Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03748

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
3,917,183	+				+0.8
3,917,194	+				-0.4
3,917,194	+				+2.2
3,917,195	+		CCNA_03747	0.10	+2.9
3,917,216	+		CCNA_03747	0.12	+3.4
3,917,227	+		CCNA_03747	0.13	-0.1
3,917,235	-		CCNA_03747	0.14	+2.7
3,917,235	-		CCNA_03747	0.14	+2.9
3,917,242	+		CCNA_03747	0.15	-0.8
3,917,250	-		CCNA_03747	0.15	+1.7
3,917,250	-		CCNA_03747	0.15	+1.4
3,917,291	+		CCNA_03747	0.19	+1.2
3,917,310	+		CCNA_03747	0.21	+0.5
3,917,337	-		CCNA_03747	0.24	+2.3
3,917,381	+		CCNA_03747	0.28	+0.2
3,917,381	+		CCNA_03747	0.28	+0.2
3,917,404	+		CCNA_03747	0.30	+1.6
3,917,440	+		CCNA_03747	0.34	+1.4
3,917,443	-		CCNA_03747	0.34	+2.4
3,917,459	+		CCNA_03747	0.36	+4.4
3,917,459	+		CCNA_03747	0.36	+0.2
3,917,459	+		CCNA_03747	0.36	-1.0
3,917,467	-		CCNA_03747	0.37	+4.6
3,917,467	-		CCNA_03747	0.37	+0.2
3,917,467	-		CCNA_03747	0.37	+1.3
3,917,467	-		CCNA_03747	0.37	+2.3
3,917,467	-		CCNA_03747	0.37	+1.5
3,917,471	+		CCNA_03747	0.37	-0.4
3,917,473	-		CCNA_03747	0.37	+1.1
3,917,479	-		CCNA_03747	0.38	+2.4
3,917,492	+		CCNA_03747	0.39	+1.4
3,917,515	-		CCNA_03747	0.41	-0.0
3,917,520	-		CCNA_03747	0.42	+1.3
3,917,550	+		CCNA_03747	0.45	-0.2
3,917,573	+		CCNA_03747	0.47	+1.1
3,917,585	-		CCNA_03747	0.48	-0.3
3,917,653	+		CCNA_03747	0.55	+1.6
3,917,661	-		CCNA_03747	0.55	+0.9
3,917,679	-		CCNA_03747	0.57	+2.2
3,917,686	+				+1.8
3,917,734	+		CCNA_03747	0.63	+1.4
3,917,745	+		CCNA_03747	0.64	-0.3
3,917,825	+		CCNA_03747	0.71	+0.1
3,917,830	+		CCNA_03747	0.72	-0.6
3,917,830	+		CCNA_03747	0.72	-0.3
3,917,835	+		CCNA_03747	0.72	+0.1
3,917,849	+		CCNA_03747	0.74	+1.1
3,917,890	+		CCNA_03747	0.78	+1.5
3,917,898	-		CCNA_03747	0.79	+0.4
3,917,898	-		CCNA_03747	0.79	-0.2
3,917,898	-		CCNA_03747	0.79	+0.8
3,917,898	-		CCNA_03747	0.79	+1.2
3,917,898	-		CCNA_03747	0.79	+0.2
3,917,963	+		CCNA_03747	0.85	+1.5
3,918,012	-		CCNA_03747	0.90	+2.4
3,918,025	-				+2.9
3,918,030	-				+0.5
3,918,033	+				+1.7
3,918,033	+				+0.4
3,918,033	+				-0.5
3,918,039	+				+1.3
3,918,059	-				+1.8
3,918,062	-				-1.8
3,918,063	-				+0.8
3,918,072	+				+1.0
3,918,080	-				+1.4
3,918,097	-				-0.9
3,918,137	+				-1.3
3,918,152	-				+2.2
3,918,184	-				+1.8
3,918,185	-				+2.6
3,918,215	-		CCNA_03748	0.11	+4.0
3,918,289	-		CCNA_03748	0.24	+1.9
3,918,291	+		CCNA_03748	0.25	+1.9
3,918,349	-		CCNA_03748	0.35	+2.6
3,918,363	+		CCNA_03748	0.37	+2.1
3,918,363	+		CCNA_03748	0.37	+1.7
3,918,363	+		CCNA_03748	0.37	+2.2
3,918,370	+		CCNA_03748	0.39	+2.7
3,918,371	-		CCNA_03748	0.39	+4.1
3,918,378	-		CCNA_03748	0.40	+1.2
3,918,383	-		CCNA_03748	0.41	+2.2
3,918,424	+		CCNA_03748	0.48	+1.7
3,918,452	+		CCNA_03748	0.53	+1.7
3,918,459	+		CCNA_03748	0.55	+2.1
3,918,493	+		CCNA_03748	0.61	+2.7
3,918,510	+		CCNA_03748	0.64	+1.8
3,918,546	+		CCNA_03748	0.70	+2.6
3,918,549	-		CCNA_03748	0.71	+1.6
