Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03419

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
3,584,337	+		CCNA_03417	0.54	-1.0
3,584,337	+		CCNA_03417	0.54	-0.9
3,584,345	-		CCNA_03417	0.55	-0.1
3,584,345	-		CCNA_03417	0.55	-0.8
3,584,345	-		CCNA_03417	0.55	+0.6
3,584,394	-		CCNA_03417	0.60	-0.7
3,584,400	+		CCNA_03417	0.60	+0.4
3,584,408	-		CCNA_03417	0.61	-1.3
3,584,425	-		CCNA_03417	0.63	-0.5
3,584,434	+		CCNA_03417	0.64	-1.1
3,584,444	+		CCNA_03417	0.65	-0.4
3,584,449	+		CCNA_03417	0.66	-1.4
3,584,454	+		CCNA_03417	0.66	-1.4
3,584,455	-		CCNA_03417	0.66	-0.9
3,584,514	+		CCNA_03417	0.73	-1.5
3,584,522	-		CCNA_03417	0.74	-1.1
3,584,603	-		CCNA_03417	0.82	-0.3
3,584,615	+		CCNA_03417	0.84	-0.4
3,584,615	+		CCNA_03417	0.84	-0.2
3,584,618	-		CCNA_03417	0.84	+0.7
3,584,623	-		CCNA_03417	0.85	-0.9
3,584,660	+		CCNA_03417	0.89	-0.4
3,584,668	-		CCNA_03417	0.90	-1.0
3,584,723	-				-0.5
3,584,723	-				-1.5
3,584,723	-				+0.7
3,584,766	+				+0.4
3,584,767	+				-0.4
3,584,768	-				+0.7
3,584,854	-		CCNA_03418	0.18	-1.9
3,584,865	+		CCNA_03418	0.20	-0.5
3,584,873	-		CCNA_03418	0.22	+0.6
3,584,883	+		CCNA_03418	0.24	-0.5
3,584,883	+		CCNA_03418	0.24	+0.2
3,584,891	+		CCNA_03418	0.26	-2.1
3,584,899	+		CCNA_03418	0.28	-2.2
3,584,907	-		CCNA_03418	0.29	-0.9
3,584,925	+		CCNA_03418	0.33	-0.2
3,584,933	-		CCNA_03418	0.35	-0.5
3,584,952	+		CCNA_03418	0.39	-0.8
3,584,980	+		CCNA_03418	0.45	+0.1
3,585,017	-		CCNA_03418	0.53	+0.4
3,585,052	-		CCNA_03418	0.60	-0.3
3,585,063	+		CCNA_03418	0.62	-1.6
3,585,073	+		CCNA_03418	0.64	-0.3
3,585,076	-		CCNA_03418	0.65	+0.4
3,585,113	+		CCNA_03418	0.73	-0.4
3,585,118	+		CCNA_03418	0.74	-1.7
3,585,119	+		CCNA_03418	0.74	-0.4
3,585,119	+		CCNA_03418	0.74	+1.1
3,585,119	+		CCNA_03418	0.74	-0.9
3,585,121	-		CCNA_03418	0.74	-1.2
3,585,127	-		CCNA_03418	0.76	+0.6
3,585,143	-		CCNA_03418	0.79	-0.1
3,585,177	+		CCNA_03418	0.86	-2.0
3,585,187	-		CCNA_03418	0.88	-1.2
3,585,213	+				+1.1
3,585,213	+				+0.3
3,585,213	+				-0.6
3,585,221	-				-0.8
3,585,221	-				+1.0
3,585,221	-				+0.6
3,585,294	+				-0.8
3,585,304	+				-0.4
3,585,305	+				-0.1
3,585,305	+				-0.9
3,585,305	+				-1.5
3,585,313	-				+0.3
3,585,313	-				-1.2
3,585,313	-				-0.5
3,585,328	+				-2.0
3,585,333	+				-1.9
3,585,387	+		CCNA_03419	0.10	+1.0
3,585,402	+		CCNA_03419	0.13	-2.7
3,585,410	-		CCNA_03419	0.15	+0.3
3,585,410	-		CCNA_03419	0.15	-0.9
3,585,419	+		CCNA_03419	0.17	-1.8
3,585,439	-		CCNA_03419	0.21	-0.6
3,585,462	-		CCNA_03419	0.25	-1.0
3,585,501	+		CCNA_03419	0.33	+0.3
3,585,501	+		CCNA_03419	0.33	-2.0
