Experiment: Fusidic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14895 and ABZR86_RS14900 overlap by 4 nucleotides ABZR86_RS14900 and ABZR86_RS14905 are separated by 16 nucleotides ABZR86_RS14905 and ABZR86_RS14910 overlap by 4 nucleotides
ABZR86_RS14895: ABZR86_RS14895 - glucoamylase family protein, at 3,347,137 to 3,348,531
_RS14895
ABZR86_RS14900: ABZR86_RS14900 - sugar ABC transporter substrate-binding protein, at 3,348,528 to 3,349,844
_RS14900
ABZR86_RS14905: ABZR86_RS14905 - sugar ABC transporter permease, at 3,349,861 to 3,350,739
_RS14905
ABZR86_RS14910: ABZR86_RS14910 - carbohydrate ABC transporter permease, at 3,350,736 to 3,351,557
_RS14910
Position (kb)
3348
3349
3350 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3347.539 kb on - strand, within ABZR86_RS14895 at 3347.539 kb on - strand, within ABZR86_RS14895 at 3347.539 kb on - strand, within ABZR86_RS14895 at 3347.578 kb on + strand, within ABZR86_RS14895 at 3347.578 kb on + strand, within ABZR86_RS14895 at 3347.579 kb on - strand, within ABZR86_RS14895 at 3347.581 kb on + strand, within ABZR86_RS14895 at 3347.581 kb on + strand, within ABZR86_RS14895 at 3347.631 kb on + strand, within ABZR86_RS14895 at 3347.635 kb on + strand, within ABZR86_RS14895 at 3347.636 kb on - strand, within ABZR86_RS14895 at 3347.734 kb on + strand, within ABZR86_RS14895 at 3347.734 kb on + strand, within ABZR86_RS14895 at 3347.734 kb on + strand, within ABZR86_RS14895 at 3347.734 kb on + strand, within ABZR86_RS14895 at 3347.734 kb on + strand, within ABZR86_RS14895 at 3347.735 kb on - strand, within ABZR86_RS14895 at 3347.735 kb on - strand, within ABZR86_RS14895 at 3347.735 kb on - strand, within ABZR86_RS14895 at 3347.755 kb on + strand, within ABZR86_RS14895 at 3347.755 kb on + strand, within ABZR86_RS14895 at 3347.755 kb on + strand, within ABZR86_RS14895 at 3347.755 kb on + strand, within ABZR86_RS14895 at 3347.756 kb on - strand, within ABZR86_RS14895 at 3347.756 kb on - strand, within ABZR86_RS14895 at 3347.824 kb on + strand, within ABZR86_RS14895 at 3347.824 kb on + strand, within ABZR86_RS14895 at 3347.824 kb on + strand, within ABZR86_RS14895 at 3347.825 kb on - strand, within ABZR86_RS14895 at 3347.825 kb on - strand, within ABZR86_RS14895 at 3347.960 kb on - strand, within ABZR86_RS14895 at 3347.986 kb on + strand, within ABZR86_RS14895 at 3347.986 kb on + strand, within ABZR86_RS14895 at 3347.986 kb on + strand, within ABZR86_RS14895 at 3347.987 kb on - strand, within ABZR86_RS14895 at 3347.987 kb on - strand, within ABZR86_RS14895 at 3347.987 kb on - strand, within ABZR86_RS14895 at 3348.045 kb on + strand, within ABZR86_RS14895 at 3348.045 kb on + strand, within ABZR86_RS14895 at 3348.046 kb on - strand, within ABZR86_RS14895 at 3348.046 kb on - strand, within ABZR86_RS14895 at 3348.046 kb on - strand, within ABZR86_RS14895 at 3348.046 kb on - strand, within ABZR86_RS14895 at 3348.046 kb on - strand, within ABZR86_RS14895 at 3348.046 kb on - strand, within ABZR86_RS14895 at 3348.046 kb on - strand, within ABZR86_RS14895 