Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1467

Experiment: D-Maltose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1466 and Ga0059261_1467 are separated by 39 nucleotidesGa0059261_1467 and Ga0059261_1468 are separated by 94 nucleotides Ga0059261_1466: Ga0059261_1466 - NADH dehydrogenase, FAD-containing subunit, at 1,549,895 to 1,551,214 _1466 Ga0059261_1467: Ga0059261_1467 - Long-chain acyl-CoA synthetases (AMP-forming), at 1,551,254 to 1,553,053 _1467 Ga0059261_1468: Ga0059261_1468 - dihydroorotate oxidase A (EC 1.3.3.1), at 1,553,148 to 1,554,140 _1468 Position (kb) 1551 1552 1553 1554Strain fitness (log2 ratio) -3 -2 -1 0 1at 1550.375 kb on - strand, within Ga0059261_1466at 1550.540 kb on + strand, within Ga0059261_1466at 1550.594 kb on + strand, within Ga0059261_1466at 1550.594 kb on + strand, within Ga0059261_1466at 1550.595 kb on - strand, within Ga0059261_1466at 1550.595 kb on - strand, within Ga0059261_1466at 1550.607 kb on + strand, within Ga0059261_1466at 1550.607 kb on + strand, within Ga0059261_1466at 1550.607 kb on + strandat 1550.607 kb on + strand, within Ga0059261_1466at 1550.607 kb on + strand, within Ga0059261_1466at 1550.607 kb on + strand, within Ga0059261_1466at 1550.607 kb on + strand, within Ga0059261_1466at 1550.608 kb on - strand, within Ga0059261_1466at 1550.608 kb on - strand, within Ga0059261_1466at 1550.608 kb on - strand, within Ga0059261_1466at 1550.608 kb on - strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.610 kb on + strand, within Ga0059261_1466at 1550.611 kb on - strand, within Ga0059261_1466at 1550.611 kb on - strand, within Ga0059261_1466at 1550.611 kb on - strand, within Ga0059261_1466at 1550.611 kb on - strand, within Ga0059261_1466at 1550.611 kb on - strand, within Ga0059261_1466at 1550.611 kb on - strand, within Ga0059261_1466at 1550.865 kb on + strand, within Ga0059261_1466at 1550.865 kb on + strand, within Ga0059261_1466at 1550.866 kb on - strandat 1550.866 kb on - strand, within Ga0059261_1466at 1550.866 kb on - strand, within Ga0059261_1466at 1550.871 kb on + strandat 1551.079 kb on + strand, within Ga0059261_1466at 1551.079 kb on + strand, within Ga0059261_1466at 1551.079 kb on + strand, within Ga0059261_1466at 1551.079 kb on + strand, within Ga0059261_1466at 1551.080 kb on - strand, within Ga0059261_1466at 1551.080 kb on - strand, within Ga0059261_1466at 1551.080 kb on - strand, within Ga0059261_1466at 1551.080 kb on - strand, within Ga0059261_1466at 1551.080 kb on - strand, within Ga0059261_1466at 1551.080 kb on - strand, within Ga0059261_1466at 1551.085 kb on + strandat 1551.085 kb on + strandat 1551.086 kb on - strandat 1551.086 kb on - strandat 1551.204 kb on - strandat 1551.204 kb on - strandat 1551.264 kb on + strandat 1551.264 kb on + strandat 1551.264 kb on + strandat 1551.265 kb on - strandat 1551.265 kb on - strandat 1551.288 kb on + strandat 1551.288 kb on + strandat 1551.288 kb on + strandat 1551.288 kb on + strandat 1551.289 kb on - strandat 1551.289 kb on - strandat 1551.289 kb on - strandat 1551.549 kb on + strand, within Ga0059261_1467at 1551.549 kb on + strand, within Ga0059261_1467at 1551.549 kb on + strand, within Ga0059261_1467at 1551.549 kb on + strand, within Ga0059261_1467at 1551.550 kb on - strand, within Ga0059261_1467at 1551.550 kb on - strand, within Ga0059261_1467at 1551.550 kb on - strand, within Ga0059261_1467at 1551.550 kb on - strand, within Ga0059261_1467at 1551.550 kb on - strand, within Ga0059261_1467at 1551.550 kb on - strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.146 kb on + strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.147 kb on - strand, within Ga0059261_1467at 1552.284 kb on + strand, within Ga0059261_1467at 1552.284 kb on + strand, within Ga0059261_1467at 1552.285 kb on - strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.287 kb on + strand, within Ga0059261_1467at 1552.288 kb on - strand, within Ga0059261_1467at 1552.288 kb on - strand, within Ga0059261_1467at 1552.288 kb on - strand, within Ga0059261_1467at 1552.330 kb on + strand, within Ga0059261_1467at 1552.330 kb on + strand, within Ga0059261_1467at 1552.338 kb on + strand, within Ga0059261_1467at 1552.338 kb on + strand, within Ga0059261_1467at 1552.339 kb on - strand, within Ga0059261_1467at 1552.339 kb on - strand, within Ga0059261_1467at 1552.339 kb on - strand, within Ga0059261_1467at 1552.339 kb on - strand, within Ga0059261_1467at 1552.339 kb on - strand, within Ga0059261_1467at 1552.488 kb on + strand, within Ga0059261_1467at 1552.488 kb on + strand, within Ga0059261_1467at 1552.489 kb on - strand, within Ga0059261_1467at 1552.489 kb on - strand, within Ga0059261_1467at 1552.489 kb on - strand, within Ga0059261_1467at 1552.489 kb on - strand, within Ga0059261_1467at 1552.489 kb on - strand, within Ga0059261_1467at 1552.489 kb on - strand, within Ga0059261_1467at 1552.590 kb on + strand, within Ga0059261_1467at 1552.591 kb on - strand, within Ga0059261_1467at 1552.591 kb on - strand, within Ga0059261_1467at 1552.591 kb on - strand, within Ga0059261_1467at 1552.591 kb on - strand, within Ga0059261_1467at 1552.642 kb on + strand, within Ga0059261_1467at 1552.642 kb on + strand, within Ga0059261_1467at 1552.642 kb on + strand, within Ga0059261_1467at 1552.642 kb on + strand, within Ga0059261_1467at 1552.643 kb on - strand, within Ga0059261_1467at 1552.643 kb on - strand, within Ga0059261_1467at 1552.643 kb on - strand, within Ga0059261_1467at 1552.643 kb on - strand, within Ga0059261_1467at 1552.643 kb on - strand, within Ga0059261_1467at 1552.643 kb on - strand, within Ga0059261_1467at 1552.765 kb on + strand, within Ga0059261_1467at 1552.776 kb on + strand, within Ga0059261_1467at 1552.776 kb on + strand, within Ga0059261_1467at 1552.776 kb on + strand, within Ga0059261_1467at 1552.777 kb on - strand, within Ga0059261_1467at 1552.777 kb on - strand, within Ga0059261_1467at 1553.021 kb on + strandat 1553.021 kb on + strandat 1553.021 kb on + strandat 1553.022 kb on - strandat 1553.022 kb on - strandat 1553.022 kb on - strandat 1553.112 kb on - strandat 1553.112 kb on - strandat 1553.112 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Maltose (C)
