Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1774

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1773 and Ga0059261_1774 are separated by 737 nucleotidesGa0059261_1774 and Ga0059261_1775 are separated by 434 nucleotides Ga0059261_1773: Ga0059261_1773 - ParB-like nuclease domain, at 1,879,689 to 1,880,726 _1773 Ga0059261_1774: Ga0059261_1774 - hypothetical protein, at 1,881,464 to 1,881,982 _1774 Ga0059261_1775: Ga0059261_1775 - Transcriptional regulator/sugar kinase, at 1,882,417 to 1,883,595 _1775 Position (kb) 1881 1882Strain fitness (log2 ratio) -2 -1 0 1at 1881.450 kb on + strandat 1881.450 kb on + strandat 1881.450 kb on + strandat 1881.488 kb on + strandat 1881.488 kb on + strandat 1881.488 kb on + strandat 1881.489 kb on - strandat 1881.489 kb on - strandat 1881.489 kb on - strandat 1881.489 kb on - strandat 1881.546 kb on - strand, within Ga0059261_1774at 1881.546 kb on - strand, within Ga0059261_1774at 1882.182 kb on + strandat 1882.190 kb on + strandat 1882.190 kb on + strandat 1882.190 kb on + strandat 1882.190 kb on + strandat 1882.190 kb on + strandat 1882.190 kb on + strandat 1882.190 kb on + strandat 1882.190 kb on + strandat 1882.353 kb on + strandat 1882.353 kb on + strandat 1882.353 kb on + strandat 1882.353 kb on + strandat 1882.353 kb on + strandat 1882.353 kb on + strandat 1882.353 kb on + strandat 1882.353 kb on + strandat 1882.354 kb on - strandat 1882.354 kb on - strandat 1882.354 kb on - strandat 1882.439 kb on - strandat 1882.444 kb on - strandat 1882.444 kb on - strandat 1882.444 kb on - strandat 1882.444 kb on - strandat 1882.444 kb on - strandat 1882.444 kb on - strandat 1882.488 kb on - strandat 1882.488 kb on - strandat 1882.488 kb on - strandat 1882.488 kb on - strandat 1882.488 kb on - strandat 1882.678 kb on + strand, within Ga0059261_1775at 1882.678 kb on + strand, within Ga0059261_1775at 1882.678 kb on + strand, within Ga0059261_1775at 1882.678 kb on + strand, within Ga0059261_1775at 1882.678 kb on + strand, within Ga0059261_1775at 1882.678 kb on + strand, within Ga0059261_1775at 1882.679 kb on - strand, within Ga0059261_1775at 1882.679 kb on - strand, within Ga0059261_1775at 1882.684 kb on - strand, within Ga0059261_1775at 1882.684 kb on - strand, within Ga0059261_1775at 1882.684 kb on - strand, within Ga0059261_1775at 1882.787 kb on + strandat 1882.787 kb on + strand, within Ga0059261_1775at 1882.787 kb on + strandat 1882.787 kb on + strand, within Ga0059261_1775at 1882.787 kb on + strand, within Ga0059261_1775at 1882.788 kb on - strand, within Ga0059261_1775at 1882.788 kb on - strand, within Ga0059261_1775at 1882.788 kb on - strand, within Ga0059261_1775at 1882.788 kb on - strand, within Ga0059261_1775at 1882.788 kb on - strand, within Ga0059261_1775at 1882.845 kb on + strand, within Ga0059261_1775at 1882.845 kb on + strand, within Ga0059261_1775at 1882.845 kb on + strand, within Ga0059261_1775at 1882.845 kb on + strand, within Ga0059261_1775at 1882.846 kb on - strand, within Ga0059261_1775at 1882.846 kb on - strandat 1882.846 kb on - strand, within Ga0059261_1775at 1882.846 kb on - strand, within Ga0059261_1775at 1882.846 kb on - strand, within Ga0059261_1775at 1882.846 kb on - strand, within Ga0059261_1775at 1882.872 kb on + strand, within Ga0059261_1775at 1882.872 kb on + strand, within Ga0059261_1775at 1882.872 kb on + strand, within Ga0059261_1775at 1882.873 kb on - strand, within Ga0059261_1775at 1882.873 kb on - strand, within Ga0059261_1775at 1882.873 kb on - strand, within Ga0059261_1775at 1882.937 kb on + strand, within Ga0059261_1775at 1882.937 kb on + strand, within Ga0059261_1775at 1882.937 kb on + strand, within Ga0059261_1775at 1882.937 kb on + strand, within Ga0059261_1775at 1882.937 kb on + strand, within Ga0059261_1775at 1882.937 kb on + strand, within Ga0059261_1775at 1882.938 kb on - strand, within Ga0059261_1775at 1882.938 kb on - strand, within Ga0059261_1775at 1882.938 kb on - strand, within Ga0059261_1775at 1882.957 kb on + strand, within Ga0059261_1775at 1882.958 kb on - strand, within Ga0059261_1775at 1882.958 kb on - strand, within Ga0059261_1775

