Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4160

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
5,465,361	+		BT4159	0.43	-0.7
5,465,369	-		BT4159	0.43	-1.9
5,465,401	-		BT4159	0.45	+0.7
5,465,410	+		BT4159	0.46	-1.2
5,465,462	-		BT4159	0.49	-1.9
5,465,546	-		BT4159	0.54	-2.2
5,465,632	-		BT4159	0.60	-3.7
5,465,638	-		BT4159	0.60	+0.2
5,465,657	+		BT4159	0.61	-3.8
5,465,657	+		BT4159	0.61	+0.7
5,465,679	+		BT4159	0.62	+0.9
5,465,721	-		BT4159	0.65	-2.8
5,465,814	+		BT4159	0.71	-2.6
5,466,093	-		BT4159	0.88	-0.3
5,466,093	-		BT4159	0.88	+1.3
5,466,098	-		BT4159	0.88	-3.0
5,466,098	-		BT4159	0.88	-2.9
5,466,141	-				-1.4
5,466,215	-				-0.3
5,466,282	-				+0.4
5,466,469	+				-0.6
5,466,571	+		BT4160	0.12	-1.1
5,466,571	+		BT4160	0.12	-2.6
5,466,572	-		BT4160	0.12	-1.1
5,466,575	+		BT4160	0.12	+0.3
5,466,575	+		BT4160	0.12	+1.0
5,466,578	-		BT4160	0.12	-2.2
5,466,635	-		BT4160	0.15	-0.1
5,466,744	+		BT4160	0.20	-2.7
5,466,770	-		BT4160	0.21	-0.8
5,466,770	-		BT4160	0.21	-0.0
5,466,773	+		BT4160	0.22	-0.3
5,466,773	+		BT4160	0.22	+0.4
5,466,775	+		BT4160	0.22	-1.6
5,466,780	+		BT4160	0.22	+0.8
5,466,780	+		BT4160	0.22	-0.3
5,466,824	+		BT4160	0.24	-2.1
5,466,832	+		BT4160	0.24	+1.5
5,466,833	-		BT4160	0.24	-0.3
5,467,097	+		BT4160	0.37	-2.2
5,467,109	+		BT4160	0.38	-2.0
5,467,115	-		BT4160	0.38	-3.5
5,467,130	-		BT4160	0.39	-1.3
5,467,130	-		BT4160	0.39	-0.6
5,467,130	-				-0.3
5,467,136	-		BT4160	0.39	-4.4
5,467,162	+		BT4160	0.40	-1.1
5,467,212	-		BT4160	0.43	-1.6
5,467,212	-		BT4160	0.43	-1.6
5,467,292	-		BT4160	0.46	+0.5
5,467,306	-		BT4160	0.47	-2.5
5,467,343	+		BT4160	0.49	-2.0
5,467,345	+		BT4160	0.49	-0.3
5,467,345	+		BT4160	0.49	+0.8
5,467,346	-		BT4160	0.49	-2.4
5,467,370	+		BT4160	0.50	-0.3
5,467,371	-		BT4160	0.50	+1.4
5,467,438	+		BT4160	0.53	-2.8
5,467,483	-		BT4160	0.55	-0.5
5,467,583	+		BT4160	0.60	-2.0
5,467,583	+		BT4160	0.60	-1.2
5,467,610	+		BT4160	0.62	+0.4
5,467,620	-		BT4160	0.62	-0.9
5,467,620	-		BT4160	0.62	+0.3
5,467,739	+		BT4160	0.68	-0.7
5,467,740	-		BT4160	0.68	+0.3
5,467,794	-		BT4160	0.70	-0.8
5,467,794	-		BT4160	0.70	-4.7
5,467,795	+		BT4160	0.70	-0.2
5,467,795	+		BT4160	0.70	-1.0
5,467,796	-		BT4160	0.70	-1.1
5,467,807	+		BT4160	0.71	-1.3
5,467,877	-		BT4160	0.74	-2.0
5,467,877	-		BT4160	0.74	-0.2
5,467,877	-		BT4160	0.74	-0.9
5,467,899	-		BT4160	0.75	-1.0
5,467,922	+		BT4160	0.76	-0.5
5,467,922	+		BT4160	0.76	+0.7
5,467,924	+		BT4160	0.76	-1.8
5,467,954	-		BT4160	0.78	-1.3
5,468,095	+		BT4160	0.85	-0.3
5,468,095	+		BT4160	0.85	-0.2
5,468,095	+		BT4160	0.85	-2.2
5,468,096	-		BT4160	0.85	-3.1
5,468,104	+		BT4160	0.85	-1.5
5,468,174	+		BT4160	0.88	-0.5
5,468,200	+		BT4160	0.90	+0.7
5,468,201	-		BT4160	0.90	-0.9
5,468,274	+				-2.1
5,468,349	-				-0.9
5,468,350	+				-0.3
5,468,350	+				-1.5
5,468,402	-				+0.7
5,468,475	+				+0.7
5,468,500	-				+0.2
5,468,504	+				+1.1
5,468,519	+				-1.5
5,468,532	-				-0.9
5,468,532	-				+0.7
5,468,573	+				-3.3
5,468,625	+		BT4161	0.12	-2.5
5,468,654	+		BT4161	0.16	-1.4
5,468,827	+		BT4161	0.45	-1.3
5,469,036	-		BT4161	0.80	-2.6
5,469,144	+				-0.9
5,469,157	+				+0.7
5,469,185	-				-2.4
5,469,216	+				+0.7
5,469,220	-				-2.5
5,469,220	-				+0.6
5,469,228	+				-3.0
5,469,231	+				-3.3
5,469,238	-				-2.9
5,469,260	-				+0.8
5,469,265	-				-1.9
5,469,314	-				+0.7
5,469,339	+				+0.7
5,469,393	-				-2.2
5,469,397	+				+0.6