Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03936

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00766 and CCNA_00767 are separated by 37 nucleotidesCCNA_00767 and CCNA_03936 are separated by 284 nucleotidesCCNA_03936 and CCNA_00768 overlap by 65 nucleotidesCCNA_00768 and CCNA_00769 overlap by 4 nucleotidesCCNA_00769 and CCNA_00770 are separated by 83 nucleotides CCNA_00766: CCNA_00766 - cobalamin adenosyltransferase family protein, at 823,602 to 824,180 _00766 CCNA_00767: CCNA_00767 - hypothetical protein, at 824,218 to 824,421 _00767 CCNA_03936: CCNA_03936 - hypothetical protein, at 824,706 to 824,840 _03936 CCNA_00768: CCNA_00768 - hypothetical protein, at 824,776 to 825,000 _00768 CCNA_00769: CCNA_00769 - TetR family transcriptional regulator, at 824,997 to 825,644 _00769 CCNA_00770: CCNA_00770 - TetR family transcriptional regulator, at 825,728 to 826,336 _00770 Position (kb) 824 825Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 823.743 kb on - strand, within CCNA_00766at 823.743 kb on - strand, within CCNA_00766at 823.746 kb on + strand, within CCNA_00766at 823.754 kb on - strand, within CCNA_00766at 823.754 kb on - strand, within CCNA_00766at 823.770 kb on + strand, within CCNA_00766at 823.778 kb on - strand, within CCNA_00766at 823.790 kb on + strand, within CCNA_00766at 823.791 kb on + strand, within CCNA_00766at 823.791 kb on + strand, within CCNA_00766at 823.804 kb on - strand, within CCNA_00766at 823.824 kb on - strand, within CCNA_00766at 823.831 kb on + strand, within CCNA_00766at 823.836 kb on + strand, within CCNA_00766at 823.841 kb on + strand, within CCNA_00766at 823.844 kb on - strand, within CCNA_00766at 823.863 kb on - strand, within CCNA_00766at 823.904 kb on - strand, within CCNA_00766at 823.935 kb on - strand, within CCNA_00766at 823.935 kb on - strand, within CCNA_00766at 823.940 kb on + strand, within CCNA_00766at 823.945 kb on + strand, within CCNA_00766at 823.948 kb on - strand, within CCNA_00766at 823.948 kb on - strand, within CCNA_00766at 823.948 kb on - strand, within CCNA_00766at 823.950 kb on + strand, within CCNA_00766at 823.953 kb on - strand, within CCNA_00766at 823.953 kb on - strand, within CCNA_00766at 823.953 kb on - strand, within CCNA_00766at 823.967 kb on + strand, within CCNA_00766at 823.967 kb on + strand, within CCNA_00766at 823.967 kb on + strand, within CCNA_00766at 823.967 kb on + strand, within CCNA_00766at 823.975 kb on - strand, within CCNA_00766at 823.975 kb on - strand, within CCNA_00766at 824.009 kb on + strand, within CCNA_00766at 824.028 kb on + strand, within CCNA_00766at 824.037 kb on + strand, within CCNA_00766at 824.053 kb on + strand, within CCNA_00766at 824.053 kb on + strand, within CCNA_00766at 824.053 kb on + strand, within CCNA_00766at 824.053 kb on + strand, within CCNA_00766at 824.091 kb on + strand, within CCNA_00766at 824.100 kb on + strand, within CCNA_00766at 824.111 kb on - strand, within CCNA_00766at 824.163 kb on - strandat 824.223 kb on - strandat 824.267 kb on + strand, within CCNA_00767at 824.309 kb on + strand, within CCNA_00767at 824.309 kb on + strand, within CCNA_00767at 824.317 kb on - strand, within CCNA_00767at 824.317 kb on - strand, within CCNA_00767at 824.368 kb on + strand, within CCNA_00767at 824.376 kb on - strand, within CCNA_00767at 824.410 kb on + strandat 824.412 kb on + strandat 824.412 kb on + strandat 824.420 kb on - strandat 824.420 kb on - strandat 824.420 kb on - strandat 824.424 kb on + strandat 824.429 kb on + strandat 824.429 kb on + strandat 824.429 kb on + strandat 824.429 kb on + strandat 824.437 kb on - strandat 824.437 kb on - strandat 824.442 kb on - strandat 