Experiment: BHIS with Paraquat dichloride 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4325 and BT4326 are separated by 45 nucleotides BT4326 and BT4327 are separated by 7 nucleotides
BT4325: BT4325 - hypothetical protein (NCBI ptt file), at 5,697,911 to 5,699,116
BT4325
BT4326: BT4326 - ABC transporter ATP-binding protein (NCBI ptt file), at 5,699,162 to 5,699,815
BT4326
BT4327: BT4327 - hypothetical protein (NCBI ptt file), at 5,699,823 to 5,701,370
BT4327
Position (kb) 5699
5700 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5698.245 kb on + strand, within BT4325 at 5698.292 kb on + strand, within BT4325 at 5698.311 kb on + strand, within BT4325 at 5698.312 kb on - strand, within BT4325 at 5698.495 kb on + strand, within BT4325 at 5698.533 kb on + strand, within BT4325 at 5698.640 kb on - strand, within BT4325 at 5698.681 kb on + strand, within BT4325 at 5698.682 kb on - strand, within BT4325 at 5698.961 kb on - strand, within BT4325 at 5699.160 kb on + strand at 5699.161 kb on - strand at 5699.161 kb on - strand at 5699.197 kb on + strand at 5699.584 kb on - strand, within BT4326 at 5699.593 kb on + strand, within BT4326 at 5699.643 kb on + strand, within BT4326 at 5699.736 kb on - strand, within BT4326 at 5699.736 kb on - strand, within BT4326 at 5699.736 kb on - strand, within BT4326 at 5699.825 kb on - strand at 5699.825 kb on - strand at 5699.839 kb on - strand at 5699.934 kb on + strand at 5699.938 kb on + strand at 5699.939 kb on - strand at 5700.015 kb on + strand, within BT4327 at 5700.048 kb on - strand, within BT4327 at 5700.152 kb on - strand, within BT4327 at 5700.152 kb on - strand, within BT4327 at 5700.152 kb on - strand, within BT4327 at 5700.152 kb on - strand, within BT4327 at 5700.203 kb on - strand, within BT4327 at 5700.203 kb on - strand, within BT4327 at 5700.444 kb on - strand, within BT4327 at 5700.521 kb on - strand, within BT4327 at 5700.602 kb on - strand, within BT4327 at 5700.712 kb on + strand, within BT4327 at 5700.713 kb on - strand, within BT4327
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS with Paraquat dichloride 0.1 mg/ml remove 5,698,245 + BT4325 0.28 +1.1 5,698,292 + BT4325 0.32 +0.3 5,698,311 + BT4325 0.33 -1.5 5,698,312 - BT4325 0.33 +0.3 5,698,495 + BT4325 0.48 -0.4 5,698,533 + BT4325 0.52 -3.0 5,698,640 - BT4325 0.60 +0.5 5,698,681 + BT4325 0.64 -0.5 5,698,682 - BT4325 0.64 +1.0 5,698,961 - BT4325 0.87 +0.5 5,699,160 + -0.0 5,699,161 - -0.5 5,699,161 - -0.2 5,699,197 + -4.0 5,699,584 - BT4326 0.65 -2.3 5,699,593 + BT4326 0.66 -1.5 5,699,643 + BT4326 0.74 -2.6 5,699,736 - BT4326 0.88 -0.5 5,699,736 - BT4326 0.88 -2.6 5,699,736 - BT4326 0.88 +0.2 5,699,825 - +1.4 5,699,825 - +1.0 5,699,839 - +0.5 5,699,934 + -1.0 5,699,938 + +0.7 5,699,939 - -2.3 5,700,015 + BT4327 0.12 -1.2 5,700,048 - BT4327 0.15 -0.1 5,700,152 - BT4327 0.21 -2.0 5,700,152 - BT4327 0.21 -1.3 5,700,152 - BT4327 0.21 -1.0 5,700,152 - BT4327 0.21 -0.5 5,700,203 - BT4327 0.25 +0.3 5,700,203 - BT4327 0.25 +0.8 5,700,444 - BT4327 0.40 +0.3 5,700,521 - BT4327 0.45 +0.4 5,700,602 - BT4327 0.50 +1.3 5,700,712 + BT4327 0.57 +0.1 5,700,713 - BT4327 0.57 -1.4
Or see this region's nucleotide sequence