Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS13705

Experiment: R2A with Nickel (II) chloride 0.625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK54_RS13700 and LRK54_RS13705 are separated by 40 nucleotidesLRK54_RS13705 and LRK54_RS13710 are separated by 14 nucleotidesLRK54_RS13710 and LRK54_RS13715 are separated by 117 nucleotides LRK54_RS13700: LRK54_RS13700 - magnesium and cobalt transport protein CorA, at 3,060,376 to 3,061,392 _RS13700 LRK54_RS13705: LRK54_RS13705 - DUF4105 domain-containing protein, at 3,061,433 to 3,062,650 _RS13705 LRK54_RS13710: LRK54_RS13710 - CBS domain-containing protein, at 3,062,665 to 3,063,504 _RS13710 LRK54_RS13715: LRK54_RS13715 - rRNA maturation RNase YbeY, at 3,063,622 to 3,064,083 _RS13715 Position (kb) 3061 3062 3063Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 3060.453 kb on - strandat 3060.453 kb on - strandat 3060.500 kb on + strand, within LRK54_RS13700at 3060.668 kb on + strand, within LRK54_RS13700at 3060.668 kb on + strand, within LRK54_RS13700at 3060.668 kb on + strand, within LRK54_RS13700at 3060.669 kb on - strand, within LRK54_RS13700at 3060.669 kb on - strand, within LRK54_RS13700at 3060.683 kb on + strand, within LRK54_RS13700at 3060.683 kb on + strand, within LRK54_RS13700at 3060.683 kb on + strand, within LRK54_RS13700at 3060.683 kb on + strand, within LRK54_RS13700at 3060.683 kb on + strand, within LRK54_RS13700at 3060.684 kb on - strand, within LRK54_RS13700at 3060.684 kb on - strand, within LRK54_RS13700at 3060.684 kb on - strand, within LRK54_RS13700at 3060.684 kb on - strand, within LRK54_RS13700at 3060.684 kb on - strand, within LRK54_RS13700at 3060.704 kb on - strand, within LRK54_RS13700at 3060.797 kb on + strand, within LRK54_RS13700at 3060.797 kb on + strand, within LRK54_RS13700at 3060.797 kb on + strand, within LRK54_RS13700at 3060.797 kb on + strand, within LRK54_RS13700at 3060.797 kb on + strand, within LRK54_RS13700at 3060.798 kb on - strand, within LRK54_RS13700at 3060.798 kb on - strand, within LRK54_RS13700at 3060.798 kb on - strand, within LRK54_RS13700at 3060.798 kb on - strand, within LRK54_RS13700at 3060.798 kb on - strand, within LRK54_RS13700at 3060.923 kb on + strand, within LRK54_RS13700at 3060.923 kb on + strand, within LRK54_RS13700at 3060.923 kb on + strand, within LRK54_RS13700at 3060.923 kb on + strand, within LRK54_RS13700at 3060.923 kb on + strand, within LRK54_RS13700at 3060.923 kb on + strand, within LRK54_RS13700at 3060.924 kb on - strand, within LRK54_RS13700at 3060.924 kb on - strand, within LRK54_RS13700at 3060.924 kb on - strand, within LRK54_RS13700at 3060.924 kb on - strand, within LRK54_RS13700at 3060.924 kb on - strand, within LRK54_RS13700at 3060.932 kb on + strand, within LRK54_RS13700at 3060.932 kb on + strand, within LRK54_RS13700at 3060.933 kb on - strand, within LRK54_RS13700at 3060.933 kb on - strand, within LRK54_RS13700at 3060.992 kb on + strand, within LRK54_RS13700at 3060.993 kb on - strand, within LRK54_RS13700at 3060.993 kb on - strand, within LRK54_RS13700at 3060.993 kb on - strand, within LRK54_RS13700at 3060.993 kb on - strand, within LRK54_RS13700at 3060.993 kb on - strand, within LRK54_RS13700at 3061.028 kb on + strand, within LRK54_RS13700at 3061.121 kb on + strand, within