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1,550,375 - Ga0059261_1466 0.36 -0.2
1,550,540 + Ga0059261_1466 0.49 -1.1
1,550,594 + Ga0059261_1466 0.53 -0.6
1,550,594 + Ga0059261_1466 0.53 -0.2
1,550,595 - Ga0059261_1466 0.53 +0.3
1,550,595 - Ga0059261_1466 0.53 -0.5
1,550,607 + Ga0059261_1466 0.54 +0.3
1,550,607 + Ga0059261_1466 0.54 -1.7
1,550,607 + -1.5
1,550,607 + Ga0059261_1466 0.54 +0.0
1,550,607 + Ga0059261_1466 0.54 -0.5
1,550,607 + Ga0059261_1466 0.54 -0.4
1,550,607 + Ga0059261_1466 0.54 -0.8
1,550,608 - Ga0059261_1466 0.54 +0.1
1,550,608 - Ga0059261_1466 0.54 -0.7
1,550,608 - Ga0059261_1466 0.54 +0.3
1,550,608 - Ga0059261_1466 0.54 -0.5
1,550,610 + Ga0059261_1466 0.54 -0.1
1,550,610 + Ga0059261_1466 0.54 +0.1
1,550,610 + Ga0059261_1466 0.54 +1.0
1,550,610 + Ga0059261_1466 0.54 -0.0
1,550,610 + Ga0059261_1466 0.54 -0.3
1,550,610 + Ga0059261_1466 0.54 -1.3
1,550,610 + Ga0059261_1466 0.54 +0.2
1,550,610 + Ga0059261_1466 0.54 +0.2
1,550,610 + Ga0059261_1466 0.54 -0.1
1,550,610 + Ga0059261_1466 0.54 -0.5
1,550,611 - Ga0059261_1466 0.54 +0.2
1,550,611 - Ga0059261_1466 0.54 -0.3
1,550,611 - Ga0059261_1466 0.54 -0.7
1,550,611 - Ga0059261_1466 0.54 -0.4
1,550,611 - Ga0059261_1466 0.54 +0.2
1,550,611 - Ga0059261_1466 0.54 +0.3
1,550,865 + Ga0059261_1466 0.73 -1.0
1,550,865 + Ga0059261_1466 0.73 +0.3
1,550,866 - +0.6
1,550,866 - Ga0059261_1466 0.74 +0.6
1,550,866 - Ga0059261_1466 0.74 +0.8
1,550,871 + +1.0
1,551,079 + Ga0059261_1466 0.90 +0.5
1,551,079 + Ga0059261_1466 0.90 -0.0
1,551,079 + Ga0059261_1466 0.90 -0.2
1,551,079 + Ga0059261_1466 0.90 -0.1
1,551,080 - Ga0059261_1466 0.90 -0.3
1,551,080 - Ga0059261_1466 0.90 +0.3
1,551,080 - Ga0059261_1466 0.90 -0.4
1,551,080 - Ga0059261_1466 0.90 -0.3
1,551,080 - Ga0059261_1466 0.90 -0.1
1,551,080 - Ga0059261_1466 0.90 +0.2
1,551,085 + +0.6
1,551,085 + -0.3
1,551,086 - +0.6
1,551,086 - -0.5
1,551,204 - +0.5
1,551,204 - -0.4
1,551,264 + -0.2
1,551,264 + +0.4
1,551,264 + -0.0
1,551,265 - -0.0
1,551,265 - -0.2
1,551,288 + -0.9
1,551,288 + -1.9
1,551,288 + -0.3
1,551,288 + -1.2
1,551,289 - -1.6
1,551,289 - -1.6
1,551,289 - -1.0
1,551,549 + Ga0059261_1467 0.16 +0.3
1,551,549 + Ga0059261_1467 0.16 -1.9
1,551,549 + Ga0059261_1467 0.16 -1.1
1,551,549 + Ga0059261_1467 0.16 -2.4
1,551,550 - Ga0059261_1467 0.16 -2.1
1,551,550 - Ga0059261_1467 0.16 -2.1
1,551,550 - Ga0059261_1467 0.16 -1.3
1,551,550 - Ga0059261_1467 0.16 -0.8
1,551,550 - Ga0059261_1467 0.16 -0.1
1,551,550 - Ga0059261_1467 0.16 -0.8
1,552,146 + Ga0059261_1467 0.50 -0.3
1,552,146 + Ga0059261_1467 0.50 -1.1
1,552,146 + Ga0059261_1467 0.50 -3.1
