Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17695

Experiment: Fusidic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17690 and ABZR86_RS17695 are separated by 300 nucleotidesABZR86_RS17695 and ABZR86_RS17700 are separated by 71 nucleotidesABZR86_RS17700 and ABZR86_RS17705 are separated by 23 nucleotides ABZR86_RS17690: ABZR86_RS17690 - protease pro-enzyme activation domain-containing protein, at 3,990,691 to 3,992,493 _RS17690 ABZR86_RS17695: ABZR86_RS17695 - MerR family DNA-binding protein, at 3,992,794 to 3,993,222 _RS17695 ABZR86_RS17700: ABZR86_RS17700 - oxidoreductase, at 3,993,294 to 3,994,127 _RS17700 ABZR86_RS17705: ABZR86_RS17705 - ATP-binding protein, at 3,994,151 to 3,995,203 _RS17705 Position (kb) 3992 3993 3994Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3991.808 kb on + strand, within ABZR86_RS17690at 3991.808 kb on + strand, within ABZR86_RS17690at 3991.808 kb on + strand, within ABZR86_RS17690at 3991.808 kb on + strand, within ABZR86_RS17690at 3991.809 kb on - strand, within ABZR86_RS17690at 3991.809 kb on - strand, within ABZR86_RS17690at 3991.809 kb on - strand, within ABZR86_RS17690at 3991.921 kb on + strand, within ABZR86_RS17690at 3991.921 kb on + strand, within ABZR86_RS17690at 3991.998 kb on - strand, within ABZR86_RS17690at 3992.146 kb on + strand, within ABZR86_RS17690at 3992.146 kb on + strand, within ABZR86_RS17690at 3992.147 kb on - strand, within ABZR86_RS17690at 3992.147 kb on - strand, within ABZR86_RS17690at 3992.147 kb on - strand, within ABZR86_RS17690at 3992.147 kb on - strand, within ABZR86_RS17690at 3992.168 kb on + strand, within ABZR86_RS17690at 3992.207 kb on + strand, within ABZR86_RS17690at 3992.231 kb on - strand, within ABZR86_RS17690at 3992.244 kb on - strand, within ABZR86_RS17690at 3992.244 kb on - strand, within ABZR86_RS17690at 3992.349 kb on - strandat 3992.349 kb on - strandat 3992.512 kb on + strandat 3992.645 kb on - strandat 3992.645 kb on - strandat 3992.711 kb on + strandat 3993.042 kb on + strand, within ABZR86_RS17695at 3993.165 kb on - strand, within ABZR86_RS17695at 3993.308 kb on - strandat 3993.372 kb on + strandat 3993.372 kb on + strandat 3993.372 kb on + strandat 3993.373 kb on - strandat 3993.373 kb on - strandat 3993.373 kb on - strandat 3993.381 kb on + strand, within ABZR86_RS17700at 3993.540 kb on + strand, within ABZR86_RS17700at 3993.540 kb on + strand, within ABZR86_RS17700at 3993.550 kb on - strand, within ABZR86_RS17700at 3993.550 kb on - strand, within ABZR86_RS17700at 3993.627 kb on - strand, within ABZR86_RS17700at 3993.727 kb on - strand, within ABZR86_RS17700at 3994.153 kb on - strandat 3994.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml
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3,991,808 + ABZR86_RS17690 0.62 +0.2
3,991,808 + ABZR86_RS17690 0.62 +0.5
3,991,808 + ABZR86_RS17690 0.62 -1.3
3,991,808 + ABZR86_RS17690 0.62 +0.8
3,991,809 - ABZR86_RS17690 0.62 +0.3
3,991,809 - ABZR86_RS17690 0.62 +1.0
3,991,809 - ABZR86_RS17690 0.62 +0.7
3,991,921 + ABZR86_RS17690 0.68 -0.1
3,991,921 + ABZR86_RS17690 0.68 -0.1
3,991,998 - ABZR86_RS17690 0.72 +0.4
3,992,146 + ABZR86_RS17690 0.81 +3.5
3,992,146 + ABZR86_RS17690 0.81 +0.5
3,992,147 - ABZR86_RS17690 0.81 -0.1
3,992,147 - ABZR86_RS17690 0.81 -2.6
3,992,147 - ABZR86_RS17690 0.81 +0.5
3,992,147 - ABZR86_RS17690 0.81 -0.2
3,992,168 + ABZR86_RS17690 0.82 +0.5
3,992,207 + ABZR86_RS17690 0.84 -0.7
3,992,231 - ABZR86_RS17690 0.85 +0.7
3,992,244 - ABZR86_RS17690 0.86 +0.6
3,992,244 - ABZR86_RS17690 0.86 +0.3
3,992,349 - -0.1
3,992,349 - -0.0
3,992,512 + +0.0
3,992,645 - +0.8
3,992,645 - +0.0
3,992,711 + +0.1
3,993,042 + ABZR86_RS17695 0.58 +0.0
3,993,165 - ABZR86_RS17695 0.86 -1.8
3,993,308 - +0.1
3,993,372 + +0.1
3,993,372 + +0.1
3,993,372 + -0.3
3,993,373 - -0.3
3,993,373 - +0.5
3,993,373 - +0.3
3,993,381 + ABZR86_RS17700 0.10 +0.5
3,993,540 + ABZR86_RS17700 0.29 -0.3
3,993,540 + ABZR86_RS17700 0.29 -1.0
3,993,550 - ABZR86_RS17700 0.31 -0.4
3,993,550 - ABZR86_RS17700 0.31 +0.8
3,993,627 - ABZR86_RS17700 0.40 +1.3
3,993,727 - ABZR86_RS17700 0.52 -0.2
3,994,153 - -0.1
3,994,153 - +0.9

Or see this region's nucleotide sequence