Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00655

Experiment: Fusidic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00650 and ABZR86_RS00655 are separated by 124 nucleotidesABZR86_RS00655 and ABZR86_RS00660 are separated by 136 nucleotides ABZR86_RS00650: ABZR86_RS00650 - TonB-dependent receptor, at 126,461 to 128,872 _RS00650 ABZR86_RS00655: ABZR86_RS00655 - CinA family protein, at 128,997 to 129,506 _RS00655 ABZR86_RS00660: ABZR86_RS00660 - recombinase RecA, at 129,643 to 130,677 _RS00660 Position (kb) 128 129 130Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 128.099 kb on + strand, within ABZR86_RS00650at 128.099 kb on + strand, within ABZR86_RS00650at 128.180 kb on + strand, within ABZR86_RS00650at 128.181 kb on - strand, within ABZR86_RS00650at 128.207 kb on + strand, within ABZR86_RS00650at 128.207 kb on + strand, within ABZR86_RS00650at 128.208 kb on - strand, within ABZR86_RS00650at 128.208 kb on - strand, within ABZR86_RS00650at 128.208 kb on - strand, within ABZR86_RS00650at 128.403 kb on - strand, within ABZR86_RS00650at 128.495 kb on + strand, within ABZR86_RS00650at 128.495 kb on + strand, within ABZR86_RS00650at 128.495 kb on + strand, within ABZR86_RS00650at 128.495 kb on + strand, within ABZR86_RS00650at 128.495 kb on + strand, within ABZR86_RS00650at 128.495 kb on + strand, within ABZR86_RS00650at 128.495 kb on + strand, within ABZR86_RS00650at 128.495 kb on + strand, within ABZR86_RS00650at 128.495 kb on + strand, within ABZR86_RS00650at 128.496 kb on - strand, within ABZR86_RS00650at 128.496 kb on - strand, within ABZR86_RS00650at 128.496 kb on - strand, within ABZR86_RS00650at 128.496 kb on - strand, within ABZR86_RS00650at 128.496 kb on - strand, within ABZR86_RS00650at 128.496 kb on - strand, within ABZR86_RS00650at 128.496 kb on - strand, within ABZR86_RS00650at 128.501 kb on + strand, within ABZR86_RS00650at 128.501 kb on + strand, within ABZR86_RS00650at 128.501 kb on + strand, within ABZR86_RS00650at 128.501 kb on + strand, within ABZR86_RS00650at 128.501 kb on + strand, within ABZR86_RS00650at 128.501 kb on + strand, within ABZR86_RS00650at 128.501 kb on + strand, within ABZR86_RS00650at 128.501 kb on + strand, within ABZR86_RS00650at 128.502 kb on - strand, within ABZR86_RS00650at 128.502 kb on - strand, within ABZR86_RS00650at 128.502 kb on - strand, within ABZR86_RS00650at 128.502 kb on - strand, within ABZR86_RS00650at 128.502 kb on - strand, within ABZR86_RS00650at 128.502 kb on - strand, within ABZR86_RS00650at 128.502 kb on - strand, within ABZR86_RS00650at 128.576 kb on + strand, within ABZR86_RS00650at 128.576 kb on + strand, within ABZR86_RS00650at 128.577 kb on - strand, within ABZR86_RS00650at 128.577 kb on - strand, within ABZR86_RS00650at 128.577 kb on - strand, within ABZR86_RS00650at 128.708 kb on + strandat 128.709 kb on - strandat 128.726 kb on - strandat 128.861 kb on + strandat 128.932 kb on + strandat 128.932 kb on + strandat 128.939 kb on + strandat 128.939 kb on + strandat 128.939 kb on + strandat 128.940 kb on - strandat 128.940 kb on - strandat 128.940 kb on - strandat 129.132 kb on - strand, within ABZR86_RS00655at 129.180 kb on + strand, within ABZR86_RS00655at 129.180 kb on + strand, within ABZR86_RS00655at 129.180 kb on + strand, within ABZR86_RS00655at 129.180 kb on + strand, within ABZR86_RS00655at 129.180 kb on + strand, within ABZR86_RS00655at 129.180 kb on + strand, within ABZR86_RS00655at 129.181 kb on - strand, within ABZR86_RS00655at 129.181 kb on - strand, within ABZR86_RS00655at 129.181 kb on - strand, within ABZR86_RS00655at 129.181 kb on - strand, within ABZR86_RS00655at 129.186 kb on + strand, within ABZR86_RS00655at 129.186 kb on + strand, within ABZR86_RS00655at 129.186 kb on + strand, within ABZR86_RS00655at 129.186 kb on + strand, within ABZR86_RS00655at 129.187 kb on - strand, within ABZR86_RS00655at 129.187 kb on - strand, within ABZR86_RS00655at 129.187 kb on - strand, within ABZR86_RS00655at 129.520 kb on - strandat 129.547 kb on + strandat 129.947 kb on - strand, within ABZR86_RS00660at 129.947 kb on - strand, within ABZR86_RS00660at 130.291 kb on + strand, within ABZR86_RS00660