3,918,561	+		CCNA_03748	0.73	+2.2
3,918,578	-		CCNA_03748	0.76	+0.4
3,918,579	-		CCNA_03748	0.76	+2.0
3,918,579	-		CCNA_03748	0.76	+1.0
3,918,585	-		CCNA_03748	0.77	+2.3
3,918,705	-				-1.4
3,918,726	-				-1.4
3,918,733	+				-0.6
3,918,733	+				-2.1
3,918,734	-				-0.2
3,918,741	-				-1.0
3,918,761	+				-0.3
3,918,779	-				-2.5
3,918,779	-				-1.6
3,918,812	+				+0.4
3,918,820	-				-0.0
3,918,825	+				+0.4
3,918,833	-				-2.2
3,918,853	+				-0.9
3,918,853	+				-0.0
3,918,861	-				-2.1
3,918,869	-				-1.8
3,918,873	+				-0.4
3,918,894	+				-2.3
3,918,894	+				-1.2
3,918,902	-				+1.3
3,918,902	-				-0.2
3,918,921	+				-0.3
3,918,929	-		CCNA_03749	0.11	-0.7
3,918,931	-		CCNA_03749	0.11	-0.7
3,918,947	-		CCNA_03749	0.13	+1.1
3,918,975	+		CCNA_03749	0.16	-0.9
3,919,038	+		CCNA_03749	0.23	+1.2
3,919,146	+		CCNA_03749	0.35	+0.6
3,919,168	-		CCNA_03749	0.37	-1.5
3,919,175	+		CCNA_03749	0.38	-0.3
3,919,175	+		CCNA_03749	0.38	+0.5
3,919,175	+		CCNA_03749	0.38	+0.5
3,919,175	+		CCNA_03749	0.38	-0.5
3,919,175	+		CCNA_03749	0.38	-0.1
3,919,175	+		CCNA_03749	0.38	-1.2
3,919,178	-		CCNA_03749	0.38	+0.7
3,919,182	+		CCNA_03749	0.39	+0.5
3,919,183	-		CCNA_03749	0.39	-3.1
3,919,183	-		CCNA_03749	0.39	+0.1
3,919,183	-		CCNA_03749	0.39	-1.3
3,919,199	-		CCNA_03749	0.41	+0.6
3,919,199	-		CCNA_03749	0.41	+1.2
3,919,230	+		CCNA_03749	0.44	+0.2
3,919,230	+		CCNA_03749	0.44	+0.1
3,919,230	+		CCNA_03749	0.44	-0.3
3,919,230	+		CCNA_03749	0.44	+0.2
3,919,230	+		CCNA_03749	0.44	+0.1
3,919,238	-		CCNA_03749	0.45	-4.1
3,919,251	+		CCNA_03749	0.46	-0.1
3,919,277	+		CCNA_03749	0.49	+0.6
3,919,277	+		CCNA_03749	0.49	-0.4
3,919,277	+		CCNA_03749	0.49	-1.5
3,919,279	-		CCNA_03749	0.49	-0.9
3,919,285	-		CCNA_03749	0.50	-1.0
3,919,285	-		CCNA_03749	0.50	+0.3
3,919,316	+		CCNA_03749	0.53	+0.2
3,919,354	-		CCNA_03749	0.58	-1.0
3,919,374	-		CCNA_03749	0.60	+1.0
3,919,374	-		CCNA_03749	0.60	-1.1
3,919,376	+		CCNA_03749	0.60	+0.0
3,919,376	-		CCNA_03749	0.60	-0.3
3,919,384	-		CCNA_03749	0.61	+0.6
3,919,410	-		CCNA_03749	0.64	-0.3
3,919,410	-		CCNA_03749	0.64	-0.0
3,919,413	+		CCNA_03749	0.64	-0.3
3,919,431	-		CCNA_03749	0.66	-0.3
3,919,431	-		CCNA_03749	0.66	-0.4
3,919,446	-		CCNA_03749	0.68	-0.2
3,919,450	+		CCNA_03749	0.68	-0.0
3,919,450	+		CCNA_03749	0.68	-1.4
3,919,450	+		CCNA_03749	0.68	-0.4
3,919,458	-		CCNA_03749	0.69	+0.0
3,919,458	-		CCNA_03749	0.69	-0.8
3,919,458	-		CCNA_03749	0.69	+0.2
3,919,486	+		CCNA_03749	0.72	-0.2
3,919,505	-		CCNA_03749	0.74	-0.5
3,919,518	+		CCNA_03749	0.76	-1.0
3,919,531	+		CCNA_03749	0.77	-2.7
3,919,539	-		CCNA_03749	0.78	-0.6
3,919,539	-		CCNA_03749	0.78	-0.4
3,919,539	-		CCNA_03749	0.78	-1.5
3,919,581	+		CCNA_03749	0.83	-1.3
3,919,610	+		CCNA_03749	0.86	-0.9
3,919,644	+		CCNA_03749	0.90	-0.2
3,919,644	+		CCNA_03749	0.90	-1.4
3,919,647	-				+0.1
3,919,659	-				+0.2
3,919,679	-				-0.6
3,919,679	-				-0.2
3,919,679	-				+0.0
3,919,701	-				-0.0