Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS14690

Experiment: Fusidic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS14680 and ABZR86_RS14685 are separated by 167 nucleotidesABZR86_RS14685 and ABZR86_RS14690 are separated by 22 nucleotidesABZR86_RS14690 and ABZR86_RS14695 are separated by 85 nucleotidesABZR86_RS14695 and ABZR86_RS14700 are separated by 111 nucleotides ABZR86_RS14680: ABZR86_RS14680 - M4 family metallopeptidase, at 3,287,425 to 3,289,026 _RS14680 ABZR86_RS14685: ABZR86_RS14685 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 3,289,194 to 3,289,844 _RS14685 ABZR86_RS14690: ABZR86_RS14690 - phosphogluconate dehydratase, at 3,289,867 to 3,291,687 _RS14690 ABZR86_RS14695: ABZR86_RS14695 - 6-phosphogluconolactonase, at 3,291,773 to 3,292,486 _RS14695 ABZR86_RS14700: ABZR86_RS14700 - glucose-6-phosphate dehydrogenase, at 3,292,598 to 3,294,067 _RS14700 Position (kb) 3289 3290 3291 3292Strain fitness (log2 ratio) -3 -2 -1 0 1at 3288.895 kb on + strandat 3288.895 kb on + strandat 3288.896 kb on - strandat 3288.896 kb on - strandat 3288.896 kb on - strandat 3289.078 kb on + strandat 3289.078 kb on + strandat 3289.078 kb on + strandat 3289.079 kb on - strandat 3289.079 kb on - strandat 3289.079 kb on - strandat 3289.079 kb on - strandat 3289.079 kb on - strandat 3289.177 kb on + strandat 3289.190 kb on + strandat 3289.190 kb on + strandat 3289.190 kb on + strandat 3289.190 kb on + strandat 3289.190 kb on + strandat 3289.190 kb on + strandat 3289.191 kb on - strandat 3289.191 kb on - strandat 3290.654 kb on + strand, within ABZR86_RS14690at 3290.667 kb on - strand, within ABZR86_RS14690at 3290.835 kb on + strand, within ABZR86_RS14690at 3290.835 kb on + strand, within ABZR86_RS14690at 3291.087 kb on - strand, within ABZR86_RS14690at 3291.227 kb on + strand, within ABZR86_RS14690at 3291.227 kb on + strand, within ABZR86_RS14690at 3291.227 kb on + strand, within ABZR86_RS14690at 3291.228 kb on - strand, within ABZR86_RS14690at 3291.228 kb on - strand, within ABZR86_RS14690at 3291.228 kb on - strand, within ABZR86_RS14690at 3291.425 kb on + strand, within ABZR86_RS14690at 3291.425 kb on + strand, within ABZR86_RS14690at 3291.453 kb on + strand, within ABZR86_RS14690at 3291.455 kb on + strand, within ABZR86_RS14690at 3291.456 kb on - strand, within ABZR86_RS14690at 3292.167 kb on + strand, within ABZR86_RS14695at 3292.539 kb on - strandat 3292.599 kb on + strandat 3292.679 kb on - strandat 3292.680 kb on + strandat 3292.681 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml
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3,288,895 + -1.9
3,288,895 + -1.1
3,288,896 - +0.3
3,288,896 - +0.2
3,288,896 - -0.2
3,289,078 + +0.6
3,289,078 + -0.5
3,289,078 + -1.5
3,289,079 - +0.0
3,289,079 - +0.2
3,289,079 - -0.2
3,289,079 - -0.1
3,289,079 - +0.7
3,289,177 + +0.0
3,289,190 + -0.2
3,289,190 + -0.3
3,289,190 + +0.9
3,289,190 + +0.6
3,289,190 + -2.0
3,289,190 + -1.6
3,289,191 - +0.6
3,289,191 - -0.2
3,290,654 + ABZR86_RS14690 0.43 -1.2
3,290,667 - ABZR86_RS14690 0.44 -0.8
3,290,835 + ABZR86_RS14690 0.53 -2.9
3,290,835 + ABZR86_RS14690 0.53 -1.4
3,291,087 - ABZR86_RS14690 0.67 -1.9
3,291,227 + ABZR86_RS14690 0.75 -2.8
3,291,227 + ABZR86_RS14690 0.75 -1.8
3,291,227 + ABZR86_RS14690 0.75 -1.4
3,291,228 - ABZR86_RS14690 0.75 -1.3
3,291,228 - ABZR86_RS14690 0.75 -0.8
3,291,228 - ABZR86_RS14690 0.75 -0.2
3,291,425 + ABZR86_RS14690 0.86 -2.6
3,291,425 + ABZR86_RS14690 0.86 -2.2
3,291,453 + ABZR86_RS14690 0.87 -0.8
3,291,455 + ABZR86_RS14690 0.87 -0.9
3,291,456 - ABZR86_RS14690 0.87 -3.5
3,292,167 + ABZR86_RS14695 0.55 -0.4
3,292,539 - +0.4
3,292,599 + -0.2
3,292,679 - -0.6
3,292,680 + -0.6
3,292,681 - +1.0

Or see this region's nucleotide sequence