Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3274

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
4,181,487	-		BT3272	0.86	+0.2
4,181,515	-		BT3272	0.88	-1.4
4,181,517	+		BT3272	0.88	+2.5
4,181,530	-		BT3272	0.89	+1.2
4,181,562	-				+0.4
4,181,623	-				-1.6
4,181,687	-				+0.2
4,181,697	-				+0.8
4,181,732	-				+0.1
4,181,744	-				+1.2
4,181,803	-		BT3273	0.12	+0.2
4,181,803	-		BT3273	0.12	-2.1
4,181,852	-		BT3273	0.19	-0.4
4,181,865	+		BT3273	0.21	+2.4
4,181,865	+		BT3273	0.21	+0.2
4,181,866	-		BT3273	0.21	-1.5
4,181,866	-		BT3273	0.21	-3.0
4,181,871	-		BT3273	0.22	-1.6
4,181,874	-		BT3273	0.22	+1.0
4,181,876	+		BT3273	0.23	+0.0
4,181,882	+		BT3273	0.23	-2.8
4,181,948	-		BT3273	0.33	+0.2
4,181,979	-		BT3273	0.37	+0.2
4,182,047	+		BT3273	0.47	+0.2
4,182,048	-		BT3273	0.47	-1.9
4,182,048	-		BT3273	0.47	-2.8
4,182,048	-		BT3273	0.47	-1.2
4,182,168	-		BT3273	0.64	+1.3
4,182,189	-		BT3273	0.67	-0.6
4,182,191	+		BT3273	0.67	-2.6
4,182,202	+		BT3273	0.68	+0.6
4,182,231	+		BT3273	0.73	+1.8
4,182,240	-		BT3273	0.74	+1.2
4,182,243	+		BT3273	0.74	+0.0
4,182,243	+		BT3273	0.74	-2.0
4,182,244	-		BT3273	0.74	-2.1
4,182,346	-		BT3273	0.89	-3.6
4,182,348	+		BT3273	0.89	-2.5
4,182,349	-		BT3273	0.89	-1.4
4,182,349	-		BT3273	0.89	+0.6
4,182,349	-		BT3273	0.89	-0.6
4,182,412	+				+1.4
4,182,412	+				-2.7
4,182,417	-				+0.9
4,182,417	-				-2.8
4,182,424	-				+0.6
4,182,433	-				-0.2
4,182,470	+				+0.4
4,182,518	-				-2.7
4,182,523	+				+1.2
4,182,574	+				-0.9
4,182,588	+				-2.2
4,182,588	+				-2.0
4,182,644	+		BT3274	0.11	-1.7
4,182,688	-		BT3274	0.13	+0.8
4,182,712	-		BT3274	0.15	-1.4
4,182,720	+		BT3274	0.15	-0.6
4,182,746	+		BT3274	0.17	-2.3
4,182,756	+		BT3274	0.18	-2.0
4,182,769	-		BT3274	0.19	-1.7
4,182,769	-		BT3274	0.19	-1.3
4,182,809	-		BT3274	0.21	-1.4
4,182,809	-		BT3274	0.21	-2.1
4,182,827	+		BT3274	0.22	-0.4
4,182,854	+		BT3274	0.24	-2.2
4,182,855	+		BT3274	0.24	-1.4
4,182,855	+		BT3274	0.24	-1.1
4,182,896	+		BT3274	0.26	+0.3
4,182,896	+		BT3274	0.26	-1.1
4,182,918	+		BT3274	0.28	+1.1
4,182,919	-		BT3274	0.28	-1.2
4,182,923	-		BT3274	0.28	+1.9
4,182,942	-		BT3274	0.29	-1.1
4,182,942	-		BT3274	0.29	-1.9
4,182,942	-		BT3274	0.29	-0.1
