Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2952

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
3,716,085	-		BT2951	0.37	-1.1
3,716,106	+		BT2951	0.38	-1.8
3,716,106	+		BT2951	0.38	-2.7
3,716,109	+		BT2951	0.38	-0.7
3,716,115	-		BT2951	0.39	-0.3
3,716,115	-		BT2951	0.39	-0.4
3,716,134	+		BT2951	0.40	-2.0
3,716,139	+		BT2951	0.40	+0.1
3,716,280	+		BT2951	0.49	+0.8
3,716,411	+		BT2951	0.58	-2.0
3,716,422	+		BT2951	0.58	-2.3
3,716,426	-		BT2951	0.59	-1.4
3,716,475	+		BT2951	0.62	-2.1
3,716,476	-		BT2951	0.62	+2.1
3,716,569	+		BT2951	0.68	+0.7
3,716,601	+		BT2951	0.70	+1.4
3,716,602	-		BT2951	0.70	+1.1
3,716,655	-		BT2951	0.74	-0.3
3,716,657	-		BT2951	0.74	-0.3
3,716,698	-		BT2951	0.76	+1.0
3,716,760	-		BT2951	0.80	-0.2
3,716,766	+		BT2951	0.81	+1.5
3,716,803	-		BT2951	0.83	-1.3
3,716,810	+		BT2951	0.84	+1.3
3,716,815	-		BT2951	0.84	+0.3
3,716,849	-		BT2951	0.86	+0.5
3,716,866	-		BT2951	0.87	+1.1
3,716,900	+		BT2951	0.90	+0.1
3,716,900	+		BT2951	0.90	-0.8
3,716,907	+				-1.0
3,716,908	-				+0.8
3,716,912	-				+1.7
3,716,945	+				+2.3
3,716,945	+				-0.1
3,716,966	+				-0.3
3,716,971	-				+0.9
3,716,990	+				+0.3
3,716,994	+				-1.9
3,716,995	-				+0.3
3,717,044	+				+0.3
3,717,048	+				-1.7
3,717,102	-				+1.5
3,717,173	+				+1.0
3,717,257	+				-2.4
3,717,258	-				-1.7
3,717,289	+				+1.9
3,717,395	-		BT2952	0.11	-1.3
3,717,397	+		BT2952	0.11	-0.1
3,717,496	+		BT2952	0.14	+1.9
3,717,524	-		BT2952	0.15	+1.2
3,717,544	+		BT2952	0.16	-1.1
3,717,574	-		BT2952	0.17	-1.1
3,717,616	+		BT2952	0.19	+0.8
3,717,616	+		BT2952	0.19	+3.9
3,717,616	+		BT2952	0.19	-2.0
3,717,619	+		BT2952	0.19	+0.4
3,717,623	+		BT2952	0.19	-3.1
3,717,651	-		BT2952	0.20	+0.6
3,717,651	-		BT2952	0.20	+0.5
3,717,653	-		BT2952	0.20	-0.6
3,717,653	-		BT2952	0.20	-0.8
3,717,653	-		BT2952	0.20	-0.7
3,717,656	+		BT2952	0.20	-2.0
3,717,691	+		BT2952	0.21	+0.5
3,717,692	-		BT2952	0.21	-0.9
3,717,740	+		BT2952	0.23	-1.9
3,717,798	+		BT2952	0.25	-2.7
3,717,806	-		BT2952	0.25	-1.6
3,717,842	+		BT2952	0.26	+1.0
3,717,842	+		BT2952	0.26	-0.3
3,717,846	+		BT2952	0.26	+0.3
3,717,846	+		BT2952	0.26	-2.7
3,717,854	+				+0.3
3,717,854	+		BT2952	0.27	+0.8
3,717,855	-		BT2952	0.27	+1.1
3,717,863	+		BT2952	0.27	-1.4
3,717,863	+		BT2952	0.27	+1.6
3,717,864	-		BT2952	0.27	+1.6
3,717,869	-		BT2952	0.27	+1.2
3,717,872	+		BT2952	0.27	-2.6
3,717,873	-		BT2952	0.27	+1.2
3,717,873	-		BT2952	0.27	+1.6
