Experiment: Fusidic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS15110 and ABZR86_RS15115 are separated by 349 nucleotides ABZR86_RS15115 and ABZR86_RS15120 are separated by 54 nucleotides
ABZR86_RS15110: ABZR86_RS15110 - type I restriction-modification system subunit M, at 3,399,760 to 3,401,316
_RS15110
ABZR86_RS15115: ABZR86_RS15115 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE, at 3,401,666 to 3,403,009
_RS15115
ABZR86_RS15120: ABZR86_RS15120 - membrane protein insertase YidC, at 3,403,064 to 3,404,794
_RS15120
Position (kb)
3401
3402
3403
3404 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3400.677 kb on + strand, within ABZR86_RS15110 at 3400.677 kb on + strand, within ABZR86_RS15110 at 3400.678 kb on - strand, within ABZR86_RS15110 at 3400.678 kb on - strand, within ABZR86_RS15110 at 3400.708 kb on + strand, within ABZR86_RS15110 at 3400.708 kb on + strand, within ABZR86_RS15110 at 3400.708 kb on + strand, within ABZR86_RS15110 at 3400.760 kb on + strand, within ABZR86_RS15110 at 3400.761 kb on - strand, within ABZR86_RS15110 at 3400.902 kb on + strand, within ABZR86_RS15110 at 3400.903 kb on - strand, within ABZR86_RS15110 at 3400.912 kb on - strand, within ABZR86_RS15110 at 3401.063 kb on + strand, within ABZR86_RS15110 at 3401.073 kb on - strand, within ABZR86_RS15110 at 3401.164 kb on + strand at 3401.164 kb on + strand at 3401.165 kb on - strand at 3401.169 kb on - strand at 3401.169 kb on - strand at 3401.219 kb on + strand at 3401.219 kb on + strand at 3401.219 kb on + strand at 3401.219 kb on + strand at 3401.219 kb on + strand at 3401.219 kb on + strand at 3401.219 kb on + strand at 3401.219 kb on + strand at 3401.328 kb on + strand at 3401.390 kb on + strand at 3401.391 kb on - strand at 3401.391 kb on - strand at 3401.391 kb on - strand at 3401.432 kb on - strand at 3401.462 kb on - strand at 3401.481 kb on + strand at 3401.481 kb on + strand at 3401.515 kb on + strand at 3401.515 kb on + strand at 3401.516 kb on - strand at 3401.516 kb on - strand at 3401.522 kb on + strand at 3401.523 kb on - strand at 3401.526 kb on + strand at 3401.526 kb on + strand at 3401.588 kb on + strand at 3401.620 kb on + strand at 3401.620 kb on + strand at 3401.621 kb on - strand at 3401.646 kb on + strand at 3401.646 kb on + strand at 3401.646 kb on + strand at 3401.647 kb on - strand at 3401.721 kb on + strand at 3401.792 kb on + strand at 3401.792 kb on + strand at 3401.912 kb on - strand, within ABZR86_RS15115 at 3401.963 kb on + strand, within ABZR86_RS15115 at 3402.182 kb on - strand, within ABZR86_RS15115 at 3402.789 kb on + strand, within ABZR86_RS15115 at 3402.789 kb on + strand, within ABZR86_RS15115 at 3402.789 kb on + strand, within ABZR86_RS15115 at 3402.810 kb on + strand, within ABZR86_RS15115 at 3402.810 kb on + strand, within ABZR86_RS15115 at 3402.810 kb on + strand, within ABZR86_RS15115 at 3402.811 kb on - strand, within ABZR86_RS15115
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml remove 3,400,677 + ABZR86_RS15110 0.59 -1.4 3,400,677 + ABZR86_RS15110 0.59 +0.3 3,400,678 - ABZR86_RS15110 0.59 +0.1 3,400,678 - ABZR86_RS15110 0.59 +0.0 3,400,708 + ABZR86_RS15110 0.61 -0.4 3,400,708 + ABZR86_RS15110 0.61 +0.8 3,400,708 + ABZR86_RS15110 0.61 -0.5 3,400,760 + ABZR86_RS15110 0.64 +0.8 3,400,761 - ABZR86_RS15110 0.64 -1.6 3,400,902 + ABZR86_RS15110 0.73 +0.6 3,400,903 - ABZR86_RS15110 0.73 -2.2 3,400,912 - ABZR86_RS15110 0.74 +1.7 3,401,063 + ABZR86_RS15110 0.84 +0.3 3,401,073 - ABZR86_RS15110 0.84 -0.6 3,401,164 + -1.2 3,401,164 + +0.6 3,401,165 - -1.1 3,401,169 - +0.3 3,401,169 - -1.3 3,401,219 + -0.2 3,401,219 + +0.3 3,401,219 + -1.8 3,401,219 + +0.0 3,401,219 + -1.0 3,401,219 + +0.1 3,401,219 + -0.5 3,401,219 + -0.5 3,401,328 + -3.2 3,401,390 + -0.0 3,401,391 - +0.1 3,401,391 - -0.2 3,401,391 - -0.1 3,401,432 - -0.2 3,401,462 - +0.8 3,401,481 + -0.2 3,401,481 + +0.6 3,401,515 + -0.3 3,401,515 + +0.8 3,401,516 - -2.3 3,401,516 - +0.1 3,401,522 + -0.6 3,401,523 - -0.1 3,401,526 + -0.1 3,401,526 + +0.0 3,401,588 + -0.6 3,401,620 + -0.5 3,401,620 + +0.3 3,401,621 - -0.5 3,401,646 + -1.9 3,401,646 + +0.4 3,401,646 + +0.5 3,401,647 - -0.4 3,401,721 + +0.2 3,401,792 + -0.3 3,401,792 + +0.4 3,401,912 - ABZR86_RS15115 0.18 +0.8 3,401,963 + ABZR86_RS15115 0.22 +0.4 3,402,182 - ABZR86_RS15115 0.38 -1.4 3,402,789 + ABZR86_RS15115 0.84 -0.9 3,402,789 + ABZR86_RS15115 0.84 +0.0 3,402,789 + ABZR86_RS15115 0.84 -0.7 3,402,810 + ABZR86_RS15115 0.85 -1.3 3,402,810 + ABZR86_RS15115 0.85 -0.8 3,402,810 + ABZR86_RS15115 0.85 -0.4 3,402,811 - ABZR86_RS15115 0.85 -0.4
Or see this region's nucleotide sequence