separated by 159 nucleotidesAO353_14590 and AO353_14595 are separated by 150 nucleotides AO353_14575: AO353_14575 - hypothetical protein, at 3,231,857 to 3,233,134 _14575 AO353_14580: AO353_14580 - energy transducer TonB, at 3,233,353 to 3,234,099 _14580 AO353_14585: AO353_14585 - ribosomal-protein-alanine acetyltransferase, at 3,234,092 to 3,234,544 _14585 AO353_14590: AO353_14590 - serine kinase/phosphatase, at 3,234,704 to 3,235,105 _14590 AO353_14595: AO353_14595 - carbonate dehydratase, at 3,235,256 to 3,235,900 _14595 Position (kb) 3234 3235Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3233.174 kb on + strandat 3233.174 kb on + strandat 3233.174 kb on + strandat 3233.174 kb on + strandat 3233.175 kb on - strandat 3233.175 kb on - strandat 3233.236 kb on + strandat 3233.237 kb on - strandat 3233.273 kb on + strandat 3234.105 kb on + strandat 3234.144 kb on + strand, within AO353_14585at 3234.158 kb on + strand, within AO353_14585at 3234.215 kb on + strand, within AO353_14585at 3234.215 kb on + strand, within AO353_14585at 3234.216 kb on - strand, within AO353_14585at 3234.216 kb on - strand, within AO353_14585at 3234.374 kb on + strand, within AO353_14585at 3234.374 kb on + strand, within AO353_14585at 3234.375 kb on - strand, within AO353_14585at 3234.375 kb on - strand, within AO353_14585at 3234.440 kb on + strand, within AO353_14585at 3234.440 kb on + strand, within AO353_14585at 3234.440 kb on + strand, within AO353_14585at 3234.441 kb on - strand, within AO353_14585at 3234.441 kb on - strand, within AO353_14585at 3234.441 kb on - strand, within AO353_14585at 3234.441 kb on - strandat 3234.441 kb on - strand, within AO353_14585at 3234.441 kb on - strand, within AO353_14585at 3234.482 kb on + strand, within AO353_14585at 3234.482 kb on + strand, within AO353_14585at 3234.483 kb on - strand, within AO353_14585at 3234.483 kb on - strand, within AO353_14585at 3234.483 kb on - strand, within AO353_14585at 3234.483 kb on - strand, within AO353_14585at 3234.485 kb on + strand, within AO353_14585at 3234.601 kb on - strandat 3234.610 kb on + strandat 3234.610 kb on + strandat 3234.610 kb on + strandat 3234.611 kb on - strandat 3234.638 kb on - strandat 3234.932 kb on + strand, within AO353_14590at 3234.932 kb on + strand, within AO353_14590at 3234.933 kb on - strand, within AO353_14590at 3235.084 kb on - strandat 3235.084 kb on - strandat 3235.118 kb on + strandat 3235.118 kb on + strandat 3235.118 kb on + strandat 3235.118 kb on + strandat 3235.119 kb on - strandat 3235.119 kb on - strandat 3235.119 kb on - strandat 3235.119 kb on - strandat 3235.131 kb on + strandat 3235.132 kb on - strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.133 kb on + strandat 3235.134 kb on - strandat 3235.134 kb on - strandat 3235.134 kb on - strandat 3235.134 kb on - strandat 3235.134 kb on - strandat 3235.134 kb on - strandat 3235.134 kb on - strandat 3235.134 kb on - strandat 3235.134 kb on - strandat 3235.134 kb on - strandat 3235.156 kb on - strandat 3235.266 kb on + strandat 3235.282 kb on + strandat 3235.283 kb on - strandat 3235.283 kb on - strandat 3235.283 kb on - strandat 3235.364 kb on + strand, within AO353_14595at 3235.364 kb on + strand, within AO353_14595at 3235.364 kb on + strand, within AO353_14595at 3235.364 kb on + strand, within AO353_14595at 3235.364 kb on + strand, within AO353_14595at 3235.365 kb on - strand, within AO353_14595at 3235.365 kb on - strand, within AO353_14595at 3235.365 kb on - strand, within AO353_14595at 3235.440 kb on + strand, within AO353_14595at 3235.440 kb on + strand, within AO353_14595at 3235.440 kb on + strand, within AO353_14595at 3235.441 kb on - strand, within AO353_14595at 3235.441 kb on - strand, within AO353_14595at 3235.441 kb on - strand, within AO353_14595at 3235.441 kb on - strand, within AO353_14595at 3235.441 kb on - strand, within AO353_14595at 3235.441 kb on - strand, within AO353_14595at 3235.441 kb on - strand, within AO353_14595at 3235.480 kb on + strand, within AO353_14595at 3235.480 kb on + strand, within AO353_14595at 3235.480 kb on + strand, within AO353_14595at 3235.480 kb on + strand, within AO353_14595at 3235.480 kb on + strand, within AO353_14595at 3235.481 kb on - strand, within AO353_14595at 3235.481 kb on - strand, within AO353_14595

