Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02904

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
3,059,321	+		CCNA_02903	0.29	+1.0
3,059,327	+		CCNA_02903	0.29	+0.6
3,059,327	-		CCNA_02903	0.29	+0.6
3,059,335	-		CCNA_02903	0.30	+1.7
3,059,335	-		CCNA_02903	0.30	-0.5
3,059,335	-		CCNA_02903	0.30	-1.7
3,059,335	-		CCNA_02903	0.30	+0.3
3,059,338	+		CCNA_02903	0.30	-1.6
3,059,371	-		CCNA_02903	0.33	-0.3
3,059,371	-		CCNA_02903	0.33	+1.0
3,059,398	+		CCNA_02903	0.35	-1.2
3,059,398	-		CCNA_02903	0.35	+1.6
3,059,403	-		CCNA_02903	0.36	+1.1
3,059,445	-		CCNA_02903	0.39	+0.9
3,059,469	-		CCNA_02903	0.41	+0.5
3,059,505	-		CCNA_02903	0.44	+0.6
3,059,519	+		CCNA_02903	0.45	-1.9
3,059,541	+		CCNA_02903	0.47	-0.3
3,059,541	-		CCNA_02903	0.47	+0.3
3,059,549	-		CCNA_02903	0.48	-1.5
3,059,549	-		CCNA_02903	0.48	-1.2
3,059,549	-		CCNA_02903	0.48	-1.1
3,059,559	-		CCNA_02903	0.49	+0.1
3,059,559	-		CCNA_02903	0.49	+0.9
3,059,559	-		CCNA_02903	0.49	+0.9
3,059,559	-		CCNA_02903	0.49	-0.1
3,059,559	-		CCNA_02903	0.49	+1.6
3,059,577	+		CCNA_02903	0.50	-1.3
3,059,584	+		CCNA_02903	0.51	-0.2
3,059,590	-		CCNA_02903	0.51	+2.1
3,059,599	-		CCNA_02903	0.52	-1.4
3,059,611	-		CCNA_02903	0.53	+0.0
3,059,611	-		CCNA_02903	0.53	+0.8
3,059,650	+		CCNA_02903	0.56	+0.2
3,059,673	+		CCNA_02903	0.58	-1.3
3,059,676	-		CCNA_02903	0.58	-0.7
3,059,676	-		CCNA_02903	0.58	+0.6
3,059,727	-		CCNA_02903	0.62	-1.1
3,059,739	-		CCNA_02903	0.63	-0.0
3,059,860	-		CCNA_02903	0.73	-0.9
3,059,874	-		CCNA_02903	0.75	+1.1
3,059,879	+		CCNA_02903	0.75	-1.8
3,059,945	+		CCNA_02903	0.80	+0.5
3,059,945	+		CCNA_02903	0.80	+0.5
3,059,952	+		CCNA_02903	0.81	-0.0
3,059,953	-				+2.1
3,059,953	-		CCNA_02903	0.81	-0.4
3,059,953	-		CCNA_02903	0.81	-0.2
3,059,953	-		CCNA_02903	0.81	-1.9
3,059,953	-		CCNA_02903	0.81	-0.7
3,060,006	-		CCNA_02903	0.85	-0.1
3,060,013	-		CCNA_02903	0.86	-0.4
3,060,031	+		CCNA_02903	0.88	-1.2
3,060,031	+		CCNA_02903	0.88	+0.4
3,060,039	+		CCNA_02903	0.88	+1.1
3,060,039	-		CCNA_02903	0.88	-0.6
3,060,039	-		CCNA_02903	0.88	+1.2
3,060,047	-		CCNA_02903	0.89	+1.4
3,060,047	-		CCNA_02903	0.89	-0.8
3,060,072	+				-0.6
3,060,072	+				+0.9
3,060,084	-				+0.1
3,060,103	-				+0.1
3,060,117	+				+1.1
3,060,167	+				-0.9
3,060,185	-				-0.3
3,060,194	-				-0.7
3,060,250	+				+1.8
3,060,291	+				+0.9
3,060,291	+				+1.2
3,060,299	-				+0.4
3,060,299	-				+0.5
3,060,299	-				+0.7
3,060,319	+				+0.9
3,060,361	+				+1.0
3,060,394	+		CCNA_02904	0.11	+0.3
3,060,424	+		CCNA_02904	0.15	+0.9
3,060,432	-		CCNA_02904	0.17	+1.7
3,060,438	+		CCNA_02904	0.17	+1.3
3,060,438	+		CCNA_02904	0.17	+0.8
3,060,438	+		CCNA_02904	0.17	-0.0
3,060,443	+		CCNA_02904	0.18	-0.1
3,060,446	-		CCNA_02904	0.18	-2.2
3,060,446	-		CCNA_02904	0.18	+0.4
3,060,446	-		CCNA_02904	0.18	+0.5
3,060,446	-		CCNA_02904	0.18	-1.1
3,060,534	+		CCNA_02904	0.30	+0.6
3,060,573	+		CCNA_02904	0.35	+0.0
3,060,581	-		CCNA_02904	0.36	-0.7
3,060,581	-		CCNA_02904	0.36	-0.7
3,060,581	-		CCNA_02904	0.36	-2.4
3,060,601	+		CCNA_02904	0.39	+0.1
3,060,615	-		CCNA_02904	0.41	+0.9
3,060,625	+		CCNA_02904	0.42	+1.8
3,060,673	+		CCNA_02904	0.49	+0.0
3,060,731	+		CCNA_02904	0.56	+0.2