824.464 kb on - strandat 824.518 kb on + strandat 824.578 kb on + strandat 824.607 kb on + strandat 824.622 kb on - strandat 824.732 kb on + strand, within CCNA_03936at 824.735 kb on - strand, within CCNA_03936at 824.764 kb on + strand, within CCNA_03936at 824.764 kb on + strand, within CCNA_03936at 824.772 kb on + strand, within CCNA_03936at 824.780 kb on - strandat 824.808 kb on + strandat 824.808 kb on + strandat 824.816 kb on - strandat 824.816 kb on - strandat 824.853 kb on + strand, within CCNA_00768at 824.873 kb on - strand, within CCNA_00768at 824.904 kb on - strand, within CCNA_00768at 824.925 kb on - strand, within CCNA_00768at 824.925 kb on - strand, within CCNA_00768at 824.944 kb on + strand, within CCNA_00768at 824.950 kb on - strand, within CCNA_00768at 824.950 kb on - strand, within CCNA_00768at 824.980 kb on + strandat 825.001 kb on + strandat 825.016 kb on + strandat 825.016 kb on + strandat 825.024 kb on - strandat 825.030 kb on + strandat 825.048 kb on - strandat 825.065 kb on + strand, within CCNA_00769at 825.072 kb on - strand, within CCNA_00769at 825.127 kb on + strand, within CCNA_00769at 825.127 kb on + strand, within CCNA_00769at 825.135 kb on - strand, within CCNA_00769at 825.186 kb on + strand, within CCNA_00769at 825.208 kb on + strand, within CCNA_00769at 825.208 kb on + strand, within CCNA_00769at 825.208 kb on + strand, within CCNA_00769at 825.216 kb on - strand, within CCNA_00769at 825.226 kb on - strand, within CCNA_00769at 825.266 kb on + strand, within CCNA_00769at 825.270 kb on - strand, within CCNA_00769at 825.291 kb on - strand, within CCNA_00769at 825.317 kb on + strand, within CCNA_00769at 825.326 kb on + strand, within CCNA_00769at 825.330 kb on - strand, within CCNA_00769at 825.335 kb on - strand, within CCNA_00769at 825.335 kb on - strand, within CCNA_00769at 825.335 kb on - strand, within CCNA_00769at 825.359 kb on + strand, within CCNA_00769at 825.359 kb on + strand, within CCNA_00769at 825.380 kb on + strand, within CCNA_00769at 825.386 kb on - strand, within CCNA_00769at 825.391 kb on + strand, within CCNA_00769at 825.436 kb on + strand, within CCNA_00769at 825.436 kb on + strand, within CCNA_00769at 825.436 kb on + strand, within CCNA_00769at 825.444 kb on - strand, within CCNA_00769at 825.464 kb on - strand, within CCNA_00769at 825.464 kb on - strand, within CCNA_00769at 825.517 kb on - strand, within CCNA_00769at 825.561 kb on + strand, within CCNA_00769at 825.569 kb on - strand, within CCNA_00769at 825.586 kb on - strandat 825.640 kb on + strandat 825.661 kb on + strandat 825.671 kb on - strandat 825.688 kb on - strandat 825.689 kb on - strandat 825.689 kb on - strandat 825.689 kb on - strandat 825.718 kb on - strandat 825.728 kb on - strandat 825.791 kb on - strand, within CCNA_00770at 825.793 kb on + strand, within CCNA_00770at 825.801 kb on - strand, within CCNA_00770at 825.801 kb on - strand, within CCNA_00770at 825.801 kb on - strand, within CCNA_00770at 825.801 kb on - strand, within CCNA_00770at 825.807 kb on + strand, within CCNA_00770at 825.807 kb on + strand, within CCNA_00770at 825.815 kb on - strand, within CCNA_00770

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Doxycycline hyclate 0.0001 mg/ml
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823,743 - CCNA_00766 0.24 +1.5
823,743 - CCNA_00766 0.24 +1.9
823,746 + CCNA_00766 0.25 +0.8
823,754 - CCNA_00766 0.26 +1.4
823,754 - CCNA_00766 0.26 +1.4
823,770 + CCNA_00766 0.29 +0.2
823,778 - CCNA_00766 0.30 +2.0
823,790 + CCNA_00766 0.32 +1.4
823,791 + CCNA_00766 0.33 +1.6
823,791 + CCNA_00766 0.33 +2.8
823,804 - CCNA_00766 0.35 +0.8
823,824 - CCNA_00766 0.38 +1.5
