Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_17

Experiment: BHIS with Paraquat dichloride 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS with Paraquat dichloride 0.1 mg/ml
15,738	+		p5482_16	0.63	+1.1
15,739	-		p5482_16	0.63	-1.9
15,740	+		p5482_16	0.63	+3.6
15,740	+		p5482_16	0.63	-0.6
15,740	+		p5482_16	0.63	+0.6
15,741	-		p5482_16	0.63	+0.1
15,741	-		p5482_16	0.63	+2.0
15,741	-		p5482_16	0.63	+1.6
15,741	-		p5482_16	0.63	+2.1
15,741	-		p5482_16	0.63	-2.2
15,741	-		p5482_16	0.63	+1.2
15,743	-				-0.7
15,815	-		p5482_16	0.70	-0.8
15,817	-		p5482_16	0.70	+0.7
15,817	-		p5482_16	0.70	+0.3
15,817	-		p5482_16	0.70	+1.3
15,817	-		p5482_16	0.70	+0.9
15,817	-		p5482_16	0.70	+0.2
15,817	-		p5482_16	0.70	-0.1
15,819	-		p5482_16	0.71	-0.5
15,819	-		p5482_16	0.71	+0.7
15,819	-		p5482_16	0.71	-0.2
15,873	-		p5482_16	0.76	-1.4
15,873	-		p5482_16	0.76	+1.9
15,878	-		p5482_16	0.76	-0.5
15,880	-		p5482_16	0.76	+2.2
15,880	-		p5482_16	0.76	+1.4
15,880	-		p5482_16	0.76	-1.8
15,880	-		p5482_16	0.76	-0.8
15,880	-		p5482_16	0.76	-0.8
15,880	-		p5482_16	0.76	+3.6
15,884	+		p5482_16	0.77	+1.2
15,885	-		p5482_16	0.77	+2.2
15,887	-		p5482_16	0.77	-0.9
15,897	-		p5482_16	0.78	+2.6
16,025	-		p5482_16	0.89	-0.9
16,139	+				+1.6
16,140	-				-1.2
16,140	-				+1.1
16,140	-				+1.6
16,234	-				-1.2
16,281	-				-2.5
16,324	-				-0.5
16,424	-				+0.8
16,487	-				-2.0
16,522	-				-0.6
16,522	-				+0.6
16,522	-				-0.8
16,522	-				+1.6
16,522	-				-1.5
16,543	-				-3.6
16,610	+				+1.7
16,630	-				+2.0
16,630	-				+0.4
16,640	-				-0.8
16,657	+				-2.0
16,666	+				+0.9
16,667	-				-0.9
16,686	-				+0.3
16,686	-				-1.6
16,686	-				-0.8
16,689	+				+0.1
16,689	+				+1.6
16,703	+		p5482_17	0.12	-0.4
16,703	+		p5482_17	0.12	-1.3
16,816	+		p5482_17	0.66	-0.8
16,816	+		p5482_17	0.66	+0.8
16,816	+		p5482_17	0.66	-0.9
16,816	+		p5482_17	0.66	-2.2
16,816	+		p5482_17	0.66	-1.1
16,816	+		p5482_17	0.66	+0.6
16,816	+		p5482_17	0.66	+0.3
16,817	-		p5482_17	0.66	-1.9
16,869	+				-1.7
16,870	-				+2.6
16,886	-				+0.6
16,890	+				+0.6
16,898	-				-0.8
16,909	-				+0.4
16,999	+		p5482_18	0.14	-0.5
16,999	+		p5482_18	0.14	-1.5
17,000	-		p5482_18	0.14	+1.3
17,001	+		p5482_18	0.15	+0.2
17,019	+		p5482_18	0.17	+0.4
17,047	+		p5482_18	0.21	+0.9
17,047	+		p5482_18	0.21	-2.2
17,048	-		p5482_18	0.21	+2.6
17,085	+		p5482_18	0.26	-0.2
