Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2972

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
3,751,395	+		BT2971	0.87	-0.4
3,751,395	+		BT2971	0.87	+0.6
3,751,396	-		BT2971	0.87	+0.8
3,751,396	-		BT2971	0.87	-2.8
3,751,396	-		BT2971	0.87	-0.7
3,751,414	+		BT2971	0.88	-1.3
3,751,414	+		BT2971	0.88	+1.3
3,751,414	+		BT2971	0.88	-0.4
3,751,414	+		BT2971	0.88	+0.3
3,751,415	-		BT2971	0.88	+1.0
3,751,415	-		BT2971	0.88	+0.8
3,751,470	-		BT2971	0.89	+1.6
3,751,487	-		BT2971	0.90	-0.2
3,751,489	+		BT2971	0.90	+0.3
3,751,489	+		BT2971	0.90	-0.7
3,751,520	+				-1.5
3,751,521	-				-2.7
3,751,543	+				+0.5
3,751,587	-				+0.1
3,751,622	-				-0.1
3,751,637	+				-0.9
3,751,647	+				+0.1
3,751,664	+				-1.0
3,751,665	-				-1.2
3,751,667	+				+0.1
3,751,667	+				-1.6
3,751,667	+				+0.3
3,751,707	+				-1.2
3,751,707	+				-2.4
3,751,728	-				+1.3
3,751,728	-				+0.6
3,751,728	-				-1.6
3,751,742	+				-2.0
3,751,742	+				+0.5
3,751,777	+				+1.1
3,751,816	-				-3.1
3,751,842	-				-1.1
3,751,866	+				-2.0
3,751,867	-				-0.3
3,751,913	+				-0.1
3,751,913	+				-1.5
3,751,917	+				-1.5
3,751,980	+				-0.2
3,752,112	+				-0.6
3,752,113	-				-0.9
3,752,133	+				-0.9
3,752,159	-				-1.1
3,752,263	+				+2.3
3,752,279	+				-2.3
3,752,280	-				+1.3
3,752,291	+				+2.9
3,752,322	+				-1.5
3,752,344	+				+1.2
3,752,344	+				-0.6
3,752,344	+				-2.6
3,752,350	+				+1.3
3,752,351	-				-0.7
3,752,351	-				+1.1
3,752,380	+				+0.1
3,752,381	-				-3.5
3,752,384	+				+2.1
3,752,554	-		BT2972	0.29	-3.1
3,752,573	-		BT2972	0.31	+1.8
3,752,708	-		BT2972	0.49	-2.4
3,752,710	-		BT2972	0.49	-2.5
3,752,837	+		BT2972	0.66	-2.0
3,752,866	+		BT2972	0.69	-2.0
3,752,867	-		BT2972	0.69	-0.7
3,752,867	-		BT2972	0.69	-2.6
3,752,894	-		BT2972	0.73	-2.6
3,752,964	+		BT2972	0.82	+1.3
3,752,965	-		BT2972	0.82	-3.2
3,753,032	+				-0.9
3,753,032	+				-0.2
3,753,047	+				-1.0
3,753,048	-				-0.5
3,753,052	+				+1.9
3,753,065	+				-2.1
3,753,066	-				-2.3
3,753,075	-				-0.5
3,753,075	-				-2.5
3,753,079	-				+0.6
3,753,083	+				-1.1
3,753,084	-				-1.8
3,753,084	-				+2.3
3,753,087	+				-0.5
3,753,088	-				-1.0
3,753,109	-				-1.4
3,753,154	+				+1.3
3,753,157	+				+0.2
3,753,211	-				-2.7
3,753,254	+		BT2973	0.22	-0.2
3,753,255	-		BT2973	0.22	+0.1
3,753,358	+		BT2973	0.51	-3.6
3,753,358	+		BT2973	0.51	-0.9
3,753,481	-		BT2973	0.86	-0.2
3,753,526	+				+1.3
3,753,673	+		BT2974	0.59	+0.3
3,753,674	-		BT2974	0.60	+1.6
3,753,677	-		BT2974	0.61	-0.0
3,753,695	+		BT2974	0.69	-3.0
3,753,731	+		BT2974	0.86	-1.5
3,753,738	-		BT2974	0.89	-1.3
3,753,759	+				-0.9
3,753,828	+		BT2975	0.12	+1.3
3,753,828	+		BT2975	0.12	+1.3
3,753,829	-		BT2975	0.12	-3.2
3,753,829	-		BT2975	0.12	-2.3
3,753,829	-		BT2975	0.12	-0.2
3,753,829	-		BT2975	0.12	-1.8
3,753,834	+		BT2975	0.13	-2.5
3,753,835	-		BT2975	0.13	-1.9
3,753,853	+		BT2975	0.15	-1.7
3,753,861	-		BT2975	0.16	-0.2
3,753,885	-		BT2975	0.20	-3.6
3,753,910	+		BT2975	0.23	-1.0
3,753,911	-		BT2975	0.24	+0.0
3,753,911	-		BT2975	0.24	+1.3
3,753,911	-		BT2975	0.24	+0.2
3,753,940	+		BT2975	0.28	-1.8
3,753,940	+		BT2975	0.28	-2.8
3,753,955	+		BT2975	0.30	-1.6
3,754,008	+		BT2975	0.37	-0.9
3,754,042	-		BT2975	0.42	-0.7
3,754,061	+		BT2975	0.45	+0.3
3,754,062	-		BT2975	0.45	-1.8
3,754,062	-		BT2975	0.45	-1.3
3,754,084	+		BT2975	0.48	-1.0
3,754,085	-		BT2975	0.48	+1.3
3,754,086	+		BT2975	0.48	-0.7
3,754,087	-		BT2975	0.49	+1.3
3,754,088	+		BT2975	0.49	-0.2
3,754,089	-		BT2975	0.49	+0.9
3,754,089	-		BT2975	0.49	+0.3