4,182,966	+		BT3274	0.31	+1.1
4,183,020	-		BT3274	0.34	+0.8
4,183,072	+		BT3274	0.37	-2.0
4,183,075	-		BT3274	0.38	-2.6
4,183,110	+		BT3274	0.40	+1.7
4,183,147	-		BT3274	0.42	-2.4
4,183,213	-				-1.1
4,183,228	-		BT3274	0.47	-1.9
4,183,228	-		BT3274	0.47	+0.7
4,183,293	+		BT3274	0.51	-2.3
4,183,306	+		BT3274	0.52	-4.0
4,183,307	-		BT3274	0.52	-0.8
4,183,348	-		BT3274	0.55	-0.4
4,183,348	-		BT3274	0.55	-2.7
4,183,399	+		BT3274	0.58	-1.6
4,183,399	+		BT3274	0.58	-1.1
4,183,399	+		BT3274	0.58	+0.2
4,183,400	-		BT3274	0.58	+0.7
4,183,401	+		BT3274	0.58	-2.6
4,183,402	-		BT3274	0.58	-2.0
4,183,402	-		BT3274	0.58	-1.8
4,183,402	-		BT3274	0.58	-1.7
4,183,402	-		BT3274	0.58	-2.1
4,183,418	+		BT3274	0.59	-2.6
4,183,447	+		BT3274	0.61	-2.1
4,183,448	-		BT3274	0.61	-1.4
4,183,539	+				+1.2
4,183,539	+		BT3274	0.66	-2.4
4,183,539	+		BT3274	0.66	-2.8
4,183,546	-		BT3274	0.67	-0.0
4,183,574	-		BT3274	0.69	+0.0
4,183,612	-		BT3274	0.71	-2.2
4,183,676	+		BT3274	0.75	-1.5
4,183,726	-		BT3274	0.78	-1.2
4,183,726	-		BT3274	0.78	-0.9
4,183,726	-		BT3274	0.78	+2.8
4,183,749	+		BT3274	0.80	-0.4
4,183,749	+		BT3274	0.80	-0.4
4,183,750	-		BT3274	0.80	+1.7
4,183,775	-		BT3274	0.81	+0.0
4,183,794	-		BT3274	0.82	-0.3
4,183,796	-		BT3274	0.82	+0.9
4,183,797	+		BT3274	0.83	-3.3
4,183,797	+		BT3274	0.83	-1.5
4,183,798	-		BT3274	0.83	-0.8
4,183,859	-		BT3274	0.86	-2.2
4,183,864	-		BT3274	0.87	-0.2
4,183,864	-		BT3274	0.87	-2.2
4,183,957	-				-1.1
4,184,039	-				-1.3
4,184,071	-				-0.5
4,184,132	-				-3.1
4,184,202	-				-0.4
4,184,325	-				-3.7
4,184,347	+				+1.0
4,184,396	-				+1.8
4,184,451	-		BT3275	0.12	-1.1
4,184,468	-		BT3275	0.13	-0.8
4,184,564	+		BT3275	0.16	-0.1
4,184,564	+		BT3275	0.16	-4.1
4,184,564	+		BT3275	0.16	-1.1
4,184,565	-		BT3275	0.16	-1.5
4,184,568	-		BT3275	0.16	+1.2
4,184,588	-		BT3275	0.17	-0.4
4,184,605	-		BT3275	0.18	-1.0
4,184,647	-		BT3275	0.20	-0.1
4,184,678	+		BT3275	0.21	-1.0
4,184,678	+		BT3275	0.21	-1.1
4,184,746	+		BT3275	0.23	-0.4
4,184,746	+		BT3275	0.23	-0.9
4,184,794	-		BT3275	0.25	+0.4
4,184,794	-		BT3275	0.25	-2.4
4,184,894	+		BT3275	0.29	+1.2
4,184,912	-		BT3275	0.30	-1.6
4,184,997	+		BT3275	0.33	-2.0
4,185,032	+		BT3275	0.34	-1.7
4,185,042	+		BT3275	0.35	+0.7