17,085	+		p5482_18	0.26	+0.1
17,086	-		p5482_18	0.27	+2.6
17,086	-		p5482_18	0.27	-0.3
17,145	-		p5482_18	0.35	-1.3
17,231	+		p5482_18	0.47	+0.7
17,231	+		p5482_18	0.47	-0.1
17,231	+		p5482_18	0.47	-3.0
17,231	+		p5482_18	0.47	-0.8
17,231	+		p5482_18	0.47	+0.1
17,232	-		p5482_18	0.47	+0.7
17,232	-		p5482_18	0.47	-1.5
17,232	-		p5482_18	0.47	-1.4
17,232	-				+2.6
17,232	-		p5482_18	0.47	-0.9
17,232	-		p5482_18	0.47	-1.3
17,232	-		p5482_18	0.47	+0.6
17,232	-		p5482_18	0.47	-2.3
17,232	-		p5482_18	0.47	+0.1
17,308	-		p5482_18	0.58	-1.3
17,308	-		p5482_18	0.58	+1.2
17,308	-		p5482_18	0.58	+0.1
17,313	+		p5482_18	0.59	+2.2
17,313	+		p5482_18	0.59	-0.6
17,313	+		p5482_18	0.59	-2.0
17,314	-		p5482_18	0.59	-1.4
17,314	-		p5482_18	0.59	-0.7
17,314	-		p5482_18	0.59	-1.4
17,339	-		p5482_18	0.62	-1.0
17,339	-		p5482_18	0.62	+1.2
17,339	-		p5482_18	0.62	-0.9
17,339	-		p5482_18	0.62	+1.4
17,367	-		p5482_18	0.66	-2.0
17,438	+		p5482_18	0.76	+0.8
17,440	+		p5482_18	0.77	+1.6
17,441	-		p5482_18	0.77	-1.3
17,441	-		p5482_18	0.77	-1.9
17,441	-		p5482_18	0.77	+0.5
17,441	-		p5482_18	0.77	+0.4
17,583	+				+0.8
17,583	+				-0.2
17,583	+				+0.1
17,584	-				+0.9
17,584	-				-1.2
17,584	-				-2.4
17,584	-				+1.6
17,584	-				-1.9
17,584	-				+0.5
17,590	-				+2.6
17,590	-				+0.9
17,596	-				-0.2
17,610	-				-1.5
17,629	+				-3.3
17,629	+				+0.3
17,670	+		p5482_19	0.12	-0.9
17,670	+		p5482_19	0.12	-1.7
17,671	-		p5482_19	0.12	+1.6
17,671	-		p5482_19	0.12	+0.7
17,671	-		p5482_19	0.12	+0.3
17,671	-		p5482_19	0.12	-0.3
17,671	-		p5482_19	0.12	-1.7
17,685	+		p5482_19	0.15	+0.6
17,685	+		p5482_19	0.15	-1.3
17,686	-		p5482_19	0.15	+1.6
17,687	+		p5482_19	0.15	-1.3
17,687	+		p5482_19	0.15	+1.6
17,688	-		p5482_19	0.15	+2.6
17,706	+		p5482_19	0.19	+0.1
17,707	-		p5482_19	0.19	-1.7
17,709	-		p5482_19	0.20	+1.4
17,709	-		p5482_19	0.20	+1.8
17,757	+		p5482_19	0.29	-0.1
17,757	+		p5482_19	0.29	+1.2
17,757	+		p5482_19	0.29	-1.1
17,757	+		p5482_19	0.29	-1.0
17,758	-		p5482_19	0.29	+0.8
17,786	+		p5482_19	0.35	-2.7
17,787	-		p5482_19	0.35	-1.1
17,787	-		p5482_19	0.35	-1.1
17,787	-		p5482_19	0.35	-1.1
17,787	-		p5482_19	0.35	+1.1
17,787	-		p5482_19	0.35	-3.1
17,853	+		p5482_19	0.48	-1.8
17,854	-		p5482_19	0.48	-2.1
17,856	+		p5482_19	0.49	+0.2
17,856	+		p5482_19	0.49	-1.8
17,856	+		p5482_19	0.49	+0.1
17,857	-		p5482_19	0.49	-0.6