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml
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128,099 + ABZR86_RS00650 0.68 -4.4
128,099 + ABZR86_RS00650 0.68 -3.6
128,180 + ABZR86_RS00650 0.71 -4.9
128,181 - ABZR86_RS00650 0.71 -4.9
128,207 + ABZR86_RS00650 0.72 -3.3
128,207 + ABZR86_RS00650 0.72 -2.9
128,208 - ABZR86_RS00650 0.72 -2.8
128,208 - ABZR86_RS00650 0.72 -3.0
128,208 - ABZR86_RS00650 0.72 -1.8
128,403 - ABZR86_RS00650 0.81 -2.3
128,495 + ABZR86_RS00650 0.84 -3.0
128,495 + ABZR86_RS00650 0.84 -2.3
128,495 + ABZR86_RS00650 0.84 -5.4
128,495 + ABZR86_RS00650 0.84 -4.4
128,495 + ABZR86_RS00650 0.84 -3.8
128,495 + ABZR86_RS00650 0.84 -5.2
128,495 + ABZR86_RS00650 0.84 -4.7
128,495 + ABZR86_RS00650 0.84 -3.9
128,495 + ABZR86_RS00650 0.84 -5.6
128,496 - ABZR86_RS00650 0.84 -4.7
128,496 - ABZR86_RS00650 0.84 -2.1
128,496 - ABZR86_RS00650 0.84 -4.4
128,496 - ABZR86_RS00650 0.84 -0.8
128,496 - ABZR86_RS00650 0.84 -4.5
128,496 - ABZR86_RS00650 0.84 -4.1
128,496 - ABZR86_RS00650 0.84 -4.4
128,501 + ABZR86_RS00650 0.85 -4.1
128,501 + ABZR86_RS00650 0.85 -3.9
128,501 + ABZR86_RS00650 0.85 -4.9
128,501 + ABZR86_RS00650 0.85 -5.4
128,501 + ABZR86_RS00650 0.85 -4.4
128,501 + ABZR86_RS00650 0.85 -3.6
128,501 + ABZR86_RS00650 0.85 -3.7
128,501 + ABZR86_RS00650 0.85 -2.1
128,502 - ABZR86_RS00650 0.85 -1.7
128,502 - ABZR86_RS00650 0.85 -4.2
128,502 - ABZR86_RS00650 0.85 -4.1
128,502 - ABZR86_RS00650 0.85 -2.7
128,502 - ABZR86_RS00650 0.85 -3.0
128,502 - ABZR86_RS00650 0.85 -1.9
128,502 - ABZR86_RS00650 0.85 -4.0
128,576 + ABZR86_RS00650 0.88 -3.2
128,576 + ABZR86_RS00650 0.88 -3.0
128,577 - ABZR86_RS00650 0.88 -3.5
128,577 - ABZR86_RS00650 0.88 -3.0
128,577 - ABZR86_RS00650 0.88 -5.1
128,708 + -2.8
128,709 - -2.6
128,726 - -3.9
128,861 + -2.2
128,932 + -0.7
128,932 + -0.8
128,939 + +0.7
128,939 + +0.5
128,939 + +0.8
128,940 - -1.4
128,940 - -1.0
128,940 - -0.6
129,132 - ABZR86_RS00655 0.26 -0.9
129,180 + ABZR86_RS00655 0.36 -0.5
129,180 + ABZR86_RS00655 0.36 -0.6
129,180 + ABZR86_RS00655 0.36 +0.1
129,180 + ABZR86_RS00655 0.36 -0.1
129,180 + ABZR86_RS00655 0.36 +0.3
129,180 + ABZR86_RS00655 0.36 -0.1
129,181 - ABZR86_RS00655 0.36 +1.1
129,181 - ABZR86_RS00655 0.36 +0.1
129,181 - ABZR86_RS00655 0.36 -0.4
129,181 - ABZR86_RS00655 0.36 +1.0
129,186 + ABZR86_RS00655 0.37 -1.4
129,186 + ABZR86_RS00655 0.37 +0.3
129,186 + ABZR86_RS00655 0.37 -0.0
129,186 + ABZR86_RS00655 0.37 +0.3
129,187 - ABZR86_RS00655 0.37 -0.7
129,187 - ABZR86_RS00655 0.37 +0.2
129,187 - ABZR86_RS00655 0.37 +1.2
129,520 - +0.1
129,547 + +1.0
129,947 - ABZR86_RS00660 0.29 -0.1
129,947 - ABZR86_RS00660 0.29 -1.1
130,291 + ABZR86_RS00660 0.63 -0.4

Or see this region's nucleotide sequence