3,717,895	+		BT2952	0.28	-1.0
3,717,928	+		BT2952	0.29	-1.2
3,717,929	-		BT2952	0.29	-1.8
3,717,931	+		BT2952	0.29	-1.0
3,718,066	+		BT2952	0.34	+0.2
3,718,066	+		BT2952	0.34	+1.3
3,718,066	+		BT2952	0.34	-0.9
3,718,067	-		BT2952	0.34	+0.2
3,718,067	-		BT2952	0.34	+0.2
3,718,069	+		BT2952	0.34	-2.2
3,718,090	+		BT2952	0.35	-4.6
3,718,091	-		BT2952	0.35	-0.6
3,718,109	-		BT2952	0.35	-0.4
3,718,110	+		BT2952	0.35	+0.1
3,718,110	+		BT2952	0.35	+0.3
3,718,146	+		BT2952	0.36	+0.0
3,718,147	-		BT2952	0.36	-1.0
3,718,147	-		BT2952	0.36	+1.3
3,718,184	+		BT2952	0.38	+1.0
3,718,305	-		BT2952	0.42	+1.3
3,718,310	+		BT2952	0.42	+0.3
3,718,312	+		BT2952	0.42	+1.3
3,718,313	-		BT2952	0.42	-2.2
3,718,318	+		BT2952	0.42	+0.5
3,718,397	-		BT2952	0.45	+0.9
3,718,413	-		BT2952	0.45	-1.6
3,718,419	-		BT2952	0.46	-2.5
3,718,518	+		BT2952	0.49	-2.0
3,718,518	+		BT2952	0.49	+0.0
3,718,518	+		BT2952	0.49	-4.4
3,718,519	-		BT2952	0.49	+0.0
3,718,538	-		BT2952	0.50	+2.3
3,718,546	+		BT2952	0.50	-2.7
3,718,546	+		BT2952	0.50	-0.2
3,718,546	+		BT2952	0.50	-0.0
3,718,580	+		BT2952	0.51	-0.4
3,718,612	-		BT2952	0.52	-1.2
3,718,615	-		BT2952	0.52	-1.8
3,718,642	+		BT2952	0.53	+4.5
3,718,643	-		BT2952	0.53	+1.3
3,718,643	-		BT2952	0.53	-0.8
3,718,682	+		BT2952	0.54	-0.2
3,718,682	+		BT2952	0.54	+0.1
3,718,687	+		BT2952	0.55	-1.8
3,718,687	+		BT2952	0.55	-3.1
3,718,688	-		BT2952	0.55	-0.8
3,718,688	-		BT2952	0.55	-1.1
3,718,689	+		BT2952	0.55	-0.7
3,718,689	+		BT2952	0.55	-1.1
3,718,689	+		BT2952	0.55	-1.2
3,718,690	-		BT2952	0.55	+1.3
3,718,690	-		BT2952	0.55	-0.7
3,718,690	-		BT2952	0.55	-2.2
3,718,690	-		BT2952	0.55	+1.1
3,718,739	-		BT2952	0.56	+0.3
3,718,742	+		BT2952	0.56	-1.9
3,718,743	-		BT2952	0.57	-0.0
3,718,764	+		BT2952	0.57	-0.5
3,718,764	+		BT2952	0.57	-2.3
3,718,790	+		BT2952	0.58	-1.0
3,718,792	+		BT2952	0.58	-4.2
3,718,801	-		BT2952	0.58	-0.1
3,718,837	+		BT2952	0.60	-2.0
3,718,837	+		BT2952	0.60	-1.8
3,718,858	+		BT2952	0.60	-2.1
3,718,859	-		BT2952	0.60	-0.7
3,718,860	+		BT2952	0.60	-3.4
3,718,860	+		BT2952	0.60	-2.0
3,718,860	+		BT2952	0.60	+1.3
3,718,860	+		BT2952	0.60	-0.5
3,718,861	-		BT2952	0.60	-1.5
3,718,861	-		BT2952	0.60	-1.1
3,718,892	+		BT2952	0.62	-1.0
3,718,932	+		BT2952	0.63	+0.4
3,718,933	-		BT2952	0.63	-0.5
3,718,933	-		BT2952	0.63	-0.2
3,718,991	+		BT2952	0.65	-3.0
3,719,046	+		BT2952	0.67	+0.2
3,719,046	+		BT2952	0.67	+0.3