at 3348.046 kb on - strand, within ABZR86_RS14895 at 3348.124 kb on + strand, within ABZR86_RS14895 at 3348.151 kb on + strand, within ABZR86_RS14895 at 3348.152 kb on - strand, within ABZR86_RS14895 at 3348.268 kb on + strand, within ABZR86_RS14895 at 3348.268 kb on + strand, within ABZR86_RS14895 at 3348.268 kb on + strand, within ABZR86_RS14895 at 3348.268 kb on + strand, within ABZR86_RS14895 at 3348.268 kb on + strand, within ABZR86_RS14895 at 3348.269 kb on - strand, within ABZR86_RS14895 at 3348.269 kb on - strand, within ABZR86_RS14895 at 3348.269 kb on - strand, within ABZR86_RS14895 at 3348.269 kb on - strand, within ABZR86_RS14895 at 3348.269 kb on - strand, within ABZR86_RS14895 at 3348.269 kb on - strand, within ABZR86_RS14895 at 3348.269 kb on - strand, within ABZR86_RS14895 at 3348.271 kb on - strand, within ABZR86_RS14895 at 3348.277 kb on + strand, within ABZR86_RS14895 at 3348.366 kb on + strand, within ABZR86_RS14895 at 3348.410 kb on + strand at 3348.460 kb on + strand at 3348.460 kb on + strand at 3348.461 kb on - strand at 3348.461 kb on - strand at 3348.461 kb on - strand at 3348.655 kb on + strand at 3348.655 kb on + strand at 3348.655 kb on + strand at 3348.655 kb on + strand at 3348.655 kb on + strand at 3348.655 kb on + strand at 3348.655 kb on + strand at 3348.656 kb on - strand at 3348.656 kb on - strand at 3348.656 kb on - strand at 3348.836 kb on + strand, within ABZR86_RS14900 at 3348.836 kb on + strand, within ABZR86_RS14900 at 3348.907 kb on + strand, within ABZR86_RS14900 at 3348.908 kb on - strand, within ABZR86_RS14900 at 3348.908 kb on - strand, within ABZR86_RS14900 at 3348.924 kb on + strand, within ABZR86_RS14900 at 3348.924 kb on + strand, within ABZR86_RS14900 at 3348.925 kb on - strand, within ABZR86_RS14900 at 3348.970 kb on - strand, within ABZR86_RS14900 at 3348.984 kb on + strand, within ABZR86_RS14900 at 3348.984 kb on + strand, within ABZR86_RS14900 at 3348.985 kb on - strand, within ABZR86_RS14900 at 3349.248 kb on + strand, within ABZR86_RS14900 at 3349.248 kb on + strand, within ABZR86_RS14900 at 3349.248 kb on + strand, within ABZR86_RS14900 at 3349.249 kb on - strand, within ABZR86_RS14900 at 3349.249 kb on - strand, within ABZR86_RS14900 at 3349.249 kb on - strand, within ABZR86_RS14900 at 3349.335 kb on + strand, within ABZR86_RS14900 at 3349.344 kb on + strand, within ABZR86_RS14900 at 3349.344 kb on + strand, within ABZR86_RS14900 at 3349.344 kb on + strand, within ABZR86_RS14900 at 3349.344 kb on + strand, within ABZR86_RS14900 at 3349.344 kb on + strand, within ABZR86_RS14900 at 3349.345 kb on - strand, within ABZR86_RS14900 at 3349.345 kb on - strand, within ABZR86_RS14900 at 3349.345 kb on - strand, within ABZR86_RS14900 at 3349.561 kb on - strand, within ABZR86_RS14900 at 3349.561 kb on - strand, within ABZR86_RS14900 at 3349.561 kb on - strand, within ABZR86_RS14900 at 3349.621 kb on - strand, within ABZR86_RS14900 at 3349.697 kb on + strand, within ABZR86_RS14900 at 3349.697 kb on + strand, within ABZR86_RS14900 at 