Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0005

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
2,483	-		BT0003	0.79	-2.5
2,521	-		BT0003	0.84	+0.4
2,528	+		BT0003	0.84	-1.2
2,534	+		BT0003	0.85	+1.2
2,535	-		BT0003	0.85	-0.4
2,535	-		BT0003	0.85	-2.4
2,556	-		BT0003	0.88	-2.2
2,573	+				-1.3
2,697	-				-3.5
2,697	-				-3.6
2,697	-				-0.2
2,707	-				-0.0
2,777	-				-1.9
2,797	-				-1.3
2,813	-				+0.2
2,955	-		BT0004	0.26	+1.7
2,955	-		BT0004	0.26	-1.3
3,192	+		BT0004	0.61	-2.2
3,232	+		BT0004	0.67	+0.4
3,422	-				-0.0
3,426	-				+0.5
3,458	-				+0.1
3,550	-		BT0005	0.17	-1.6
3,557	+		BT0005	0.18	-3.3
3,638	-		BT0005	0.33	-1.2
3,694	-		BT0005	0.44	-3.0
3,696	+		BT0005	0.44	-1.6
3,697	-		BT0005	0.44	-1.2
3,746	+		BT0005	0.53	-1.9
3,747	-		BT0005	0.53	-0.2
3,747	-		BT0005	0.53	+0.7
3,785	+		BT0005	0.61	-2.9
3,872	-		BT0005	0.77	+1.1
3,917	+		BT0005	0.85	-0.9
3,918	-		BT0005	0.85	-4.8
3,918	-		BT0005	0.85	-3.2
4,104	+				-1.2
4,208	-		BT0006	0.27	-4.8
4,258	-		BT0006	0.38	-1.2
4,278	-		BT0006	0.43	+0.8
4,278	-		BT0006	0.43	-0.3
4,280	-		BT0006	0.43	-0.8
4,280	-		BT0006	0.43	-1.9
4,291	-		BT0006	0.45	+0.1
4,301	-		BT0006	0.48	-2.2
4,304	+		BT0006	0.48	-1.6
4,324	+		BT0006	0.53	-2.5
4,335	-		BT0006	0.55	-1.9
4,364	-		BT0006	0.62	-1.0
4,367	+		BT0006	0.62	-1.0
4,486	+				-0.1
4,567	-		BT0007	0.28	+0.7
4,569	-		BT0007	0.28	-1.5
4,571	-		BT0007	0.29	+0.8
4,714	-		BT0007	0.65	-0.6
4,714	-		BT0007	0.65	-0.3
4,747	+		BT0007	0.74	+0.8
4,969	-				-2.9