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Per-strain Table

Position Strand Gene LocusTag Fraction Benzethonium chloride 0.025 mM
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3,233,174 + +0.7
3,233,174 + +1.2
3,233,174 + -0.0
3,233,174 + +1.1
3,233,175 - +0.2
3,233,175 - +3.3
3,233,236 + -0.2
3,233,237 - -0.7
3,233,273 + -2.2
3,234,105 + +0.9
3,234,144 + AO353_14585 0.11 -1.3
3,234,158 + AO353_14585 0.15 +0.8
3,234,215 + AO353_14585 0.27 -0.6
3,234,215 + AO353_14585 0.27 +0.7
3,234,216 - AO353_14585 0.27 -0.9
3,234,216 - AO353_14585 0.27 +0.8
3,234,374 + AO353_14585 0.62 -0.5
3,234,374 + AO353_14585 0.62 +0.4
3,234,375 - AO353_14585 0.62 -0.5
3,234,375 - AO353_14585 0.62 -0.6
3,234,440 + AO353_14585 0.77 -1.5
3,234,440 + AO353_14585 0.77 -0.0
3,234,440 + AO353_14585 0.77 +0.1
3,234,441 - AO353_14585 0.77 -1.5
3,234,441 - AO353_14585 0.77 -1.6
3,234,441 - AO353_14585 0.77 +0.2
3,234,441 - +1.0
3,234,441 - AO353_14585 0.77 -1.2
3,234,441 - AO353_14585 0.77 -0.5
3,234,482 + AO353_14585 0.86 -0.5
3,234,482 + AO353_14585 0.86 -0.0
3,234,483 - AO353_14585 0.86 -0.8
3,234,483 - AO353_14585 0.86 +1.0
3,234,483 - AO353_14585 0.86 +0.8
3,234,483 - AO353_14585 0.86 -0.6
3,234,485 + AO353_14585 0.87 -1.9
3,234,601 - +0.2
3,234,610 + +0.3
3,234,610 + +1.6
3,234,610 + -0.8
3,234,611 - -0.0
3,234,638 - -2.3
3,234,932 + AO353_14590 0.57 +0.7
3,234,932 + AO353_14590 0.57 +0.0
3,234,933 - AO353_14590 0.57 -0.6
3,235,084 - +0.8
3,235,084 - -0.3
3,235,118 + +0.5
3,235,118 + +1.2
3,235,118 + +0.3
3,235,118 + +0.4
3,235,119 - -0.9
3,235,119 - -0.0
3,235,119 - +0.2
3,235,119 - -1.5
3,235,131 + +0.2
3,235,132 - -0.1
3,235,133 + +0.2
3,235,133 + -1.5
3,235,133 + -1.8
3,235,133 + +0.2
3,235,133 + -0.0
3,235,133 + -0.6
3,235,133 + -0.4
3,235,133 + -2.1
3,235,133 + -0.3
3,235,133 + +0.5
3,235,133 + +1.0
3,235,134 - -2.2
3,235,134 - -0.3
3,235,134 - -0.3
3,235,134 - +1.0
3,235,134 - -1.6
3,235,134 - -0.1
3,235,134 - -0.5
3,235,134 - +0.2
3,235,134 - +1.0
3,235,134 - -0.3
3,235,156 - +0.1
3,235,266 + +0.2
3,235,282 + -0.0
3,235,283 - +0.1
3,235,283 - -1.2
3,235,283 - +0.5
3,235,364 + AO353_14595 0.17 +0.1
3,235,364 + AO353_14595 0.17 -0.7
3,235,364 + AO353_14595 0.17 +0.5
3,235,364 + AO353_14595 0.17 -1.2
3,235,364 + AO353_14595 0.17 +1.0
3,235,365 - AO353_14595 0.17 +1.5
3,235,365 - AO353_14595 0.17 -0.8
3,235,365 - AO353_14595 0.17 -0.3
3,235,440 + AO353_14595 0.29 -0.5
3,235,440 + AO353_14595 0.29 +0.2
3,235,440 + AO353_14595 0.29 -0.1
3,235,441 - AO353_14595 0.29 +0.7
3,235,441 - AO353_14595 0.29 -0.8
3,235,441 - AO353_14595 0.29 +0.4
3,235,441 - AO353_14595 0.29 +0.2
3,235,441 - AO353_14595 0.29 -0.6
3,235,441 - AO353_14595 0.29 +0.3
3,235,441 - AO353_14595 0.29 +1.0
3,235,480 + AO353_14595 0.35 +0.7
3,235,480 + AO353_14595 0.35 -0.2
3,235,480 + AO353_14595 0.35 +1.1
3,235,480 + AO353_14595 0.35 +0.2
3,235,480 + AO353_14595 0.35 -1.7
3,235,481 - AO353_14595 0.35 -1.9
3,235,481 - AO353_14595 0.35 +1.2

Or see this region's nucleotide sequence