3,585,501	+		CCNA_03419	0.33	+0.7
3,585,533	-		CCNA_03419	0.39	+0.2
3,585,545	-		CCNA_03419	0.42	-0.7
3,585,551	-		CCNA_03419	0.43	-1.4
3,585,580	+		CCNA_03419	0.49	-0.1
3,585,587	+		CCNA_03419	0.50	-0.1
3,585,588	-		CCNA_03419	0.50	-0.0
3,585,600	+		CCNA_03419	0.53	+1.3
3,585,600	+		CCNA_03419	0.53	-0.8
3,585,608	-		CCNA_03419	0.54	+0.6
3,585,632	-		CCNA_03419	0.59	-1.1
3,585,641	+		CCNA_03419	0.61	-2.4
3,585,645	+		CCNA_03419	0.62	-0.7
3,585,647	-		CCNA_03419	0.62	-1.7
3,585,650	+		CCNA_03419	0.63	-1.1
3,585,650	+		CCNA_03419	0.63	-2.3
3,585,650	+		CCNA_03419	0.63	+0.7
3,585,650	+		CCNA_03419	0.63	-1.7
3,585,650	+		CCNA_03419	0.63	+0.2
3,585,658	-		CCNA_03419	0.64	+0.4
3,585,658	-		CCNA_03419	0.64	-0.1
3,585,658	-		CCNA_03419	0.64	-1.1
3,585,658	-		CCNA_03419	0.64	-1.4
3,585,691	+		CCNA_03419	0.71	-0.5
3,585,748	+		CCNA_03419	0.82	-0.2
3,585,761	-		CCNA_03419	0.85	+1.6
3,585,774	+		CCNA_03419	0.87	+0.8
3,585,885	+				+0.7
3,585,885	+				+0.3
3,585,886	+		CCNA_03420	0.10	+1.3
3,585,886	+		CCNA_03420	0.10	+0.3
3,585,886	+		CCNA_03420	0.10	+1.5
3,585,886	+		CCNA_03420	0.10	+1.5
3,585,886	+		CCNA_03420	0.10	+1.4
3,585,900	+		CCNA_03420	0.12	+1.1
3,585,910	+		CCNA_03420	0.14	+1.8
3,585,920	+		CCNA_03420	0.16	+1.3
3,585,920	+		CCNA_03420	0.16	+1.3
3,585,941	-		CCNA_03420	0.19	+0.3
3,585,946	+		CCNA_03420	0.20	+1.2
3,585,966	+		CCNA_03420	0.23	+1.7
3,586,000	+		CCNA_03420	0.29	+0.8
3,586,000	+		CCNA_03420	0.29	+0.0
3,586,008	-		CCNA_03420	0.30	+1.1
3,586,022	+		CCNA_03420	0.33	+1.3
3,586,022	+		CCNA_03420	0.33	+1.1
3,586,033	+		CCNA_03420	0.34	+1.4
3,586,046	+		CCNA_03420	0.37	+1.5
3,586,154	+		CCNA_03420	0.55	+0.1
3,586,154	+		CCNA_03420	0.55	+0.0
3,586,198	+		CCNA_03420	0.62	+1.3
3,586,206	+		CCNA_03420	0.63	+2.4
3,586,234	+		CCNA_03420	0.68	+1.3
3,586,260	+		CCNA_03420	0.72	+0.2
3,586,268	-		CCNA_03420	0.74	+0.8
3,586,278	+		CCNA_03420	0.75	+1.5
3,586,287	-		CCNA_03420	0.77	-0.9
3,586,319	+		CCNA_03420	0.82	+0.5
3,586,371	+				+0.3
3,586,420	+				+0.3
3,586,420	+				+0.8
3,586,420	+				+0.1
3,586,428	-				-0.3
3,586,428	-				+0.5
3,586,461	+				-2.1
3,586,469	-				-0.0
3,586,469	-				+0.4
3,586,469	-				-0.7
3,586,494	+				-0.4
3,586,560	+				+1.3
3,586,585	-				+0.1
3,586,585	-				+0.2
3,586,585	-				+0.2
3,586,595	-				+0.5
3,586,597	+				-1.0
3,586,597	+				-0.1
3,586,605	-				+0.5
3,586,628	+				-0.9
3,586,755	-		CCNA_03421	0.16	+0.2
3,586,764	+		CCNA_03421	0.17	-0.7
3,586,787	-		CCNA_03421	0.18	+0.4
3,586,795	-		CCNA_03421	0.19	+1.7
3,586,813	+		CCNA_03421	0.20	+1.0
3,586,813	+		CCNA_03421	0.20	+0.5
3,586,821	-		CCNA_03421	0.21	-0.4