Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS00460

Experiment: Fusidic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS00455 and ABZR86_RS00460 are separated by 421 nucleotidesABZR86_RS00460 and ABZR86_RS00465 are separated by 217 nucleotides ABZR86_RS00455: ABZR86_RS00455 - cytochrome c, at 86,812 to 87,621 _RS00455 ABZR86_RS00460: ABZR86_RS00460 - nicotinate phosphoribosyltransferase, at 88,043 to 89,236 _RS00460 ABZR86_RS00465: ABZR86_RS00465 - MetQ/NlpA family ABC transporter substrate-binding protein, at 89,454 to 90,257 _RS00465 Position (kb) 88 89 90Strain fitness (log2 ratio) -2 -1 0 1 2at 87.182 kb on + strand, within ABZR86_RS00455at 87.183 kb on - strand, within ABZR86_RS00455at 87.236 kb on + strand, within ABZR86_RS00455at 87.236 kb on + strand, within ABZR86_RS00455at 87.236 kb on + strand, within ABZR86_RS00455at 87.236 kb on + strand, within ABZR86_RS00455at 87.237 kb on - strand, within ABZR86_RS00455at 87.237 kb on - strand, within ABZR86_RS00455at 87.237 kb on - strand, within ABZR86_RS00455at 87.237 kb on - strand, within ABZR86_RS00455at 87.237 kb on - strand, within ABZR86_RS00455at 87.237 kb on - strand, within ABZR86_RS00455at 87.604 kb on + strandat 87.604 kb on + strandat 87.605 kb on - strandat 87.605 kb on - strandat 87.605 kb on - strandat 87.605 kb on - strandat 87.783 kb on + strandat 87.784 kb on - strandat 87.784 kb on - strandat 87.784 kb on - strandat 87.804 kb on - strandat 87.888 kb on + strandat 87.888 kb on + strandat 87.918 kb on + strandat 87.918 kb on + strandat 87.918 kb on + strandat 88.000 kb on - strandat 88.076 kb on + strandat 88.076 kb on + strandat 88.077 kb on - strandat 88.077 kb on - strandat 88.077 kb on - strandat 88.077 kb on - strandat 88.077 kb on - strandat 88.077 kb on - strandat 88.113 kb on - strandat 88.175 kb on + strand, within ABZR86_RS00460at 88.175 kb on + strand, within ABZR86_RS00460at 88.176 kb on - strand, within ABZR86_RS00460at 88.176 kb on - strand, within ABZR86_RS00460at 88.176 kb on - strand, within ABZR86_RS00460at 88.176 kb on - strand, within ABZR86_RS00460at 88.176 kb on - strand, within ABZR86_RS00460at 88.176 kb on - strand, within ABZR86_RS00460at 88.176 kb on - strand, within ABZR86_RS00460at 88.176 kb on - strand, within ABZR86_RS00460at 88.244 kb on + strand, within ABZR86_RS00460at 88.316 kb on + strand, within ABZR86_RS00460at 88.316 kb on + strand, within ABZR86_RS00460at 88.316 kb on + strand, within ABZR86_RS00460at 88.316 kb on + strand, within ABZR86_RS00460at 88.316 kb on + strand, within ABZR86_RS00460at 88.316 kb on + strand, within ABZR86_RS00460at 88.316 kb on + strand, within ABZR86_RS00460at 88.317 kb on - strand, within ABZR86_RS00460at 88.317 kb on - strand, within ABZR86_RS00460at 88.317 kb on - strand, within ABZR86_RS00460at 88.317 kb on - strand, within ABZR86_RS00460at 88.320 kb on + strand, within ABZR86_RS00460at 88.320 kb on + strand, within ABZR86_RS00460at 88.320 kb on + strand, within ABZR86_RS00460at 88.320 kb on + strand, within ABZR86_RS00460at 88.320 kb on + strand, within ABZR86_RS00460at 88.320 kb on + strand, within ABZR86_RS00460at 88.320 kb on + strand, within ABZR86_RS00460at 88.320 kb on + strand, within ABZR86_RS00460at 88.321 kb on - strand, within ABZR86_RS00460at 88.321 kb on - strand, within ABZR86_RS00460at 88.321 kb on - strand, within ABZR86_RS00460at 88.321 kb on - strand, within ABZR86_RS00460at 88.321 kb on - strand, within ABZR86_RS00460at 88.321 kb on - strand, within ABZR86_RS00460at 88.321 kb on - strand, within ABZR86_RS00460at 88.321 kb on - strand, within ABZR86_RS00460at 88.321 kb on - strand, within ABZR86_RS00460at 88.433 kb on + strand, within ABZR86_RS00460at 88.433 kb on + strand, within ABZR86_RS00460at 88.434 kb on - strand, within ABZR86_RS00460at 88.434 kb on - strand, within ABZR86_RS00460at 88.434 kb on - strand, within ABZR86_RS00460at 88.698 kb on - strand, within ABZR86_RS00460at 88.698 kb on - strand, within ABZR86_RS00460at 88.698 kb on - strand, within ABZR86_RS00460at 88.698 kb on - strand, within ABZR86_RS00460at 88.812 kb on - strand, within ABZR86_RS00460at 88.812 kb on - strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.847 kb on + strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 88.848 kb on - strand, within ABZR86_RS00460at 89.006 kb on + strand, within ABZR86_RS00460at 89.178 kb on - strandat 89.186 kb on + strandat 89.186 kb on + strandat 89.186 kb on + strandat 89.187 kb on - strandat 89.249 kb on - strandat 89.249 kb on - strandat 89.249 kb on - strandat 89.256 kb on + strandat 89.257 kb on - strandat 89.303 kb on + strandat 89.304 kb on - strandat 89.482 kb on + strandat 89.483 kb on - strandat 89.581 kb on + strand, within ABZR86_RS00465at 89.581 kb on + strand, within ABZR86_RS00465at 89.582 kb on - strand, within ABZR86_RS00465at 89.582 kb on - strand, within ABZR86_RS00465at 89.656 kb on + strand, within ABZR86_RS00465at 89.656 kb on + strand, within ABZR86_RS00465at 89.656 kb on + strand, within ABZR86_RS00465at 89.656 kb on + strand, within ABZR86_RS00465at 89.657 kb on - strand, within ABZR86_RS00465at 89.663 kb on + strand, within ABZR86_RS00465at 89.664 kb on - strand, within ABZR86_RS00465at 89.914 kb on + strand, within ABZR86_RS00465at 89.914 kb on + strand, within ABZR86_RS00465at 89.914 kb on + strand, within ABZR86_RS00465at 89.992 kb on + strand, within ABZR86_RS00465at 90.010 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.054 kb on + strand, within ABZR86_RS00465at 90.055 kb on - strand, within ABZR86_RS00465at 90.058 kb on + strand, within ABZR86_RS00465at 90.058 kb on + strand, within ABZR86_RS00465

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.2 mg/ml
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87,182 + ABZR86_RS00455 0.46 +1.3
87,183 - ABZR86_RS00455 0.46 +0.2
87,236 + ABZR86_RS00455 0.52 -1.4
87,236 + ABZR86_RS00455 0.52 -0.2
87,236 + ABZR86_RS00455 0.52 -0.4
87,236 + ABZR86_RS00455 0.52 -0.2
87,237 - ABZR86_RS00455 0.52 -0.8
87,237 - ABZR86_RS00455 0.52 +1.0
87,237 - ABZR86_RS00455 0.52 +1.5
87,237 - ABZR86_RS00455 0.52 +0.3
87,237 - ABZR86_RS00455 0.52 +1.0
87,237 - ABZR86_RS00455 0.52 -0.5
87,604 + +0.2
87,604 + -1.1
87,605 - -0.2
87,605 - -0.9
87,605 - +0.4
87,605 - +0.6
87,783 + +0.4
87,784 - -0.1
87,784 - -0.2
87,784 - -1.3
87,804 - -0.9
87,888 + +0.0
87,888 + +1.5
87,918 + -0.1
87,918 + -1.7
87,918 + +0.4
88,000 - +1.8
88,076 + +0.5
88,076 + +1.1
88,077 - -0.3
88,077 - +0.3
88,077 - +0.5
88,077 - -0.3
88,077 - +0.3
88,077 - +0.3
88,113 - -0.2
88,175 + ABZR86_RS00460 0.11 -0.4
88,175 + ABZR86_RS00460 0.11 -0.3
88,176 - ABZR86_RS00460 0.11 +1.3
88,176 - ABZR86_RS00460 0.11 -0.3