823,831 + CCNA_00766 0.40 -0.3
823,836 + CCNA_00766 0.40 +1.0
823,841 + CCNA_00766 0.41 +1.5
823,844 - CCNA_00766 0.42 +0.1
823,863 - CCNA_00766 0.45 +2.0
823,904 - CCNA_00766 0.52 -0.1
823,935 - CCNA_00766 0.58 +1.7
823,935 - CCNA_00766 0.58 +1.2
823,940 + CCNA_00766 0.58 +0.9
823,945 + CCNA_00766 0.59 +1.9
823,948 - CCNA_00766 0.60 +1.0
823,948 - CCNA_00766 0.60 +1.6
823,948 - CCNA_00766 0.60 +2.0
823,950 + CCNA_00766 0.60 +1.2
823,953 - CCNA_00766 0.61 +1.2
823,953 - CCNA_00766 0.61 +1.6
823,953 - CCNA_00766 0.61 +2.1
823,967 + CCNA_00766 0.63 +0.9
823,967 + CCNA_00766 0.63 -0.7
823,967 + CCNA_00766 0.63 +0.4
823,967 + CCNA_00766 0.63 -0.0
823,975 - CCNA_00766 0.64 +1.2
823,975 - CCNA_00766 0.64 +1.9
824,009 + CCNA_00766 0.70 +1.8
824,028 + CCNA_00766 0.74 +1.7
824,037 + CCNA_00766 0.75 +1.6
824,053 + CCNA_00766 0.78 +0.6
824,053 + CCNA_00766 0.78 +1.0
824,053 + CCNA_00766 0.78 +1.6
824,053 + CCNA_00766 0.78 -0.1
824,091 + CCNA_00766 0.84 +0.2
824,100 + CCNA_00766 0.86 -0.5
824,111 - CCNA_00766 0.88 +0.1
824,163 - -0.2
824,223 - -0.2
824,267 + CCNA_00767 0.24 -1.0
824,309 + CCNA_00767 0.45 +1.1
824,309 + CCNA_00767 0.45 -0.4
824,317 - CCNA_00767 0.49 +0.9
824,317 - CCNA_00767 0.49 -1.5
824,368 + CCNA_00767 0.74 -0.6
824,376 - CCNA_00767 0.77 -0.9
824,410 + -0.1
824,412 + -0.7
824,412 + +0.3
824,420 - +0.4
824,420 - +0.6
824,420 - +1.2
824,424 + +1.4
824,429 + +0.0
824,429 + +0.3
824,429 + -0.2
824,429 + +0.1
824,437 - -0.4
824,437 - +0.1
824,442 - +0.6
824,464 - +0.5
824,518 + -1.4
824,578 + -0.3
824,607 + -0.7
824,622 - -1.1
824,732 + CCNA_03936 0.19 +4.3
824,735 - CCNA_03936 0.21 +2.5
824,764 + CCNA_03936 0.43 +2.8
824,764 + CCNA_03936 0.43 +2.6
824,772 + CCNA_03936 0.49 +3.9
824,780 - +4.1
824,808 + +4.8
824,808 + +2.5
824,816 - +3.3
824,816 - +1.7
824,853 + CCNA_00768 0.34 +2.9
824,873 - CCNA_00768 0.43 +3.3
824,904 - CCNA_00768 0.57 +3.5
824,925 - CCNA_00768 0.66 +4.9
824,925 - CCNA_00768 0.66 +3.8
824,944 + CCNA_00768 0.75 +5.7
824,950 - CCNA_00768 0.77 +1.9
824,950 - CCNA_00768 0.77 +5.3
824,980 + +4.2
825,001 + +5.4
825,016 + +7.1
825,016 + +7.2
825,024 - +4.4
825,030 + +7.3
825,048 - +4.1
825,065 + CCNA_00769 0.10 +7.6
825,072 - CCNA_00769 0.12 +4.3
825,127 + CCNA_00769 0.20 +7.6
825,127 + CCNA_00769 0.20 +7.6
825,135 - CCNA_00769 0.21 +5.1
825,186 + CCNA_00769 0.29 +8.0
825,208 + CCNA_00769 0.33 +7.4
825,208 + CCNA_00769 0.33 +7.5
825,208 + CCNA_00769 0.33 +7.6
825,216 - CCNA_00769 0.34 +5.8
825,226 - CCNA_00769 0.35 +4.9
825,266 + CCNA_00769 0.42 +7.9
825,270 - CCNA_00769 0.42 +5.0
825,291 - CCNA_00769 0.45 +3.1
825,317 + CCNA_00769 0.49 +7.5
825,326 + CCNA_00769 0.51 +7.9
825,330 - CCNA_00769 0.51 +4.9
825,335 - CCNA_00769 0.52 +4.7
825,335 - CCNA_00769 0.52 +4.5
825,335 - CCNA_00769 0.52 +3.8
825,359 + CCNA_00769 0.56 +8.1
825,359 + CCNA_00769 0.56 +7.7
825,380 + CCNA_00769 0.59 +8.3
825,386 - CCNA_00769 0.60 +4.8
825,391 + CCNA_00769 0.61 +7.9
825,436 + CCNA_00769 0.68 +7.7
825,436 + CCNA_00769 0.68 +7.8
825,436 + CCNA_00769 0.68 +8.2
825,444 - CCNA_00769 0.69 +5.0
825,464 - CCNA_00769 0.72 +5.9
825,464 - CCNA_00769 0.72 +6.0
825,517 - CCNA_00769 0.80 +5.0
825,561 + CCNA_00769 0.87 +9.3
825,569 - CCNA_00769 0.88 +3.9
825,586 - +5.0
825,640 + +1.1
825,661 + +1.5
825,671 - -1.0
825,688 - +0.5
825,689 - +0.7
825,689 - +0.8
825,689 - -1.8
825,718 - +0.1
825,728 - -1.5
825,791 - CCNA_00770 0.10 +0.0
825,793 + CCNA_00770 0.11 +1.6
825,801 - CCNA_00770 0.12 -0.1
825,801 - CCNA_00770 0.12 -0.9
825,801 - CCNA_00770 0.12 +0.3
825,801 - CCNA_00770 0.12 -0.0
825,807 + CCNA_00770 0.13 +0.4
825,807 + CCNA_00770 0.13 +2.2
825,815 - CCNA_00770 0.14 -0.7

Or see this region's nucleotide sequence