3349.698 kb on - strand, within ABZR86_RS14900 at 3349.969 kb on + strand, within ABZR86_RS14905 at 3349.979 kb on - strand, within ABZR86_RS14905 at 3350.027 kb on - strand, within ABZR86_RS14905 at 3350.081 kb on - strand, within ABZR86_RS14905 at 3350.236 kb on + strand, within ABZR86_RS14905 at 3350.254 kb on + strand, within ABZR86_RS14905 at 3350.255 kb on - strand, within ABZR86_RS14905 at 3350.255 kb on - strand, within ABZR86_RS14905 at 3350.269 kb on + strand, within ABZR86_RS14905 at 3350.269 kb on + strand, within ABZR86_RS14905 at 3350.269 kb on + strand, within ABZR86_RS14905 at 3350.269 kb on + strand, within ABZR86_RS14905 at 3350.270 kb on - strand, within ABZR86_RS14905 at 3350.371 kb on + strand, within ABZR86_RS14905 at 3350.422 kb on + strand, within ABZR86_RS14905 at 3350.521 kb on - strand, within ABZR86_RS14905 at 3350.605 kb on + strand, within ABZR86_RS14905 at 3350.606 kb on - strand, within ABZR86_RS14905 at 3350.614 kb on + strand, within ABZR86_RS14905 at 3350.614 kb on + strand, within ABZR86_RS14905 at 3350.615 kb on - strand, within ABZR86_RS14905 at 3350.615 kb on - strand, within ABZR86_RS14905 at 3350.615 kb on - strand, within ABZR86_RS14905
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml remove 3,347,539 - ABZR86_RS14895 0.29 +0.6 3,347,539 - ABZR86_RS14895 0.29 +0.3 3,347,539 - ABZR86_RS14895 0.29 -0.1 3,347,578 + ABZR86_RS14895 0.32 +0.1 3,347,578 + ABZR86_RS14895 0.32 -0.5 3,347,579 - ABZR86_RS14895 0.32 +0.8 3,347,581 + ABZR86_RS14895 0.32 -2.1 3,347,581 + ABZR86_RS14895 0.32 -0.4 3,347,631 + ABZR86_RS14895 0.35 -0.3 3,347,635 + ABZR86_RS14895 0.36 -0.6 3,347,636 - ABZR86_RS14895 0.36 +0.2 3,347,734 + ABZR86_RS14895 0.43 +0.9 3,347,734 + ABZR86_RS14895 0.43 -0.7 3,347,734 + ABZR86_RS14895 0.43 -1.4 3,347,734 + ABZR86_RS14895 0.43 +0.2 3,347,734 + ABZR86_RS14895 0.43 -0.2 3,347,735 - ABZR86_RS14895 0.43 +0.6 3,347,735 - ABZR86_RS14895 0.43 +0.7 3,347,735 - ABZR86_RS14895 0.43 -0.1 3,347,755 + ABZR86_RS14895 0.44 +0.9 3,347,755 + ABZR86_RS14895 0.44 +0.7 3,347,755 + ABZR86_RS14895 0.44 +1.4 3,347,755 + ABZR86_RS14895 0.44 +0.3 3,347,756 - ABZR86_RS14895 0.44 -1.6 3,347,756 - ABZR86_RS14895 0.44 -0.1 3,347,824 + ABZR86_RS14895 0.49 +0.4 3,347,824 + ABZR86_RS14895 0.49 +0.0 3,347,824 + ABZR86_RS14895 0.49 -1.4 3,347,825 - ABZR86_RS14895 0.49 -0.5 3,347,825 - ABZR86_RS14895 0.49 +0.1 3,347,960 - ABZR86_RS14895 0.59 +0.3 3,347,986 + ABZR86_RS14895 0.61 +0.7 3,347,986 + ABZR86_RS14895 0.61 -0.6 3,347,986 + ABZR86_RS14895 0.61 -0.1 3,347,987 - ABZR86_RS14895 0.61 +0.1 3,347,987 - ABZR86_RS14895 0.61 +0.6 3,347,987 - ABZR86_RS14895 0.61 -0.4 3,348,045 + ABZR86_RS14895 0.65 -0.2 3,348,045 + ABZR86_RS14895 0.65 +1.0 3,348,046 - ABZR86_RS14895 0.65 +0.1 3,348,046 - ABZR86_RS14895 0.65 -0.3 3,348,046 - ABZR86_RS14895 0.65 -0.9 3,348,046 - ABZR86_RS14895 0.65 +0.7 3,348,046 - ABZR86_RS14895 0.65 -0.4 3,348,046 - ABZR86_RS14895 0.65 -0.4 3,348,046 - ABZR86_RS14895 0.65 -0.4 3,348,046 - ABZR86_RS14895 0.65 +0.0 3,348,124 + ABZR86_RS14895 0.71 +2.1 3,348,151 + ABZR86_RS14895 0.73 -0.2 3,348,152 - ABZR86_RS14895 0.73 +1.1 3,348,268 + ABZR86_RS14895 0.81 +0.3 3,348,268 + ABZR86_RS14895 0.81 +0.0 3,348,268 + ABZR86_RS14895 0.81 +0.2 3,348,268 + ABZR86_RS14895 0.81 +0.6 3,348,268 + ABZR86_RS14895 0.81 +0.8 3,348,269 - ABZR86_RS14895 0.81 -0.4 3,348,269 - ABZR86_RS14895 0.81 -0.8 3,348,269 - ABZR86_RS14895 0.81 +0.5 3,348,269 - ABZR86_RS14895 0.81 -0.3 3,348,269 - ABZR86_RS14895 0.81 -1.9 3,348,269 - ABZR86_RS14895 0.81 +0.3 3,348,269 - ABZR86_RS14895 0.81 -0.5 3,348,271 - ABZR86_RS14895 0.81 +0.2 3,348,277 + ABZR86_RS14895 0.82 +0.1 3,348,366 + ABZR86_RS14895 0.88 +0.3 3,348,410 + -0.4 3,348,460 + -0.7 3,348,460 + -1.3 3,348,461 - +0.2 3,348,461 - +1.0 3,348,461 - -0.2 3,348,655 + +0.1 3,348,655 + -0.6 3,348,655 + -1.1 3,348,655 + -0.6 3,348,655 + -0.5 3,348,655 + -0.1 3,348,655 + -0.3 3,348,656 - +0.3 3,348,656 - -0.8 3,348,656 - -0.6 3,348,836 + ABZR86_RS14900 0.23 -0.1 3,348,836 + ABZR86_RS14900 0.23 -0.3 3,348,907 + ABZR86_RS14900 0.29 -3.2 3,348,908 - ABZR86_RS14900 0.29 +0.8 3,348,908 - ABZR86_RS14900 0.29 +0.3 3,348,924 + ABZR86_RS14900 0.30 +1.4 3,348,924 + ABZR86_RS14900 0.30 -1.4 3,348,925 - ABZR86_RS14900 0.30 +0.9 3,348,970 - ABZR86_RS14900 0.34 -0.6 3,348,984 + ABZR86_RS14900 0.35 +0.5 3,348,984 + ABZR86_RS14900 0.35 -0.0 3,348,985 - ABZR86_RS14900 0.35 -0.4 3,349,248 + ABZR86_RS14900 0.55 +0.5 3,349,248 + ABZR86_RS14900 0.55 -0.1 3,349,248 + ABZR86_RS14900 0.55 +0.8 3,349,249 - ABZR86_RS14900 0.55 +0.0 3,349,249 - ABZR86_RS14900 0.55 +0.1 3,349,249 - ABZR86_RS14900 0.55 -0.9 3,349,335 + ABZR86_RS14900 0.61 +0.3 3,349,344 + ABZR86_RS14900 0.62 -0.2 3,349,344 + ABZR86_RS14900 0.62 +0.3 3,349,344 + ABZR86_RS14900 0.62 -0.0 3,349,344 + ABZR86_RS14900 0.62 -0.5 3,349,344 + ABZR86_RS14900 0.62 +0.5 3,349,345 - ABZR86_RS14900 0.62 +0.8 3,349,345 - ABZR86_RS14900 0.62 +0.7 3,349,345 - ABZR86_RS14900 0.62 -0.6 3,349,561 - ABZR86_RS14900 0.78 +0.7 3,349,561 - ABZR86_RS14900 0.78 +0.3 3,349,561 - ABZR86_RS14900 0.78 +0.2 3,349,621 - ABZR86_RS14900 0.83 -2.0 3,349,697 + ABZR86_RS14900 0.89 -0.8 3,349,697 + ABZR86_RS14900 0.89 -0.5 3,349,698 - ABZR86_RS14900 0.89 -2.5 3,349,969 + ABZR86_RS14905 0.12 -0.4 3,349,979 - ABZR86_RS14905 0.13 -0.3 3,350,027 - ABZR86_RS14905 0.19 +0.3 3,350,081 - ABZR86_RS14905 0.25 -0.5 3,350,236 + ABZR86_RS14905 0.43 -0.1 3,350,254 + ABZR86_RS14905 0.45 +0.3 3,350,255 - ABZR86_RS14905 0.45 +0.6 3,350,255 - ABZR86_RS14905 0.45 +0.3 3,350,269 + ABZR86_RS14905 0.46 -0.1 3,350,269 + ABZR86_RS14905 0.46 -0.2 3,350,269 + ABZR86_RS14905 0.46 -0.0 3,350,269 + ABZR86_RS14905 0.46 +0.6 3,350,270 - ABZR86_RS14905 0.47 +0.3 3,350,371 + ABZR86_RS14905 0.58 +0.5 3,350,422 + ABZR86_RS14905 0.64 -0.6 3,350,521 - ABZR86_RS14905 0.75 -0.0 3,350,605 + ABZR86_RS14905 0.85 -0.1 3,350,606 - ABZR86_RS14905 0.85 +0.3 3,350,614 + ABZR86_RS14905 0.86 -0.3 3,350,614 + ABZR86_RS14905 0.86 -0.2 3,350,615 - ABZR86_RS14905 0.86 -0.6 3,350,615 - ABZR86_RS14905 0.86 -0.7 3,350,615 - ABZR86_RS14905 0.86 +0.3
Or see this region's nucleotide sequence