Experiment: Fusidic 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS09135 and ABZR86_RS09140 are separated by 65 nucleotides ABZR86_RS09140 and ABZR86_RS09145 are separated by 118 nucleotides ABZR86_RS09145 and ABZR86_RS09150 are separated by 2 nucleotides ABZR86_RS09150 and ABZR86_RS09155 are separated by 144 nucleotides
ABZR86_RS09135: ABZR86_RS09135 - thioredoxin, at 2,030,653 to 2,031,513
_RS09135
ABZR86_RS09140: ABZR86_RS09140 - DUF4442 domain-containing protein, at 2,031,579 to 2,032,040
_RS09140
ABZR86_RS09145: ABZR86_RS09145 - hypothetical protein, at 2,032,159 to 2,032,809
_RS09145
ABZR86_RS09150: ABZR86_RS09150 - sigma-70 family RNA polymerase sigma factor, at 2,032,812 to 2,033,324
_RS09150
ABZR86_RS09155: ABZR86_RS09155 - DUF502 domain-containing protein, at 2,033,469 to 2,034,140
_RS09155
Position (kb)
2032
2033 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2031.481 kb on + strand at 2031.482 kb on - strand at 2031.524 kb on - strand at 2031.533 kb on + strand at 2031.533 kb on + strand at 2031.534 kb on - strand at 2031.534 kb on - strand at 2031.540 kb on - strand at 2031.544 kb on + strand at 2031.544 kb on + strand at 2031.544 kb on + strand at 2031.545 kb on - strand at 2031.545 kb on - strand at 2031.555 kb on - strand at 2031.555 kb on - strand at 2031.666 kb on + strand, within ABZR86_RS09140 at 2031.667 kb on - strand, within ABZR86_RS09140 at 2031.714 kb on + strand, within ABZR86_RS09140 at 2031.714 kb on + strand, within ABZR86_RS09140 at 2031.714 kb on + strand, within ABZR86_RS09140 at 2031.714 kb on + strand, within ABZR86_RS09140 at 2031.715 kb on - strand, within ABZR86_RS09140 at 2031.801 kb on + strand, within ABZR86_RS09140 at 2031.862 kb on - strand, within ABZR86_RS09140 at 2032.002 kb on + strand at 2032.002 kb on + strand at 2032.002 kb on + strand at 2032.002 kb on + strand at 2032.003 kb on - strand at 2032.003 kb on - strand at 2032.003 kb on - strand at 2032.003 kb on - strand at 2032.003 kb on - strand at 2032.003 kb on - strand at 2032.038 kb on + strand at 2032.039 kb on - strand at 2032.050 kb on + strand at 2032.050 kb on + strand at 2032.051 kb on - strand at 2032.051 kb on - strand at 2032.143 kb on + strand at 2032.143 kb on + strand at 2032.143 kb on + strand at 2032.143 kb on + strand at 2032.143 kb on + strand at 2032.143 kb on + strand at 2032.144 kb on - strand at 2032.218 kb on - strand at 2032.352 kb on - strand, within ABZR86_RS09145 at 2032.560 kb on - strand, within ABZR86_RS09145 at 2032.560 kb on - strand, within ABZR86_RS09145 at 2032.918 kb on + strand, within ABZR86_RS09150 at 2032.918 kb on + strand, within ABZR86_RS09150 at 2032.919 kb on - strand, within ABZR86_RS09150 at 2033.298 kb on + strand at 2033.299 kb on - strand at 2033.299 kb on - strand at 2033.299 kb on - strand at 2033.431 kb on + strand at 2033.431 kb on + strand at 2033.493 kb on + strand at 2033.494 kb on - strand at 2033.494 kb on - strand at 2033.703 kb on + strand, within ABZR86_RS09155 at 2033.703 kb on + strand, within ABZR86_RS09155 at 2033.703 kb on + strand, within ABZR86_RS09155 at 2033.704 kb on - strand, within ABZR86_RS09155
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml remove 2,031,481 + -0.5 2,031,482 - -0.1 2,031,524 - -0.3 2,031,533 + +0.1 2,031,533 + -0.4 2,031,534 - +0.1 2,031,534 - -0.1 2,031,540 - +0.3 2,031,544 + -0.8 2,031,544 + +2.9 2,031,544 + -0.3 2,031,545 - +0.2 2,031,545 - +0.4 2,031,555 - -1.0 2,031,555 - -1.2 2,031,666 + ABZR86_RS09140 0.19 -0.1 2,031,667 - ABZR86_RS09140 0.19 +0.6 2,031,714 + ABZR86_RS09140 0.29 +0.4 2,031,714 + ABZR86_RS09140 0.29 -2.4 2,031,714 + ABZR86_RS09140 0.29 -0.5 2,031,714 + ABZR86_RS09140 0.29 +1.0 2,031,715 - ABZR86_RS09140 0.29 +0.6 2,031,801 + ABZR86_RS09140 0.48 -0.7 2,031,862 - ABZR86_RS09140 0.61 +0.4 2,032,002 + -0.1 2,032,002 + +0.6 2,032,002 + -0.3 2,032,002 + -0.4 2,032,003 - +0.6 2,032,003 - -0.8 2,032,003 - -1.0 2,032,003 - +0.8 2,032,003 - +0.8 2,032,003 - -0.1 2,032,038 + +0.4 2,032,039 - +0.6 2,032,050 + -0.7 2,032,050 + +0.0 2,032,051 - +0.6 2,032,051 - -0.3 2,032,143 + +0.4 2,032,143 + -0.5 2,032,143 + +0.3 2,032,143 + +1.2 2,032,143 + +0.3 2,032,143 + +1.2 2,032,144 - +1.5 2,032,218 - -0.6 2,032,352 - ABZR86_RS09145 0.30 -0.7 2,032,560 - ABZR86_RS09145 0.62 -0.6 2,032,560 - ABZR86_RS09145 0.62 -2.5 2,032,918 + ABZR86_RS09150 0.21 -0.2 2,032,918 + ABZR86_RS09150 0.21 +0.1 2,032,919 - ABZR86_RS09150 0.21 -0.5 2,033,298 + +0.5 2,033,299 - +1.1 2,033,299 - -0.8 2,033,299 - -0.9 2,033,431 + -2.4 2,033,431 + +0.1 2,033,493 + -0.1 2,033,494 - +1.9 2,033,494 - -0.3 2,033,703 + ABZR86_RS09155 0.35 +0.1 2,033,703 + ABZR86_RS09155 0.35 -0.3 2,033,703 + ABZR86_RS09155 0.35 -0.3 2,033,704 - ABZR86_RS09155 0.35 -0.4
Or see this region's nucleotide sequence