LRK54_RS13700at 3061.122 kb on - strand, within LRK54_RS13700at 3061.122 kb on - strand, within LRK54_RS13700at 3061.229 kb on + strand, within LRK54_RS13700at 3061.230 kb on - strand, within LRK54_RS13700at 3061.230 kb on - strand, within LRK54_RS13700at 3061.230 kb on - strand, within LRK54_RS13700at 3061.230 kb on - strand, within LRK54_RS13700at 3061.230 kb on - strand, within LRK54_RS13700at 3061.230 kb on - strand, within LRK54_RS13700at 3061.322 kb on + strandat 3062.666 kb on + strandat 3062.666 kb on + strandat 3062.667 kb on - strandat 3062.667 kb on - strandat 3062.729 kb on + strandat 3062.729 kb on + strandat 3062.729 kb on + strandat 3062.729 kb on + strandat 3062.729 kb on + strandat 3062.729 kb on + strandat 3062.729 kb on + strandat 3062.730 kb on - strandat 3062.730 kb on - strandat 3062.730 kb on - strandat 3062.807 kb on + strand, within LRK54_RS13710at 3062.807 kb on + strand, within LRK54_RS13710at 3062.808 kb on - strand, within LRK54_RS13710at 3062.808 kb on - strand, within LRK54_RS13710at 3062.808 kb on - strand, within LRK54_RS13710at 3062.808 kb on - strand, within LRK54_RS13710at 3062.808 kb on - strand, within LRK54_RS13710at 3063.003 kb on - strand, within LRK54_RS13710at 3063.140 kb on + strand, within LRK54_RS13710at 3063.141 kb on - strand, within LRK54_RS13710at 3063.141 kb on - strand, within LRK54_RS13710at 3063.141 kb on - strand, within LRK54_RS13710at 3063.141 kb on - strand, within LRK54_RS13710at 3063.141 kb on - strand, within LRK54_RS13710at 3063.141 kb on - strand, within LRK54_RS13710at 3063.141 kb on - strand, within LRK54_RS13710at 3063.141 kb on - strand, within LRK54_RS13710at 3063.296 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.298 kb on + strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.299 kb on - strand, within LRK54_RS13710at 3063.484 kb on - strandat 3063.506 kb on - strandat 3063.506 kb on - strandat 3063.506 kb on - strandat 3063.506 kb on - strandat 3063.506 kb on - strandat 3063.506 kb on - strandat 3063.506 kb on - strandat 3063.506 kb on - strandat 3063.506 kb on - strandat 3063.548 kb on + strandat 3063.548 kb on + strandat 3063.630 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Nickel (II) chloride 0.625 mM
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3,060,453 - -0.7
3,060,453 - -0.5
3,060,500 + LRK54_RS13700 0.12 +1.5
3,060,668 + LRK54_RS13700 0.29 +1.1
3,060,668 + LRK54_RS13700 0.29 +0.4
3,060,668 + LRK54_RS13700 0.29 +0.4
3,060,669 - LRK54_RS13700 0.29 +0.4
3,060,669 - LRK54_RS13700 0.29 -0.4
3,060,683 + LRK54_RS13700 0.30 +2.1
3,060,683 + LRK54_RS13700 0.30 +0.5
3,060,683 + LRK54_RS13700 0.30 +0.7
3,060,683 + LRK54_RS13700 0.30 +0.9
3,060,683 + LRK54_RS13700 0.30 -0.1
3,060,684 - LRK54_RS13700 0.30 -0.2
3,060,684 - LRK54_RS13700 0.30 -2.2
3,060,684 - LRK54_RS13700 0.30 -0.1
3,060,684 - LRK54_RS13700 0.30 -0.3
3,060,684 - LRK54_RS13700 0.30 -1.1
3,060,704 - LRK54_RS13700 0.32 -0.1
3,060,797 + LRK54_RS13700 0.41 -0.7
3,060,797 + LRK54_RS13700 0.41 -1.1
3,060,797 + LRK54_RS13700 0.41 -0.4
3,060,797 + LRK54_RS13700 0.41 +0.8
3,060,797 + LRK54_RS13700 0.41 +1.7
3,060,798 - LRK54_RS13700 0.41 +0.6
3,060,798 - LRK54_RS13700 0.41 +0.4
3,060,798 - LRK54_RS13700 0.41 +1.3
3,060,798 - LRK54_RS13700 0.41 +0.1
