Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0296

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT0295 and BT0296 are separated by 15 nucleotidesBT0296 and BT0297 are separated by 20 nucleotides BT0295: BT0295 - ABC transporter ATP-binding protein (NCBI ptt file), at 344,839 to 345,732 BT0295 BT0296: BT0296 - putative xanthan lyase XalB precursor (NCBI ptt file), at 345,748 to 349,053 BT0296 BT0297: BT0297 - putative outer membrane lipoprotein silC precursor (NCBI ptt file), at 349,074 to 350,570 BT0297 Position (kb) 345 346 347 348 349 350Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 344.749 kb on - strandat 344.799 kb on - strandat 344.863 kb on - strandat 344.863 kb on - strandat 344.940 kb on - strand, within BT0295at 344.970 kb on - strand, within BT0295at 345.229 kb on + strand, within BT0295at 345.230 kb on - strand, within BT0295at 345.230 kb on - strand, within BT0295at 345.230 kb on - strand, within BT0295at 345.288 kb on - strand, within BT0295at 345.288 kb on - strand, within BT0295at 345.400 kb on - strand, within BT0295at 345.409 kb on - strand, within BT0295at 345.445 kb on - strand, within BT0295at 345.618 kb on - strand, within BT0295at 345.646 kb on + strandat 345.695 kb on - strandat 345.757 kb on - strandat 345.758 kb on + strandat 345.758 kb on + strandat 345.758 kb on + strandat 345.762 kb on + strandat 345.910 kb on - strandat 345.935 kb on - strandat 345.973 kb on - strandat 345.979 kb on - strandat 346.067 kb on - strandat 346.092 kb on + strand, within BT0296at 346.122 kb on + strand, within BT0296at 346.125 kb on + strand, within BT0296at 346.212 kb on + strand, within BT0296at 346.297 kb on + strand, within BT0296at 346.299 kb on + strand, within BT0296at 346.309 kb on - strand, within BT0296at 346.318 kb on + strand, within BT0296at 346.352 kb on - strand, within BT0296at 346.353 kb on + strand, within BT0296at 346.354 kb on - strand, within BT0296at 346.362 kb on + strand, within BT0296at 346.363 kb on - strand, within BT0296at 346.510 kb on - strand, within BT0296at 346.510 kb on - strand, within BT0296at 346.576 kb on - strand, within BT0296at 346.578 kb on - strand, within BT0296at 346.578 kb on - strand, within BT0296at 346.637 kb on - strand, within BT0296at 346.670 kb on - strand, within BT0296at 346.839 kb on - strand, within BT0296at 346.914 kb on - strand, within BT0296at 346.918 kb on - strand, within BT0296at 347.045 kb on - strand, within BT0296at 347.072 kb on - strand, within BT0296at 347.072 kb on - strand, within BT0296at 347.072 kb on - strand, within BT0296at 347.072 kb on - strand, within BT0296at 347.148 kb on - strand, within BT0296at 347.195 kb on - strand, within BT0296at 347.284 kb on + strand, within BT0296at 347.315 kb on - strand, within BT0296at 347.367 kb on + strand, within BT0296at 347.396 kb on - strand, within BT0296at 347.397 kb on + strand, within BT0296at 347.493 kb on - strand, within BT0296at 347.508 kb on - strand, within BT0296at 347.530 kb on - strand, within BT0296at 347.628 kb on + strand, within BT0296at 347.689 kb on - strand, within BT0296at 347.764 kb on - strand, within BT0296at 347.800 kb on - strand, within BT0296at 347.902 kb on - strand, within BT0296at 348.119 kb on - strand, within BT0296at 348.247 kb on - strand, within BT0296at 348.355 kb on - strand, within BT0296at 348.355 kb on - strand, within BT0296at 348.503 kb on - strand, within BT0296at 348.544 kb on - strand, within BT0296at 348.610 kb on - strand, within BT0296at 348.634 kb on - strand, within BT0296at 348.691 kb on - strand, within BT0296at 348.721 kb on - strand, within BT0296at 348.734 kb on - strandat 348.913 kb on - strandat 348.958 kb on + strandat 349.005 kb on + strandat 349.072 kb on - strandat 349.072 kb on - strandat 349.093 kb on + strandat 349.096 kb on + strandat 349.277 kb on - strand, within BT0297at 349.315 kb on - strand, within BT0297at 349.357 kb on - strand, within BT0297at 349.425 kb on - strand, within BT0297at 349.475 kb on - strand, within BT0297at 349.518 kb on + strand, within BT0297at 349.539 kb on - strand, within BT0297at 349.579 kb on + strand, within BT0297at 349.604 kb on + strand, within BT0297at 349.682 kb on + strand, within BT0297at 349.729 kb on - strand, within BT0297at 350.002 kb on + strand, within BT0297