88,176 - ABZR86_RS00460 0.11 -2.0
88,176 - ABZR86_RS00460 0.11 -0.8
88,176 - ABZR86_RS00460 0.11 +0.2
88,176 - ABZR86_RS00460 0.11 -1.4
88,176 - ABZR86_RS00460 0.11 -0.7
88,176 - ABZR86_RS00460 0.11 -0.1
88,244 + ABZR86_RS00460 0.17 -0.6
88,316 + ABZR86_RS00460 0.23 -0.5
88,316 + ABZR86_RS00460 0.23 -0.3
88,316 + ABZR86_RS00460 0.23 +0.2
88,316 + ABZR86_RS00460 0.23 -0.0
88,316 + ABZR86_RS00460 0.23 +0.5
88,316 + ABZR86_RS00460 0.23 -1.0
88,316 + ABZR86_RS00460 0.23 -0.2
88,317 - ABZR86_RS00460 0.23 +0.2
88,317 - ABZR86_RS00460 0.23 -0.1
88,317 - ABZR86_RS00460 0.23 -0.7
88,317 - ABZR86_RS00460 0.23 +1.1
88,320 + ABZR86_RS00460 0.23 -0.3
88,320 + ABZR86_RS00460 0.23 -1.0
88,320 + ABZR86_RS00460 0.23 -1.5
88,320 + ABZR86_RS00460 0.23 -0.3
88,320 + ABZR86_RS00460 0.23 +0.0
88,320 + ABZR86_RS00460 0.23 +0.2
88,320 + ABZR86_RS00460 0.23 -0.1
88,320 + ABZR86_RS00460 0.23 -0.2
88,321 - ABZR86_RS00460 0.23 -0.7
88,321 - ABZR86_RS00460 0.23 +0.8
88,321 - ABZR86_RS00460 0.23 +0.5
88,321 - ABZR86_RS00460 0.23 +1.3
88,321 - ABZR86_RS00460 0.23 -1.2
88,321 - ABZR86_RS00460 0.23 +1.7
88,321 - ABZR86_RS00460 0.23 -1.0
88,321 - ABZR86_RS00460 0.23 -0.5
88,321 - ABZR86_RS00460 0.23 +0.1
88,433 + ABZR86_RS00460 0.33 +0.4
88,433 + ABZR86_RS00460 0.33 -0.7
88,434 - ABZR86_RS00460 0.33 +0.6
88,434 - ABZR86_RS00460 0.33 +0.2
88,434 - ABZR86_RS00460 0.33 +0.5
88,698 - ABZR86_RS00460 0.55 -0.2
88,698 - ABZR86_RS00460 0.55 -0.2
88,698 - ABZR86_RS00460 0.55 -0.0
88,698 - ABZR86_RS00460 0.55 +0.1
88,812 - ABZR86_RS00460 0.64 +0.3
88,812 - ABZR86_RS00460 0.64 -0.1
88,847 + ABZR86_RS00460 0.67 +0.6
88,847 + ABZR86_RS00460 0.67 -0.0
88,847 + ABZR86_RS00460 0.67 -0.2
88,847 + ABZR86_RS00460 0.67 +0.1
88,847 + ABZR86_RS00460 0.67 -0.4
88,847 + ABZR86_RS00460 0.67 +0.3
88,847 + ABZR86_RS00460 0.67 -0.1
88,847 + ABZR86_RS00460 0.67 +1.3
88,848 - ABZR86_RS00460 0.67 -0.6
88,848 - ABZR86_RS00460 0.67 -0.2
88,848 - ABZR86_RS00460 0.67 -0.1
88,848 - ABZR86_RS00460 0.67 -0.7
88,848 - ABZR86_RS00460 0.67 +0.3
88,848 - ABZR86_RS00460 0.67 -0.2
88,848 - ABZR86_RS00460 0.67 -2.3
88,848 - ABZR86_RS00460 0.67 +0.5
88,848 - ABZR86_RS00460 0.67 +0.4
88,848 - ABZR86_RS00460 0.67 -0.2
89,006 + ABZR86_RS00460 0.81 -0.5
89,178 - -0.2
89,186 + +0.0
89,186 + +0.6
89,186 + +0.4
89,187 - +0.4
89,249 - -0.2
89,249 - -0.3
89,249 - +0.5
89,256 + +0.3
89,257 - -0.4
89,303 + +0.3
89,304 - -2.0
89,482 + -2.0
89,483 - -0.4
89,581 + ABZR86_RS00465 0.16 -1.3
89,581 + ABZR86_RS00465 0.16 -0.2
89,582 - ABZR86_RS00465 0.16 +0.6
89,582 - ABZR86_RS00465 0.16 +0.3
89,656 + ABZR86_RS00465 0.25 +0.5
89,656 + ABZR86_RS00465 0.25 +0.5
89,656 + ABZR86_RS00465 0.25 -0.6
89,656 + ABZR86_RS00465 0.25 +0.1
89,657 - ABZR86_RS00465 0.25 +0.1
89,663 + ABZR86_RS00465 0.26 +0.3
89,664 - ABZR86_RS00465 0.26 +0.8
89,914 + ABZR86_RS00465 0.57 +0.8
89,914 + ABZR86_RS00465 0.57 +0.4
89,914 + ABZR86_RS00465 0.57 -1.0
89,992 + ABZR86_RS00465 0.67 +0.2
90,010 + ABZR86_RS00465 0.69 +0.0
90,054 + ABZR86_RS00465 0.75 -0.1
90,054 + ABZR86_RS00465 0.75 +0.9
90,054 + ABZR86_RS00465 0.75 -0.6
90,054 + ABZR86_RS00465 0.75 +1.0
90,054 + ABZR86_RS00465 0.75 +0.7
90,054 + ABZR86_RS00465 0.75 +0.4
90,054 + ABZR86_RS00465 0.75 -0.9
90,055 - ABZR86_RS00465 0.75 -1.0
90,058 + ABZR86_RS00465 0.75 +1.7
90,058 + ABZR86_RS00465 0.75 +2.1

Or see this region's nucleotide sequence