Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS13685

Experiment: Fusidic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS13675 and ABZR86_RS13680 are separated by 8 nucleotidesABZR86_RS13680 and ABZR86_RS13685 are separated by 7 nucleotidesABZR86_RS13685 and ABZR86_RS13690 overlap by 4 nucleotides ABZR86_RS13675: ABZR86_RS13675 - LysM domain-containing protein, at 3,056,134 to 3,057,501 _RS13675 ABZR86_RS13680: ABZR86_RS13680 - type III secretion HpaP family protein, at 3,057,510 to 3,058,220 _RS13680 ABZR86_RS13685: ABZR86_RS13685 - hypothetical protein, at 3,058,228 to 3,058,716 _RS13685 ABZR86_RS13690: ABZR86_RS13690 - FliI/YscN family ATPase, at 3,058,713 to 3,060,062 _RS13690 Position (kb) 3058 3059Strain fitness (log2 ratio) -2 -1 0 1at 3057.927 kb on - strand, within ABZR86_RS13680at 3058.163 kb on + strandat 3058.163 kb on + strandat 3058.163 kb on + strandat 3058.169 kb on + strandat 3058.169 kb on + strandat 3058.169 kb on + strandat 3058.170 kb on - strandat 3058.170 kb on - strandat 3058.221 kb on - strandat 3058.221 kb on - strandat 3058.885 kb on + strand, within ABZR86_RS13690at 3058.897 kb on + strand, within ABZR86_RS13690at 3059.023 kb on + strand, within ABZR86_RS13690at 3059.023 kb on + strand, within ABZR86_RS13690at 3059.023 kb on + strand, within ABZR86_RS13690at 3059.023 kb on + strand, within ABZR86_RS13690at 3059.023 kb on + strand, within ABZR86_RS13690at 3059.023 kb on + strand, within ABZR86_RS13690at 3059.023 kb on + strand, within ABZR86_RS13690at 3059.024 kb on - strand, within ABZR86_RS13690at 3059.024 kb on - strand, within ABZR86_RS13690at 3059.024 kb on - strand, within ABZR86_RS13690at 3059.024 kb on - strand, within ABZR86_RS13690at 3059.024 kb on - strand, within ABZR86_RS13690at 3059.024 kb on - strand, within ABZR86_RS13690at 3059.024 kb on - strand, within ABZR86_RS13690at 3059.024 kb on - strand, within ABZR86_RS13690at 3059.024 kb on - strand, within ABZR86_RS13690at 3059.027 kb on + strand, within ABZR86_RS13690at 3059.027 kb on + strand, within ABZR86_RS13690at 3059.027 kb on + strand, within ABZR86_RS13690at 3059.027 kb on + strand, within ABZR86_RS13690at 3059.028 kb on - strand, within ABZR86_RS13690at 3059.028 kb on - strand, within ABZR86_RS13690at 3059.028 kb on - strand, within ABZR86_RS13690at 3059.028 kb on - strand, within ABZR86_RS13690at 3059.101 kb on + strand, within ABZR86_RS13690at 3059.102 kb on - strand, within ABZR86_RS13690at 3059.102 kb on - strand, within ABZR86_RS13690at 3059.296 kb on + strand, within ABZR86_RS13690at 3059.296 kb on + strand, within ABZR86_RS13690at 3059.296 kb on + strand, within ABZR86_RS13690at 3059.296 kb on + strand, within ABZR86_RS13690at 3059.297 kb on - strand, within ABZR86_RS13690at 3059.297 kb on - strand, within ABZR86_RS13690at 3059.297 kb on - strand, within ABZR86_RS13690at 3059.297 kb on - strand, within ABZR86_RS13690at 3059.644 kb on + strand, within ABZR86_RS13690at 3059.644 kb on + strand, within ABZR86_RS13690at 3059.645 kb on - strand, within ABZR86_RS13690at 3059.645 kb on - strand, within ABZR86_RS13690

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml
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3,057,927 - ABZR86_RS13680 0.59 -0.8
3,058,163 + +0.2
3,058,163 + -1.1
3,058,163 + -0.4
3,058,169 + +0.2
3,058,169 + +0.4
3,058,169 + +0.4
3,058,170 - +0.4
3,058,170 - -1.7
3,058,221 - +0.6
3,058,221 - +0.1
3,058,885 + ABZR86_RS13690 0.13 +0.7
3,058,897 + ABZR86_RS13690 0.14 -0.3
3,059,023 + ABZR86_RS13690 0.23 -0.5
3,059,023 + ABZR86_RS13690 0.23 +0.0
3,059,023 + ABZR86_RS13690 0.23 -0.0
3,059,023 + ABZR86_RS13690 0.23 +0.5
3,059,023 + ABZR86_RS13690 0.23 +0.1
3,059,023 + ABZR86_RS13690 0.23 +1.0
3,059,023 + ABZR86_RS13690 0.23 +0.2
3,059,024 - ABZR86_RS13690 0.23 -0.1
3,059,024 - ABZR86_RS13690 0.23 +0.3
3,059,024 - ABZR86_RS13690 0.23 +0.2
3,059,024 - ABZR86_RS13690 0.23 -0.4
3,059,024 - ABZR86_RS13690 0.23 -0.5
3,059,024 - ABZR86_RS13690 0.23 -1.0
3,059,024 - ABZR86_RS13690 0.23 +0.8
3,059,024 - ABZR86_RS13690 0.23 +0.9
3,059,024 - ABZR86_RS13690 0.23 +0.5
3,059,027 + ABZR86_RS13690 0.23 -0.4
3,059,027 + ABZR86_RS13690 0.23 -0.3
3,059,027 + ABZR86_RS13690 0.23 +0.0
3,059,027 + ABZR86_RS13690 0.23 -1.9
3,059,028 - ABZR86_RS13690 0.23 +0.4
3,059,028 - ABZR86_RS13690 0.23 +1.1
3,059,028 - ABZR86_RS13690 0.23 -0.7
3,059,028 - ABZR86_RS13690 0.23 +0.5
3,059,101 + ABZR86_RS13690 0.29 -0.5
3,059,102 - ABZR86_RS13690 0.29 +0.0
3,059,102 - ABZR86_RS13690 0.29 +0.1
3,059,296 + ABZR86_RS13690 0.43 -0.2
3,059,296 + ABZR86_RS13690 0.43 +0.2
3,059,296 + ABZR86_RS13690 0.43 -0.4
3,059,296 + ABZR86_RS13690 0.43 -0.6
3,059,297 - ABZR86_RS13690 0.43 -1.3
3,059,297 - ABZR86_RS13690 0.43 -0.0
3,059,297 - ABZR86_RS13690 0.43 +1.2
3,059,297 - ABZR86_RS13690 0.43 +0.6
3,059,644 + ABZR86_RS13690 0.69 +0.2
3,059,644 + ABZR86_RS13690 0.69 +0.7
3,059,645 - ABZR86_RS13690 0.69 -0.1
3,059,645 - ABZR86_RS13690 0.69 -0.4

Or see this region's nucleotide sequence