Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0626

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0625 and BT0626 are separated by 322 nucleotidesBT0626 and BT0627 are separated by 35 nucleotidesBT0627 and BT0628 are separated by 7 nucleotides BT0625: BT0625 - DNA helicase (NCBI ptt file), at 769,887 to 771,440 BT0625 BT0626: BT0626 - phenylalanyl-tRNA synthetase beta chain (NCBI ptt file), at 771,763 to 774,225 BT0626 BT0627: BT0627 - conserved hypothetical protein, with a conserved domain of unknown function (NCBI ptt file), at 774,261 to 775,004 BT0627 BT0628: BT0628 - conserved hypothetical protein (NCBI ptt file), at 775,012 to 775,257 BT0628 Position (kb) 771 772 773 774 775Strain fitness (log2 ratio) -3 -2 -1 0 1at 771.533 kb on + strandat 771.565 kb on + strandat 771.565 kb on + strandat 771.565 kb on + strandat 771.565 kb on + strandat 771.566 kb on - strandat 771.642 kb on + strandat 771.643 kb on - strandat 774.223 kb on + strandat 775.018 kb on + strandat 775.027 kb on - strandat 775.110 kb on + strand, within BT0628at 775.110 kb on + strand, within BT0628

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Paraquat dichloride 0.1 mg/ml
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771,533 + -1.8
771,565 + -2.8
771,565 + -1.0
771,565 + -0.9
771,565 + -3.0
771,566 - -0.7
771,642 + -0.4
771,643 - +0.6
774,223 + -1.4
775,018 + +0.5
775,027 - +0.8
775,110 + BT0628 0.40 -0.8
775,110 + BT0628 0.40 -2.4

Or see this region's nucleotide sequence