Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3625

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
4,696,962	+		BT3624	0.47	+0.1
4,696,962	+		BT3624	0.47	-0.5
4,696,990	+		BT3624	0.49	+2.1
4,696,990	+		BT3624	0.49	-2.9
4,696,990	+		BT3624	0.49	-2.2
4,696,990	+		BT3624	0.49	-1.6
4,696,991	-		BT3624	0.49	-1.1
4,696,991	-		BT3624	0.49	-2.0
4,696,991	-		BT3624	0.49	-1.7
4,696,991	-		BT3624	0.49	+0.5
4,696,991	-		BT3624	0.49	-2.0
4,696,993	-		BT3624	0.49	-1.5
4,697,028	+		BT3624	0.52	-2.0
4,697,042	-		BT3624	0.53	-2.6
4,697,097	+		BT3624	0.57	-2.5
4,697,097	+		BT3624	0.57	-0.5
4,697,254	+		BT3624	0.70	-2.3
4,697,255	-		BT3624	0.70	-1.1
4,697,255	-		BT3624	0.70	-1.2
4,697,286	-				+2.0
4,697,364	+		BT3624	0.78	+1.1
4,697,428	-		BT3624	0.83	-0.6
4,697,430	-		BT3624	0.84	+0.8
4,697,430	-		BT3624	0.84	-1.2
4,697,430	-		BT3624	0.84	-3.6
4,697,430	-		BT3624	0.84	-1.3
4,697,467	+		BT3624	0.86	-1.5
4,697,467	+		BT3624	0.86	-2.2
4,697,484	+		BT3624	0.88	+0.0
4,697,586	-				-1.5
4,697,588	-				+0.4
4,697,588	-				+1.1
4,697,588	-				+0.4
4,697,595	+				-3.1
4,697,612	+				-0.1
4,697,646	-				+0.4
4,697,650	+				-0.1
4,697,659	+				-1.5
4,697,660	-				-1.6
4,697,730	-				-2.2
4,697,765	-				+1.4
4,697,820	+				+0.6
4,697,843	-				-2.0
4,697,862	+				-1.5
4,697,880	+				+0.0
4,697,895	+				-3.6
4,697,896	-				-1.2
4,697,926	+				-1.0
4,697,927	-				-0.2
4,697,928	+				-1.3
4,697,929	-				-3.2
4,697,954	-				-1.8
4,697,955	+				+1.3
4,697,955	+				-1.0
4,697,955	+				-1.2
4,697,956	-				-2.5
4,697,956	-				+0.0
4,697,988	-				-3.2
4,698,018	+		BT3625	0.12	-2.5
4,698,021	+		BT3625	0.12	-2.2
4,698,022	-		BT3625	0.12	+1.8
4,698,022	-		BT3625	0.12	-3.5
4,698,026	-		BT3625	0.13	+0.0
4,698,067	+		BT3625	0.17	+1.0
4,698,135	+		BT3625	0.23	-0.6
4,698,135	+		BT3625	0.23	-1.4
4,698,135	+		BT3625	0.23	-2.6
4,698,135	+		BT3625	0.23	-2.8
4,698,135	+		BT3625	0.23	-2.8
4,698,136	-		BT3625	0.23	+1.0
4,698,136	-		BT3625	0.23	-1.1
4,698,136	-		BT3625	0.23	+0.4
4,698,156	+		BT3625	0.25	-0.6
4,698,156	+		BT3625	0.25	+0.9
4,698,157	-		BT3625	0.25	+0.9
4,698,157	-		BT3625	0.25	+0.8
4,698,231	-		BT3625	0.33	+0.1
4,698,256	+		BT3625	0.35	-2.5
4,698,268	-		BT3625	0.36	-2.8
4,698,406	+		BT3625	0.49	+1.7
4,698,406	+		BT3625	0.49	-2.7
4,698,406	+		BT3625	0.49	-0.9
4,698,407	-		BT3625	0.50	-1.8
4,698,519	-		BT3625	0.60	-1.3
4,698,635	+		BT3625	0.72	-2.6
4,698,687	+		BT3625	0.77	-2.0
4,698,688	-		BT3625	0.77	-2.5
4,698,695	-		BT3625	0.77	+0.9
4,698,703	+		BT3625	0.78	-0.4
4,698,703	+		BT3625	0.78	+0.1
4,698,752	+		BT3625	0.83	-1.0
4,698,809	-		BT3625	0.88	-1.6
4,698,810	+		BT3625	0.89	+0.3
4,698,811	-		BT3625	0.89	-2.3
4,698,900	+				+1.8
4,698,902	+				-1.5
4,698,902	+				-0.7
4,698,903	-				-2.6
4,698,903	-				+0.0
4,698,903	-				-1.2
4,698,905	+				-3.2
4,698,974	-				+1.0
4,699,121	+		BT3626	0.22	-0.8
4,699,335	-		BT3626	0.54	-4.4
4,699,474	-		BT3626	0.75	+0.7
4,699,527	+		BT3626	0.83	-0.6
4,699,527	+		BT3626	0.83	-2.3
4,699,528	-		BT3626	0.83	-0.6
4,699,528	-		BT3626	0.83	+0.4
4,699,550	+		BT3626	0.86	-1.7
4,699,550	+		BT3626	0.86	-1.0
4,699,556	-		BT3626	0.87	+0.0
4,699,629	+				-1.6
4,699,678	-				-1.4
4,699,688	+				-2.0
4,699,844	+		BT3627	0.18	+0.7
4,699,844	+		BT3627	0.18	-1.0
4,699,887	+		BT3627	0.23	-1.8
4,699,888	-		BT3627	0.23	-0.3
4,699,893	+		BT3627	0.24	-0.1