Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS18010

Experiment: Fusidic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS18000 and ABZR86_RS18005 are separated by 47 nucleotidesABZR86_RS18005 and ABZR86_RS18010 are separated by 118 nucleotidesABZR86_RS18010 and ABZR86_RS18015 are separated by 129 nucleotidesABZR86_RS18015 and ABZR86_RS18020 are separated by 104 nucleotides ABZR86_RS18000: ABZR86_RS18000 - putative quinol monooxygenase, at 15,349 to 15,651 _RS18000 ABZR86_RS18005: ABZR86_RS18005 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 15,699 to 16,328 _RS18005 ABZR86_RS18010: ABZR86_RS18010 - aldo/keto reductase, at 16,447 to 17,259 _RS18010 ABZR86_RS18015: ABZR86_RS18015 - TetR/AcrR family transcriptional regulator, at 17,389 to 18,003 _RS18015 ABZR86_RS18020: ABZR86_RS18020 - MBL fold metallo-hydrolase, at 18,108 to 19,235 _RS18020 Position (kb) 16 17 18Strain fitness (log2 ratio) -3 -2 -1 0 1at 15.663 kb on + strandat 15.682 kb on - strandat 16.171 kb on - strand, within ABZR86_RS18005at 16.178 kb on + strand, within ABZR86_RS18005at 16.178 kb on + strand, within ABZR86_RS18005at 16.179 kb on - strand, within ABZR86_RS18005at 16.185 kb on + strand, within ABZR86_RS18005at 16.186 kb on - strand, within ABZR86_RS18005at 16.186 kb on - strand, within ABZR86_RS18005at 16.307 kb on + strandat 16.435 kb on + strandat 16.436 kb on - strandat 16.508 kb on - strandat 16.602 kb on + strand, within ABZR86_RS18010at 16.615 kb on + strand, within ABZR86_RS18010at 16.615 kb on + strand, within ABZR86_RS18010at 16.616 kb on - strand, within ABZR86_RS18010at 16.786 kb on - strand, within ABZR86_RS18010at 16.786 kb on - strand, within ABZR86_RS18010at 16.786 kb on - strand, within ABZR86_RS18010at 16.811 kb on + strand, within ABZR86_RS18010at 16.811 kb on + strand, within ABZR86_RS18010at 16.852 kb on + strand, within ABZR86_RS18010at 16.871 kb on - strand, within ABZR86_RS18010at 16.885 kb on + strand, within ABZR86_RS18010at 17.322 kb on - strandat 17.330 kb on + strandat 17.330 kb on + strandat 17.330 kb on + strandat 17.330 kb on + strandat 17.330 kb on + strandat 17.331 kb on - strandat 17.331 kb on - strandat 17.331 kb on - strandat 17.331 kb on - strandat 17.331 kb on - strandat 17.331 kb on - strandat 17.331 kb on - strandat 17.331 kb on - strandat 17.331 kb on - strandat 17.336 kb on + strandat 17.336 kb on + strandat 17.337 kb on - strandat 17.337 kb on - strandat 17.337 kb on - strandat 17.337 kb on - strandat 17.396 kb on + strandat 17.413 kb on - strandat 17.765 kb on + strand, within ABZR86_RS18015at 17.766 kb on - strand, within ABZR86_RS18015at 17.852 kb on + strand, within ABZR86_RS18015at 17.853 kb on - strand, within ABZR86_RS18015at 18.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml
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15,663 + +0.5
15,682 - +0.6
16,171 - ABZR86_RS18005 0.75 -0.9
16,178 + ABZR86_RS18005 0.76 -0.2
16,178 + ABZR86_RS18005 0.76 -0.1
16,179 - ABZR86_RS18005 0.76 +1.1
16,185 + ABZR86_RS18005 0.77 -0.2
16,186 - ABZR86_RS18005 0.77 +0.2
16,186 - ABZR86_RS18005 0.77 +0.5
16,307 + +0.0
16,435 + +0.6
16,436 - -2.2
16,508 - -0.1
16,602 + ABZR86_RS18010 0.19 -0.2
16,615 + ABZR86_RS18010 0.21 -0.5
16,615 + ABZR86_RS18010 0.21 +0.4
16,616 - ABZR86_RS18010 0.21 -1.2
16,786 - ABZR86_RS18010 0.42 -0.5
16,786 - ABZR86_RS18010 0.42 -0.3
16,786 - ABZR86_RS18010 0.42 -0.2
16,811 + ABZR86_RS18010 0.45 +0.3
16,811 + ABZR86_RS18010 0.45 -0.2
16,852 + ABZR86_RS18010 0.50 +0.0
16,871 - ABZR86_RS18010 0.52 +0.0
16,885 + ABZR86_RS18010 0.54 +0.5
17,322 - +0.1
17,330 + +0.6
17,330 + +0.5
17,330 + +0.2
17,330 + -0.4
17,330 + +0.3
17,331 - +0.4
17,331 - -0.8
17,331 - +0.2
17,331 - -0.0
17,331 - +0.5
17,331 - +0.2
17,331 - -1.3
17,331 - -3.4
17,331 - +0.0
17,336 + +1.1
17,336 + -0.9
17,337 - -0.0
17,337 - +0.2
17,337 - +0.1
17,337 - +0.4
17,396 + -1.8
17,413 - -1.2
17,765 + ABZR86_RS18015 0.61 -0.1
17,766 - ABZR86_RS18015 0.61 -1.2
17,852 + ABZR86_RS18015 0.75 -0.7
17,853 - ABZR86_RS18015 0.75 -0.3
18,107 + +0.2

Or see this region's nucleotide sequence