3,719,047	-		BT2952	0.67	+0.9
3,719,047	-		BT2952	0.67	+2.7
3,719,047	-		BT2952	0.67	-1.2
3,719,089	+		BT2952	0.68	+0.1
3,719,192	-		BT2952	0.72	+1.5
3,719,192	-		BT2952	0.72	-0.7
3,719,243	-		BT2952	0.73	+0.0
3,719,245	+		BT2952	0.73	-2.8
3,719,364	-		BT2952	0.77	+1.9
3,719,411	+		BT2952	0.79	-1.2
3,719,411	+		BT2952	0.79	-1.2
3,719,412	-		BT2952	0.79	-0.7
3,719,475	+				+1.3
3,719,475	+		BT2952	0.81	-0.1
3,719,475	+		BT2952	0.81	-1.9
3,719,481	+		BT2952	0.81	-2.9
3,719,516	+		BT2952	0.83	-0.5
3,719,516	+		BT2952	0.83	-1.0
3,719,601	+		BT2952	0.85	+0.8
3,719,607	-		BT2952	0.86	-0.9
3,719,642	+		BT2952	0.87	-1.8
3,719,642	+		BT2952	0.87	-2.9
3,719,642	+		BT2952	0.87	-2.6
3,719,647	+		BT2952	0.87	-2.6
3,719,725	-		BT2952	0.90	-1.9
3,719,747	+				+0.8
3,719,749	+				-1.8
3,719,749	+				+1.5
3,719,749	+				+0.6
3,719,750	-				-2.7
3,719,750	-				+1.3
3,719,750	-				-0.2
3,719,814	-				-1.6
3,719,846	+				+0.5
3,719,847	-				+2.3
3,719,847	-				+1.0
3,719,850	+				-0.7
3,719,850	+				+4.1
3,719,850	+				-1.7
3,719,851	-				+1.6
3,719,935	-				+0.3
3,719,935	-				-2.5
3,720,056	-				-0.5
3,720,076	+				+1.5
3,720,085	-				+0.2
3,720,128	+				+1.3
3,720,218	-		BT2953	0.12	-0.4
3,720,218	-		BT2953	0.12	-1.5
3,720,269	-		BT2953	0.18	+0.3
3,720,288	+		BT2953	0.19	-2.1
3,720,295	+		BT2953	0.20	+1.3
3,720,306	+		BT2953	0.21	+0.2
3,720,315	-		BT2953	0.22	-0.6
3,720,335	+		BT2953	0.24	-2.3
3,720,354	-		BT2953	0.26	-3.4
3,720,400	+		BT2953	0.31	-1.7
3,720,418	+		BT2953	0.32	+2.0
3,720,446	+		BT2953	0.35	-2.8
3,720,470	-		BT2953	0.38	-2.1
3,720,538	+		BT2953	0.44	-1.5
3,720,539	-		BT2953	0.44	-0.1
3,720,539	-		BT2953	0.44	-1.7
3,720,572	+		BT2953	0.48	-1.4
3,720,631	+		BT2953	0.53	-2.2
3,720,632	-		BT2953	0.54	-2.1
3,720,651	-		BT2953	0.55	+0.5
3,720,712	+		BT2953	0.62	-1.1
3,720,772	+		BT2953	0.67	+0.0
3,720,787	+		BT2953	0.69	-2.0
3,720,836	+		BT2953	0.74	+0.4
3,720,836	+		BT2953	0.74	-0.6
3,720,839	+		BT2953	0.74	+0.2
3,720,839	+		BT2953	0.74	-2.8
3,720,906	+		BT2953	0.81	+1.3
3,720,906	+		BT2953	0.81	-3.2
3,720,908	+		BT2953	0.81	-0.5
3,720,908	+		BT2953	0.81	-0.7
3,720,908	+		BT2953	0.81	-1.0
3,720,908	+		BT2953	0.81	+2.4
3,720,909	-		BT2953	0.81	-0.7
3,720,909	-		BT2953	0.81	+0.7
3,720,909	-		BT2953	0.81	+2.1
3,720,909	-		BT2953	0.81	-2.3
3,720,909	-		BT2953	0.81	-1.0
3,720,928	+		BT2953	0.83	-2.3
3,720,928	+		BT2953	0.83	-0.2
3,720,934	+		BT2953	0.84	-0.6