Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3985

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
5,189,718	-		BT3984	0.43	-0.2
5,189,838	+		BT3984	0.50	+1.9
5,189,838	+		BT3984	0.50	-0.2
5,189,838	+		BT3984	0.50	+0.8
5,189,838	+		BT3984	0.50	-0.5
5,189,864	-		BT3984	0.52	-2.2
5,189,940	-		BT3984	0.57	-0.8
5,190,006	+		BT3984	0.61	-0.8
5,190,006	+		BT3984	0.61	-0.8
5,190,007	-		BT3984	0.61	+0.3
5,190,027	-		BT3984	0.62	-1.2
5,190,059	+		BT3984	0.64	-1.4
5,190,060	-		BT3984	0.64	-1.8
5,190,063	+		BT3984	0.64	-1.6
5,190,063	+		BT3984	0.64	+0.3
5,190,087	-		BT3984	0.66	+1.0
5,190,087	-		BT3984	0.66	+0.2
5,190,131	-		BT3984	0.68	-1.2
5,190,131	-		BT3984	0.68	-1.8
5,190,131	-		BT3984	0.68	+0.8
5,190,192	-		BT3984	0.72	-2.2
5,190,280	-		BT3984	0.78	-0.8
5,190,280	-		BT3984	0.78	-1.3
5,190,281	+		BT3984	0.78	+1.4
5,190,282	-		BT3984	0.78	-0.6
5,190,282	-		BT3984	0.78	+0.3
5,190,332	+		BT3984	0.81	+1.1
5,190,348	-		BT3984	0.82	-2.2
5,190,565	+				-3.8
5,190,603	-				+0.6
5,190,640	-				-2.7
5,190,646	-				+0.5
5,190,666	-				-2.2
5,190,685	-				-0.8
5,190,737	+				-2.0
5,190,807	+		BT3985	0.13	-1.5
5,190,807	+		BT3985	0.13	-2.1
5,190,808	-		BT3985	0.13	-0.8
5,190,839	+		BT3985	0.16	-1.3
5,190,839	+		BT3985	0.16	-2.4
5,190,840	-		BT3985	0.16	-1.7
5,190,840	-		BT3985	0.16	+0.7
5,190,840	-		BT3985	0.16	+0.4
5,190,884	+		BT3985	0.20	+0.2
5,190,885	-		BT3985	0.20	-3.0
5,191,032	-		BT3985	0.34	-1.3
5,191,032	-		BT3985	0.34	-1.7
5,191,113	+		BT3985	0.42	-2.1
5,191,234	-		BT3985	0.53	+0.5
5,191,331	-		BT3985	0.62	-1.8
5,191,447	+		BT3985	0.73	+2.4
5,191,448	-		BT3985	0.73	-0.3
5,191,541	+		BT3985	0.81	+0.5
5,191,588	+		BT3985	0.86	-3.4
5,191,589	-		BT3985	0.86	-1.6
5,191,634	+		BT3985	0.90	+1.0
5,191,638	+				-2.2
5,191,658	+				+0.4
5,191,662	-				+0.7
5,191,691	+				-1.5
5,191,695	+				-2.8
5,191,696	-				-0.8
5,191,696	-				+0.7
5,191,722	-				-1.6
5,191,725	-				-1.1
5,191,737	-				-1.6
5,191,740	+				+1.1
5,191,761	-				+1.3
5,191,762	+				-2.1
5,191,766	+				+0.9
5,191,814	-				-2.2
5,191,844	+				+2.0
5,191,844	+				-3.1
5,191,844	+				-1.1
5,191,852	+				+1.2
5,191,859	+				-0.1
5,191,859	+				+1.3
5,191,859	+				-0.2
5,191,860	-				-1.8
5,191,906	+		BT3986	0.13	-2.2
5,191,908	+		BT3986	0.14	-2.2
5,191,934	+		BT3986	0.16	-3.3
5,191,940	-		BT3986	0.16	+1.0
5,191,940	-		BT3986	0.16	+0.1
5,192,006	+		BT3986	0.22	-2.1
5,192,006	+		BT3986	0.22	-1.6
5,192,095	+		BT3986	0.30	-0.8
5,192,096	-		BT3986	0.30	-1.1
5,192,163	+		BT3986	0.36	-2.0
5,192,164	-		BT3986	0.36	+1.0
5,192,203	-		BT3986	0.39	-1.5
5,192,226	-		BT3986	0.41	-3.0
5,192,233	-		BT3986	0.42	+0.4
5,192,251	+		BT3986	0.43	+0.9
5,192,255	-		BT3986	0.44	+0.3
5,192,255	-		BT3986	0.44	-2.7
5,192,315	-		BT3986	0.49	-1.1
5,192,463	+		BT3986	0.62	-1.2
5,192,464	-		BT3986	0.62	+0.2
5,192,512	-		BT3986	0.66	-1.1
5,192,552	-		BT3986	0.69	-2.8
5,192,552	-		BT3986	0.69	-1.6
5,192,578	+		BT3986	0.72	+1.1
5,192,597	+		BT3986	0.73	-0.2
5,192,600	-		BT3986	0.74	+2.2
5,192,620	+		BT3986	0.75	+1.2
5,192,621	-		BT3986	0.75	-1.8
5,192,645	+		BT3986	0.77	-1.0
5,192,647	+		BT3986	0.78	-2.7