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction BHIS with Paraquat dichloride 0.1 mg/ml
remove
344,749 - -0.8
344,799 - -1.1
344,863 - -1.3
344,863 - +0.4
344,940 - BT0295 0.11 -0.9
344,970 - BT0295 0.15 +0.5
345,229 + BT0295 0.44 -0.2
345,230 - BT0295 0.44 -1.7
345,230 - BT0295 0.44 +0.5
345,230 - BT0295 0.44 +0.3
345,288 - BT0295 0.50 -0.4
345,288 - BT0295 0.50 -1.0
345,400 - BT0295 0.63 -0.3
345,409 - BT0295 0.64 -1.2
345,445 - BT0295 0.68 -2.2
345,618 - BT0295 0.87 -2.2
345,646 + -0.2
345,695 - -1.2
345,757 - +0.0
345,758 + +0.5
345,758 + -2.0
345,758 + -1.8
345,762 + -0.7
345,910 - -0.7
345,935 - -1.4
345,973 - -0.8
345,979 - -2.7
346,067 - -2.6
346,092 + BT0296 0.10 -2.5
346,122 + BT0296 0.11 -4.2
346,125 + BT0296 0.11 +2.4
346,212 + BT0296 0.14 -0.9
346,297 + BT0296 0.17 -1.3
346,299 + BT0296 0.17 -2.4
346,309 - BT0296 0.17 -0.5
346,318 + BT0296 0.17 -0.7
346,352 - BT0296 0.18 +0.2
346,353 + BT0296 0.18 -1.2
346,354 - BT0296 0.18 -1.5
346,362 + BT0296 0.19 -2.1
346,363 - BT0296 0.19 -0.4
346,510 - BT0296 0.23 -0.6
346,510 - BT0296 0.23 -2.1
346,576 - BT0296 0.25 -1.5
346,578 - BT0296 0.25 -1.9
346,578 - BT0296 0.25 -1.2
346,637 - BT0296 0.27 -3.7
346,670 - BT0296 0.28 -1.8
346,839 - BT0296 0.33 +0.7
346,914 - BT0296 0.35 -0.2
346,918 - BT0296 0.35 -0.3
347,045 - BT0296 0.39 -2.8
347,072 - BT0296 0.40 +1.6
347,072 - BT0296 0.40 +0.3
347,072 - BT0296 0.40 -2.3
347,072 - BT0296 0.40 -1.3
347,148 - BT0296 0.42 -1.7
347,195 - BT0296 0.44 -0.5
347,284 + BT0296 0.46 -1.1
347,315 - BT0296 0.47 -0.7
347,367 + BT0296 0.49 +0.3
347,396 - BT0296 0.50 -1.3
347,397 + BT0296 0.50 -2.1
347,493 - BT0296 0.53 -1.0
347,508 - BT0296 0.53 +0.8
347,530 - BT0296 0.54 +0.2
347,628 + BT0296 0.57 +0.4
347,689 - BT0296 0.59 -1.1
347,764 - BT0296 0.61 -0.2
347,800 - BT0296 0.62 -2.3
347,902 - BT0296 0.65 +2.0
348,119 - BT0296 0.72 -1.0
348,247 - BT0296 0.76 +0.5
348,355 - BT0296 0.79 -3.3
348,355 - BT0296 0.79 +0.2
348,503 - BT0296 0.83 -0.6
348,544 - BT0296 0.85 -1.1
348,610 - BT0296 0.87 +0.6
348,634 - BT0296 0.87 -2.7
348,691 - BT0296 0.89 +1.1
348,721 - BT0296 0.90 -3.9
348,734 - +0.0
348,913 - -1.6
348,958 + -1.5
349,005 + -3.1
349,072 - +1.1
349,072 - +0.7
349,093 + -0.2
349,096 + -1.8
349,277 - BT0297 0.14 -0.5
349,315 - BT0297 0.16 +0.1
349,357 - BT0297 0.19 -1.7
349,425 - BT0297 0.23 +0.4
349,475 - BT0297 0.27 -0.5
349,518 + BT0297 0.30 -0.1
349,539 - BT0297 0.31 +0.8
349,579 + BT0297 0.34 -2.6
349,604 + BT0297 0.35 -0.4
349,682 + BT0297 0.41 -3.3
349,729 - BT0297 0.44 -2.2
350,002 + BT0297 0.62 +0.4

Or see this region's nucleotide sequence