1,552,146 + Ga0059261_1467 0.50 -0.2
1,552,146 + Ga0059261_1467 0.50 -1.4
1,552,146 + Ga0059261_1467 0.50 -3.0
1,552,146 + Ga0059261_1467 0.50 -0.0
1,552,146 + Ga0059261_1467 0.50 -1.3
1,552,146 + Ga0059261_1467 0.50 -1.2
1,552,146 + Ga0059261_1467 0.50 -0.9
1,552,147 - Ga0059261_1467 0.50 +0.3
1,552,147 - Ga0059261_1467 0.50 -0.1
1,552,147 - Ga0059261_1467 0.50 -0.6
1,552,147 - Ga0059261_1467 0.50 -1.2
1,552,147 - Ga0059261_1467 0.50 -1.2
1,552,147 - Ga0059261_1467 0.50 -1.5
1,552,147 - Ga0059261_1467 0.50 -0.9
1,552,147 - Ga0059261_1467 0.50 -1.1
1,552,147 - Ga0059261_1467 0.50 -0.8
1,552,147 - Ga0059261_1467 0.50 -0.5
1,552,147 - Ga0059261_1467 0.50 -0.8
1,552,147 - Ga0059261_1467 0.50 -1.2
1,552,284 + Ga0059261_1467 0.57 -0.7
1,552,284 + Ga0059261_1467 0.57 -0.7
1,552,285 - Ga0059261_1467 0.57 -1.6
1,552,287 + Ga0059261_1467 0.57 -1.5
1,552,287 + Ga0059261_1467 0.57 -2.0
1,552,287 + Ga0059261_1467 0.57 -1.0
1,552,287 + Ga0059261_1467 0.57 -0.7
1,552,287 + Ga0059261_1467 0.57 -1.0
1,552,287 + Ga0059261_1467 0.57 -2.4
1,552,287 + Ga0059261_1467 0.57 -1.5
1,552,287 + Ga0059261_1467 0.57 +0.0
1,552,287 + Ga0059261_1467 0.57 -0.0
1,552,287 + Ga0059261_1467 0.57 +0.3
1,552,287 + Ga0059261_1467 0.57 -1.0
1,552,288 - Ga0059261_1467 0.57 -1.3
1,552,288 - Ga0059261_1467 0.57 -1.0
1,552,288 - Ga0059261_1467 0.57 -0.5
1,552,330 + Ga0059261_1467 0.60 +1.3
1,552,330 + Ga0059261_1467 0.60 -1.4
1,552,338 + Ga0059261_1467 0.60 -1.3
1,552,338 + Ga0059261_1467 0.60 -1.5
1,552,339 - Ga0059261_1467 0.60 -0.3
1,552,339 - Ga0059261_1467 0.60 -0.0
1,552,339 - Ga0059261_1467 0.60 -1.1
1,552,339 - Ga0059261_1467 0.60 -1.0
1,552,339 - Ga0059261_1467 0.60 -2.5
1,552,488 + Ga0059261_1467 0.69 -0.8
1,552,488 + Ga0059261_1467 0.69 -0.4
1,552,489 - Ga0059261_1467 0.69 -0.7
1,552,489 - Ga0059261_1467 0.69 -1.0
1,552,489 - Ga0059261_1467 0.69 -0.9
1,552,489 - Ga0059261_1467 0.69 +0.3
1,552,489 - Ga0059261_1467 0.69 -0.9
1,552,489 - Ga0059261_1467 0.69 -0.4
1,552,590 + Ga0059261_1467 0.74 -2.2
1,552,591 - Ga0059261_1467 0.74 -1.3
1,552,591 - Ga0059261_1467 0.74 -1.8
1,552,591 - Ga0059261_1467 0.74 -0.8
1,552,591 - Ga0059261_1467 0.74 -0.7
1,552,642 + Ga0059261_1467 0.77 -0.7
1,552,642 + Ga0059261_1467 0.77 -0.8
1,552,642 + Ga0059261_1467 0.77 -0.5
1,552,642 + Ga0059261_1467 0.77 -1.9
1,552,643 - Ga0059261_1467 0.77 -0.5
1,552,643 - Ga0059261_1467 0.77 -1.0
1,552,643 - Ga0059261_1467 0.77 -1.4
1,552,643 - Ga0059261_1467 0.77 -1.3
1,552,643 - Ga0059261_1467 0.77 -1.4
1,552,643 - Ga0059261_1467 0.77 -0.9
1,552,765 + Ga0059261_1467 0.84 -0.8
1,552,776 + Ga0059261_1467 0.85 -1.0
1,552,776 + Ga0059261_1467 0.85 -1.3
1,552,776 + Ga0059261_1467 0.85 -1.0
1,552,777 - Ga0059261_1467 0.85 -1.8
1,552,777 - Ga0059261_1467 0.85 -0.9
1,553,021 + -2.0
1,553,021 + -1.2
1,553,021 + -0.0
1,553,022 - -0.5
1,553,022 - -1.3
1,553,022 - -0.5
1,553,112 - -1.5
1,553,112 - -0.8
1,553,112 - -0.3

Or see this region's nucleotide sequence