Experiment: H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04600 and MMP_RS04605 are separated by 154 nucleotides MMP_RS04605 and MMP_RS04610 are separated by 149 nucleotides MMP_RS04610 and MMP_RS04615 are separated by 121 nucleotides MMP_RS04615 and MMP_RS04620 overlap by 8 nucleotides
MMP_RS04600: MMP_RS04600 - tetratricopeptide repeat protein, at 877,974 to 879,140
_RS04600
MMP_RS04605: MMP_RS04605 - cobalt ECF transporter T component CbiQ, at 879,295 to 880,062
_RS04605
MMP_RS04610: MMP_RS04610 - Dabb family protein, at 880,212 to 880,514
_RS04610
MMP_RS04615: MMP_RS04615 - PDGLE domain-containing protein, at 880,636 to 880,962
_RS04615
MMP_RS04620: MMP_RS04620 - cobalt transporter CbiM, at 880,955 to 881,593
_RS04620
Position (kb) 879
880
881 Strain fitness (log2 ratio) -2
-1
0
1 at 878.338 kb on - strand, within MMP_RS04600 at 878.339 kb on + strand, within MMP_RS04600 at 878.354 kb on + strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.373 kb on - strand, within MMP_RS04600 at 878.374 kb on + strand, within MMP_RS04600 at 878.409 kb on - strand, within MMP_RS04600 at 878.410 kb on + strand, within MMP_RS04600 at 878.513 kb on - strand, within MMP_RS04600 at 878.524 kb on + strand, within MMP_RS04600 at 878.528 kb on + strand, within MMP_RS04600 at 878.531 kb on - strand, within MMP_RS04600 at 878.532 kb on + strand, within MMP_RS04600 at 878.532 kb on + strand, within MMP_RS04600 at 878.709 kb on + strand, within MMP_RS04600 at 878.709 kb on + strand, within MMP_RS04600 at 878.710 kb on - strand, within MMP_RS04600 at 878.711 kb on + strand, within MMP_RS04600 at 878.711 kb on + strand, within MMP_RS04600 at 878.728 kb on + strand, within MMP_RS04600 at 878.732 kb on - strand, within MMP_RS04600 at 878.732 kb on - strand, within MMP_RS04600 at 878.735 kb on - strand, within MMP_RS04600 at 878.735 kb on - strand, within MMP_RS04600 at 878.736 kb on + strand, within MMP_RS04600 at 878.738 kb on - strand, within MMP_RS04600 at 878.738 kb on - strand, within MMP_RS04600 at 878.739 kb on + strand, within MMP_RS04600 at 878.740 kb on - strand, within MMP_RS04600 at 878.741 kb on + strand, within MMP_RS04600 at 878.741 kb on + strand, within MMP_RS04600 at 878.765 kb on - strand, within MMP_RS04600 at 878.776 kb on + strand, within MMP_RS04600 at 878.776 kb on + strand, within MMP_RS04600 at 878.779 kb on - strand, within MMP_RS04600 at 878.779 kb on - strand, within MMP_RS04600 at 878.882 kb on - strand, within MMP_RS04600 at 878.891 kb on - strand, within MMP_RS04600 at 878.922 kb on - strand, within MMP_RS04600 at 879.062 kb on - strand at 879.062 kb on - strand at 879.062 kb on - strand at 879.063 kb on + strand at 879.133 kb on + strand at 879.133 kb on + strand at 879.162 kb on + strand at 879.164 kb on + strand at 879.164 kb on + strand at 879.166 kb on - strand at 879.167 kb on + strand at 879.169 kb on - strand at 879.169 kb on - strand at 879.170 kb on + strand at 879.170 kb on + strand at 879.170 kb on + strand at 879.189 kb on - strand at 879.193 kb on - strand at 879.194 kb on + strand at 879.194 kb on + strand at 879.201 kb on - strand at 879.202 kb on + strand at 879.236 kb on + strand at 879.236 kb on + strand at 879.237 kb on - strand at 879.244 kb on + strand at 879.250 kb on + strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.252 kb on - strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.253 kb on + strand at 879.306 kb on - strand at 879.322 kb on - strand at 879.333 kb on - strand at 879.450 kb on + strand, within MMP_RS04605 at 879.563 kb on + strand, within MMP_RS04605 at 879.577 kb on - strand, within MMP_RS04605 at 879.592 kb on + strand, within MMP_RS04605 at 879.656 kb on + strand, within MMP_RS04605 at 879.993 kb on - strand at 880.000 kb on - strand at 880.087 kb on + strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.089 kb on - strand at 880.090 kb on + strand at 880.094 kb on - strand at 880.110 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.117 kb on + strand at 880.122 kb on - strand at 880.128 kb on + strand at 880.132 kb on - strand at 880.132 kb on - strand at 880.139 kb on - strand at 880.140 kb on + strand at 880.144 kb on - strand at 880.156 kb on - strand at 880.159 kb on - strand at 880.173 kb on - strand at 880.193 kb on + strand at 880.193 kb on + strand at 880.210 kb on + strand at 880.214 kb on + strand at 880.305 kb on - strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.306 kb on + strand, within MMP_RS04610 at 880.460 kb on - strand, within MMP_RS04610 at 880.515 kb on + strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.518 kb on - strand at 880.519 kb on + strand at 880.519 kb on + strand at 880.562 kb on - strand at 880.568 kb on - strand at 880.568 kb on - strand at 880.569 kb on + strand at 880.569 kb on + strand at 880.572 kb on - strand at 880.576 kb on + strand at 880.576 kb on + strand at 880.704 kb on - strand, within MMP_RS04615 at 880.889 kb on + strand, within MMP_RS04615 at 880.912 kb on - strand at 880.912 kb on - strand, within MMP_RS04615 at 880.913 kb on + strand, within MMP_RS04615 at 881.024 kb on - strand, within MMP_RS04620
Per-strain Table
Position Strand Gene LocusTag Fraction H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 FREE remove 878,338 - MMP_RS04600 0.31 -0.5 878,339 + MMP_RS04600 0.31 +0.1 878,354 + MMP_RS04600 0.33 -0.1 878,373 - MMP_RS04600 0.34 +0.1 878,373 - MMP_RS04600 0.34 +0.0 878,373 - MMP_RS04600 0.34 +0.2 878,374 + MMP_RS04600 0.34 -0.2 878,409 - MMP_RS04600 0.37 -1.2 878,410 + MMP_RS04600 0.37 +0.1 878,513 - MMP_RS04600 0.46 +0.0 878,524 + MMP_RS04600 0.47 -0.8 878,528 + MMP_RS04600 0.47 -0.4 878,531 - MMP_RS04600 0.48 +0.1 878,532 + MMP_RS04600 0.48 +0.6 878,532 + MMP_RS04600 0.48 +0.2 878,709 + MMP_RS04600 0.63 -0.3 878,709 + MMP_RS04600 0.63 +0.3 878,710 - MMP_RS04600 0.63 -0.1 878,711 + MMP_RS04600 0.63 -0.0 878,711 + MMP_RS04600 0.63 +0.5 878,728 + MMP_RS04600 0.65 +0.9 878,732 - MMP_RS04600 0.65 -0.1 878,732 - MMP_RS04600 0.65 -0.3 878,735 - MMP_RS04600 0.65 +0.1 878,735 - MMP_RS04600 0.65 +0.2 878,736 + MMP_RS04600 0.65 -0.4 878,738 - MMP_RS04600 0.65 +0.0 878,738 - MMP_RS04600 0.65 +0.4 878,739 + MMP_RS04600 0.66 +0.2 878,740 - MMP_RS04600 0.66 -0.1 878,741 + MMP_RS04600 0.66 +1.3 878,741 + MMP_RS04600 0.66 +0.6 878,765 - MMP_RS04600 0.68 +0.0 878,776 + MMP_RS04600 0.69 -0.0 878,776 + MMP_RS04600 0.69 +0.1 878,779 - MMP_RS04600 0.69 +1.1 878,779 - MMP_RS04600 0.69 +0.6 878,882 - MMP_RS04600 0.78 +1.5 878,891 - MMP_RS04600 0.79 -0.2 878,922 - MMP_RS04600 0.81 +0.2 879,062 - -0.6 879,062 - -0.0 879,062 - +0.1 879,063 + -0.2 879,133 + -0.3 879,133 + -0.2 879,162 + -0.1 879,164 + +0.2 879,164 + -0.6 879,166 - +0.7 879,167 + +0.8 879,169 - +0.1 879,169 - -0.2 879,170 + -0.2 879,170 + -0.2 879,170 + -0.2 879,189 - -0.5 879,193 - -0.4 879,194 + +0.5 879,194 + -0.6 879,201 - -0.5 879,202 + +0.8 879,236 + -0.2 879,236 + -0.2 879,237 - +0.3 879,244 + -0.4 879,250 + +0.4 879,252 - -0.2 879,252 - -0.5 879,252 - -0.1 879,252 - -0.0 879,252 - +0.2 879,252 - -0.7 879,252 - -0.3 879,253 + -0.1 879,253 + -0.1 879,253 + +0.4 879,306 - -0.7 879,322 - -1.5 879,333 - -0.4 879,450 + MMP_RS04605 0.20 -0.5 879,563 + MMP_RS04605 0.35 -2.3 879,577 - MMP_RS04605 0.37 -1.8 879,592 + MMP_RS04605 0.39 -2.0 879,656 + MMP_RS04605 0.47 -2.1 879,993 - -2.6 880,000 - -0.8 880,087 + -1.6 880,089 - -0.1 880,089 - -0.2 880,089 - -2.0 880,090 + -1.4 880,094 - -0.1 880,110 + -1.3 880,117 + +0.1 880,117 + +1.1 880,117 + -0.1 880,117 + -1.3 880,122 - -1.0 880,128 + -0.9 880,132 - +0.1 880,132 - -0.7 880,139 - -0.2 880,140 + -0.6 880,144 - +0.4 880,156 - -0.1 880,159 - -0.2 880,173 - +0.2 880,193 + +0.9 880,193 + -0.8 880,210 + +1.4 880,214 + +0.1 880,305 - MMP_RS04610 0.31 -0.1 880,306 + MMP_RS04610 0.31 +0.4 880,306 + MMP_RS04610 0.31 -0.1 880,460 - MMP_RS04610 0.82 +0.4 880,515 + -0.0 880,518 - -0.0 880,518 - +0.2 880,518 - -1.0 880,519 + -0.2 880,519 + +0.5 880,562 - -0.0 880,568 - +0.1 880,568 - +0.0 880,569 + -0.2 880,569 + -0.1 880,572 - +0.1 880,576 + +0.4 880,576 + +0.4 880,704 - MMP_RS04615 0.21 -1.1 880,889 + MMP_RS04615 0.77 -1.0 880,912 - +1.4 880,912 - MMP_RS04615 0.84 -0.7 880,913 + MMP_RS04615 0.85 -2.6 881,024 - MMP_RS04620 0.11 -1.6
Or see this region's nucleotide sequence