Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS15115

Experiment: Fusidic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS15110 and ABZR86_RS15115 are separated by 349 nucleotidesABZR86_RS15115 and ABZR86_RS15120 are separated by 54 nucleotides ABZR86_RS15110: ABZR86_RS15110 - type I restriction-modification system subunit M, at 3,399,760 to 3,401,316 _RS15110 ABZR86_RS15115: ABZR86_RS15115 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 3,401,666 to 3,403,009 _RS15115 ABZR86_RS15120: ABZR86_RS15120 - membrane protein insertase YidC, at 3,403,064 to 3,404,794 _RS15120 Position (kb) 3401 3402 3403 3404Strain fitness (log2 ratio) -3 -2 -1 0 1at 3400.677 kb on + strand, within ABZR86_RS15110at 3400.677 kb on + strand, within ABZR86_RS15110at 3400.678 kb on - strand, within ABZR86_RS15110at 3400.678 kb on - strand, within ABZR86_RS15110at 3400.708 kb on + strand, within ABZR86_RS15110at 3400.708 kb on + strand, within ABZR86_RS15110at 3400.708 kb on + strand, within ABZR86_RS15110at 3400.760 kb on + strand, within ABZR86_RS15110at 3400.761 kb on - strand, within ABZR86_RS15110at 3400.902 kb on + strand, within ABZR86_RS15110at 3400.903 kb on - strand, within ABZR86_RS15110at 3400.912 kb on - strand, within ABZR86_RS15110at 3401.063 kb on + strand, within ABZR86_RS15110at 3401.073 kb on - strand, within ABZR86_RS15110at 3401.164 kb on + strandat 3401.164 kb on + strandat 3401.165 kb on - strandat 3401.169 kb on - strandat 3401.169 kb on - strandat 3401.219 kb on + strandat 3401.219 kb on + strandat 3401.219 kb on + strandat 3401.219 kb on + strandat 3401.219 kb on + strandat 3401.219 kb on + strandat 3401.219 kb on + strandat 3401.219 kb on + strandat 3401.328 kb on + strandat 3401.390 kb on + strandat 3401.391 kb on - strandat 3401.391 kb on - strandat 3401.391 kb on - strandat 3401.432 kb on - strandat 3401.462 kb on - strandat 3401.481 kb on + strandat 3401.481 kb on + strandat 3401.515 kb on + strandat 3401.515 kb on + strandat 3401.516 kb on - strandat 3401.516 kb on - strandat 3401.522 kb on + strandat 3401.523 kb on - strandat 3401.526 kb on + strandat 3401.526 kb on + strandat 3401.588 kb on + strandat 3401.620 kb on + strandat 3401.620 kb on + strandat 3401.621 kb on - strandat 3401.646 kb on + strandat 3401.646 kb on + strandat 3401.646 kb on + strandat 3401.647 kb on - strandat 3401.721 kb on + strandat 3401.792 kb on + strandat 3401.792 kb on + strandat 3401.912 kb on - strand, within ABZR86_RS15115at 3401.963 kb on + strand, within ABZR86_RS15115at 3402.182 kb on - strand, within ABZR86_RS15115at 3402.789 kb on + strand, within ABZR86_RS15115at 3402.789 kb on + strand, within ABZR86_RS15115at 3402.789 kb on + strand, within ABZR86_RS15115at 3402.810 kb on + strand, within ABZR86_RS15115at 3402.810 kb on + strand, within ABZR86_RS15115at 3402.810 kb on + strand, within ABZR86_RS15115at 3402.811 kb on - strand, within ABZR86_RS15115

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml
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3,400,677 + ABZR86_RS15110 0.59 -1.4
3,400,677 + ABZR86_RS15110 0.59 +0.3
3,400,678 - ABZR86_RS15110 0.59 +0.1
3,400,678 - ABZR86_RS15110 0.59 +0.0
3,400,708 + ABZR86_RS15110 0.61 -0.4
3,400,708 + ABZR86_RS15110 0.61 +0.8
3,400,708 + ABZR86_RS15110 0.61 -0.5
3,400,760 + ABZR86_RS15110 0.64 +0.8
3,400,761 - ABZR86_RS15110 0.64 -1.6
3,400,902 + ABZR86_RS15110 0.73 +0.6
3,400,903 - ABZR86_RS15110 0.73 -2.2
3,400,912 - ABZR86_RS15110 0.74 +1.7
3,401,063 + ABZR86_RS15110 0.84 +0.3
3,401,073 - ABZR86_RS15110 0.84 -0.6
3,401,164 + -1.2
3,401,164 + +0.6
3,401,165 - -1.1
3,401,169 - +0.3
3,401,169 - -1.3
3,401,219 + -0.2
3,401,219 + +0.3
3,401,219 + -1.8
3,401,219 + +0.0
3,401,219 + -1.0
3,401,219 + +0.1
3,401,219 + -0.5
3,401,219 + -0.5
3,401,328 + -3.2
3,401,390 + -0.0
3,401,391 - +0.1
3,401,391 - -0.2
3,401,391 - -0.1
3,401,432 - -0.2
3,401,462 - +0.8
3,401,481 + -0.2
3,401,481 + +0.6
3,401,515 + -0.3
3,401,515 + +0.8
3,401,516 - -2.3
3,401,516 - +0.1
3,401,522 + -0.6
3,401,523 - -0.1
3,401,526 + -0.1
3,401,526 + +0.0
3,401,588 + -0.6
3,401,620 + -0.5
3,401,620 + +0.3
3,401,621 - -0.5
3,401,646 + -1.9
3,401,646 + +0.4
3,401,646 + +0.5
3,401,647 - -0.4
3,401,721 + +0.2
3,401,792 + -0.3
3,401,792 + +0.4
3,401,912 - ABZR86_RS15115 0.18 +0.8
3,401,963 + ABZR86_RS15115 0.22 +0.4
3,402,182 - ABZR86_RS15115 0.38 -1.4
3,402,789 + ABZR86_RS15115 0.84 -0.9
3,402,789 + ABZR86_RS15115 0.84 +0.0
3,402,789 + ABZR86_RS15115 0.84 -0.7
3,402,810 + ABZR86_RS15115 0.85 -1.3
3,402,810 + ABZR86_RS15115 0.85 -0.8
3,402,810 + ABZR86_RS15115 0.85 -0.4
3,402,811 - ABZR86_RS15115 0.85 -0.4

Or see this region's nucleotide sequence