3,060,798 - LRK54_RS13700 0.41 +1.6
3,060,923 + LRK54_RS13700 0.54 +1.8
3,060,923 + LRK54_RS13700 0.54 -0.1
3,060,923 + LRK54_RS13700 0.54 +0.5
3,060,923 + LRK54_RS13700 0.54 +0.5
3,060,923 + LRK54_RS13700 0.54 -0.4
3,060,923 + LRK54_RS13700 0.54 -0.1
3,060,924 - LRK54_RS13700 0.54 -0.5
3,060,924 - LRK54_RS13700 0.54 -0.8
3,060,924 - LRK54_RS13700 0.54 +1.3
3,060,924 - LRK54_RS13700 0.54 +0.0
3,060,924 - LRK54_RS13700 0.54 -0.1
3,060,932 + LRK54_RS13700 0.55 -0.2
3,060,932 + LRK54_RS13700 0.55 -1.1
3,060,933 - LRK54_RS13700 0.55 -0.9
3,060,933 - LRK54_RS13700 0.55 +0.9
3,060,992 + LRK54_RS13700 0.61 -0.2
3,060,993 - LRK54_RS13700 0.61 -0.2
3,060,993 - LRK54_RS13700 0.61 -0.5
3,060,993 - LRK54_RS13700 0.61 +0.8
3,060,993 - LRK54_RS13700 0.61 +0.2
3,060,993 - LRK54_RS13700 0.61 +0.4
3,061,028 + LRK54_RS13700 0.64 -0.1
3,061,121 + LRK54_RS13700 0.73 +0.4
3,061,122 - LRK54_RS13700 0.73 -0.1
3,061,122 - LRK54_RS13700 0.73 +1.1
3,061,229 + LRK54_RS13700 0.84 -2.4
3,061,230 - LRK54_RS13700 0.84 -2.4
3,061,230 - LRK54_RS13700 0.84 -1.7
3,061,230 - LRK54_RS13700 0.84 +0.6
3,061,230 - LRK54_RS13700 0.84 +0.8
3,061,230 - LRK54_RS13700 0.84 +0.3
3,061,230 - LRK54_RS13700 0.84 +0.5
3,061,322 + +1.6
3,062,666 + +1.1
3,062,666 + +0.3
3,062,667 - +0.0
3,062,667 - +0.3
3,062,729 + +7.8
3,062,729 + +8.1
3,062,729 + +7.5
3,062,729 + +7.9
3,062,729 + +7.6
3,062,729 + +7.7
3,062,729 + +7.5
3,062,730 - +6.3
3,062,730 - +8.7
3,062,730 - +7.6
3,062,807 + LRK54_RS13710 0.17 +8.4
3,062,807 + LRK54_RS13710 0.17 +7.2
3,062,808 - LRK54_RS13710 0.17 +7.0
3,062,808 - LRK54_RS13710 0.17 +8.4
3,062,808 - LRK54_RS13710 0.17 +8.6
3,062,808 - LRK54_RS13710 0.17 +8.0
3,062,808 - LRK54_RS13710 0.17 +7.5
3,063,003 - LRK54_RS13710 0.40 +8.0
3,063,140 + LRK54_RS13710 0.57 +5.8
3,063,141 - LRK54_RS13710 0.57 +4.8
3,063,141 - LRK54_RS13710 0.57 +8.1
3,063,141 - LRK54_RS13710 0.57 +7.2
3,063,141 - LRK54_RS13710 0.57 +8.1
3,063,141 - LRK54_RS13710 0.57 +8.0
3,063,141 - LRK54_RS13710 0.57 +7.5
3,063,141 - LRK54_RS13710 0.57 +8.8
3,063,141 - LRK54_RS13710 0.57 +7.7
3,063,296 + LRK54_RS13710 0.75 +9.0
3,063,298 + LRK54_RS13710 0.75 +6.6
3,063,298 + LRK54_RS13710 0.75 +7.3
3,063,298 + LRK54_RS13710 0.75 +5.9
3,063,298 + LRK54_RS13710 0.75 +8.8
3,063,298 + LRK54_RS13710 0.75 +7.3
3,063,298 + LRK54_RS13710 0.75 +8.1
3,063,298 + LRK54_RS13710 0.75 +7.3
3,063,298 + LRK54_RS13710 0.75 +7.8
3,063,298 + LRK54_RS13710 0.75 +7.4
3,063,298 + LRK54_RS13710 0.75 +8.0
3,063,298 + LRK54_RS13710 0.75 +7.2
3,063,298 + LRK54_RS13710 0.75 +7.4
3,063,298 + LRK54_RS13710 0.75 +5.8
3,063,299 - LRK54_RS13710 0.75 +8.2
3,063,299 - LRK54_RS13710 0.75 +8.3
3,063,299 - LRK54_RS13710 0.75 +6.9
3,063,299 - LRK54_RS13710 0.75 +6.7
3,063,299 - LRK54_RS13710 0.75 +7.8
3,063,299 - LRK54_RS13710 0.75 +8.1
3,063,299 - LRK54_RS13710 0.75 +7.4
3,063,299 - LRK54_RS13710 0.75 +8.1
3,063,299 - LRK54_RS13710 0.75 +6.2
3,063,299 - LRK54_RS13710 0.75 +7.6
3,063,299 - LRK54_RS13710 0.75 +5.4
3,063,299 - LRK54_RS13710 0.75 +8.4
3,063,299 - LRK54_RS13710 0.75 +8.5
3,063,484 - +8.3
3,063,506 - +3.4
3,063,506 - +2.4
3,063,506 - +3.1
3,063,506 - +2.5
3,063,506 - +3.3
3,063,506 - +4.6
3,063,506 - +2.3
3,063,506 - +4.8
3,063,506 - +1.9
3,063,548 + +0.5
3,063,548 + +3.1
3,063,630 - +1.9

Or see this region's nucleotide sequence