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,881,450 + +0.1
1,881,450 + +0.7
1,881,450 + -0.7
1,881,488 + +0.8
1,881,488 + -0.2
1,881,488 + +1.4
1,881,489 - +0.3
1,881,489 - +0.1
1,881,489 - +0.6
1,881,489 - +0.4
1,881,546 - Ga0059261_1774 0.16 +0.4
1,881,546 - Ga0059261_1774 0.16 +0.5
1,882,182 + +0.7
1,882,190 + +0.0
1,882,190 + -0.4
1,882,190 + +0.5
1,882,190 + -0.0
1,882,190 + -1.1
1,882,190 + -0.2
1,882,190 + -0.1
1,882,190 + +0.2
1,882,353 + +0.0
1,882,353 + +0.3
1,882,353 + +0.3
1,882,353 + +0.6
1,882,353 + +0.7
1,882,353 + +0.4
1,882,353 + +0.0
1,882,353 + -0.6
1,882,354 - +0.1
1,882,354 - +0.4
1,882,354 - +0.0
1,882,439 - +0.8
1,882,444 - +0.1
1,882,444 - +0.0
1,882,444 - -0.1
1,882,444 - -0.4
1,882,444 - -0.7
1,882,444 - -0.5
1,882,488 - -0.6
1,882,488 - +0.1
1,882,488 - -0.5
1,882,488 - -0.4
1,882,488 - -0.5
1,882,678 + Ga0059261_1775 0.22 +1.5
1,882,678 + Ga0059261_1775 0.22 -0.0
1,882,678 + Ga0059261_1775 0.22 +0.3
1,882,678 + Ga0059261_1775 0.22 -0.5
1,882,678 + Ga0059261_1775 0.22 -0.2
1,882,678 + Ga0059261_1775 0.22 +0.4
1,882,679 - Ga0059261_1775 0.22 -1.4
1,882,679 - Ga0059261_1775 0.22 +0.1
1,882,684 - Ga0059261_1775 0.23 +0.1
1,882,684 - Ga0059261_1775 0.23 +0.8
1,882,684 - Ga0059261_1775 0.23 -1.6
1,882,787 + +1.4
1,882,787 + Ga0059261_1775 0.31 +0.1
1,882,787 + +1.4
1,882,787 + Ga0059261_1775 0.31 +0.3
1,882,787 + Ga0059261_1775 0.31 +0.1
1,882,788 - Ga0059261_1775 0.31 +0.3
1,882,788 - Ga0059261_1775 0.31 -0.6
1,882,788 - Ga0059261_1775 0.31 -0.3
1,882,788 - Ga0059261_1775 0.31 -1.6
1,882,788 - Ga0059261_1775 0.31 -0.0
1,882,845 + Ga0059261_1775 0.36 +0.4
1,882,845 + Ga0059261_1775 0.36 -0.6
1,882,845 + Ga0059261_1775 0.36 -1.0
1,882,845 + Ga0059261_1775 0.36 +1.2
1,882,846 - Ga0059261_1775 0.36 +0.9
1,882,846 - +1.4
1,882,846 - Ga0059261_1775 0.36 -1.8
1,882,846 - Ga0059261_1775 0.36 -0.4
1,882,846 - Ga0059261_1775 0.36 -0.2
1,882,846 - Ga0059261_1775 0.36 -1.0
1,882,872 + Ga0059261_1775 0.39 +0.0
1,882,872 + Ga0059261_1775 0.39 -0.9
1,882,872 + Ga0059261_1775 0.39 -0.6
1,882,873 - Ga0059261_1775 0.39 -0.2
1,882,873 - Ga0059261_1775 0.39 -0.8
1,882,873 - Ga0059261_1775 0.39 -0.7
1,882,937 + Ga0059261_1775 0.44 -0.4
1,882,937 + Ga0059261_1775 0.44 -0.5
1,882,937 + Ga0059261_1775 0.44 +0.9
1,882,937 + Ga0059261_1775 0.44 +0.1
1,882,937 + Ga0059261_1775 0.44 -0.4
1,882,937 + Ga0059261_1775 0.44 +0.0
1,882,938 - Ga0059261_1775 0.44 +0.6
1,882,938 - Ga0059261_1775 0.44 -0.4
1,882,938 - Ga0059261_1775 0.44 -0.6
1,882,957 + Ga0059261_1775 0.46 -0.3
1,882,958 - Ga0059261_1775 0.46 -0.0
1,882,958 - Ga0059261_1775 0.46 -0.3

Or see this region's nucleotide sequence