3,060,731	+		CCNA_02904	0.56	-1.0
3,060,739	-		CCNA_02904	0.57	-0.2
3,060,739	-		CCNA_02904	0.57	+0.1
3,060,778	+		CCNA_02904	0.63	+0.1
3,060,788	+		CCNA_02904	0.64	+1.8
3,060,827	+		CCNA_02904	0.69	+1.2
3,060,827	+		CCNA_02904	0.69	-0.7
3,060,827	+		CCNA_02904	0.69	+0.9
3,060,827	+		CCNA_02904	0.69	+0.5
3,060,832	+		CCNA_02904	0.70	-0.3
3,060,844	+		CCNA_02904	0.71	+0.2
3,060,869	+		CCNA_02904	0.75	-0.2
3,060,894	+		CCNA_02904	0.78	+0.4
3,060,902	-		CCNA_02904	0.79	-0.3
3,060,954	+		CCNA_02904	0.86	+1.4
3,060,960	+		CCNA_02904	0.87	+1.3
3,061,002	+				+0.3
3,061,075	-				+1.6
3,061,075	-				+1.0
3,061,081	+				+2.0
3,061,087	-				+0.1
3,061,098	+				+1.0
3,061,101	+				-1.2
3,061,101	+				+1.0
3,061,109	-				+1.3
3,061,115	+				-0.7
3,061,115	+				+0.8
3,061,116	+				-0.8
3,061,116	+				-0.2
3,061,119	-				+1.6
3,061,126	+				+1.0
3,061,152	+				-0.1
3,061,188	-		CCNA_02905	0.10	+1.9
3,061,192	-		CCNA_02905	0.11	-1.1
3,061,198	+		CCNA_02905	0.13	+0.1
3,061,211	+		CCNA_02905	0.16	+1.7
3,061,222	+		CCNA_02905	0.19	-1.2
3,061,222	+		CCNA_02905	0.19	+1.1
3,061,230	-		CCNA_02905	0.21	+0.7
3,061,230	-		CCNA_02905	0.21	+2.0
3,061,330	+		CCNA_02905	0.48	+0.1
3,061,347	+		CCNA_02905	0.52	+0.7
3,061,348	-		CCNA_02905	0.52	+0.9
3,061,367	+		CCNA_02905	0.57	-0.0
3,061,372	+		CCNA_02905	0.59	-0.3
3,061,386	+		CCNA_02905	0.62	-0.7
3,061,395	-		CCNA_02905	0.65	-0.2
3,061,456	+		CCNA_02905	0.81	+0.2
3,061,461	+		CCNA_02905	0.82	+0.2
3,061,461	+		CCNA_02905	0.82	+0.4
3,061,462	+		CCNA_02905	0.83	-0.6
3,061,464	-		CCNA_02905	0.83	-0.5
3,061,469	-		CCNA_02905	0.84	+0.3
3,061,469	-		CCNA_02905	0.84	+0.4
3,061,469	-		CCNA_02905	0.84	-1.5
3,061,524	-				+0.7
3,061,529	-				+1.2
3,061,535	+				+0.9
3,061,556	+				-0.2
3,061,567	+				+0.1
3,061,568	-				-0.6
3,061,575	-				+0.3
3,061,577	-				-1.4
3,061,604	+				+0.7
3,061,606	+				-2.0
3,061,606	+				-0.8
3,061,646	-				-1.0
3,061,671	-				+0.0
3,061,680	+				-0.2
3,061,686	+				+0.9
3,061,768	+		CCNA_02906	0.13	-0.2
3,061,792	+		CCNA_02906	0.16	-1.0
3,061,807	+		CCNA_02906	0.17	+0.6
3,061,825	+		CCNA_02906	0.19	-1.0
3,061,830	+		CCNA_02906	0.19	+0.1
3,061,830	+		CCNA_02906	0.19	-0.2
3,061,830	+		CCNA_02906	0.19	+0.1
3,061,839	-		CCNA_02906	0.20	-1.1
3,061,845	+		CCNA_02906	0.20	+0.8
3,061,876	+		CCNA_02906	0.23	+0.2
3,061,895	+		CCNA_02906	0.25	+0.7
3,061,895	+		CCNA_02906	0.25	+0.2
3,061,895	+		CCNA_02906	0.25	+0.8
3,061,895	+				+4.0
3,061,896	+		CCNA_02906	0.25	+0.9
3,061,903	+		CCNA_02906	0.26	+0.8
3,061,903	-		CCNA_02906	0.26	+1.2
3,061,903	-		CCNA_02906	0.26	+0.0
3,061,908	+		CCNA_02906	0.26	-1.1
3,061,921	-		CCNA_02906	0.27	-0.8
3,061,927	+		CCNA_02906	0.28	-0.5
3,061,961	+		CCNA_02906	0.31	-0.0
3,061,964	+		CCNA_02906	0.31	-1.0
3,061,966	+		CCNA_02906	0.32	-0.2
3,061,966	+		CCNA_02906	0.32	-0.3
3,061,966	+		CCNA_02906	0.32	-1.1
3,061,966	+		CCNA_02906	0.32	+0.9
3,061,969	-		CCNA_02906	0.32	+0.5
3,061,974	-		CCNA_02906	0.32	+1.2
3,061,974	-		CCNA_02906	0.32	+0.6
3,061,974	-		CCNA_02906	0.32	-0.0
3,061,974	-		CCNA_02906	0.32	+0.5
3,061,974	-		CCNA_02906	0.32	-1.5
3,061,974	-		CCNA_02906	0.32	+0.0
3,061,988	+		CCNA_02906	0.34	-0.2
3,061,988	+		CCNA_02906	0.34	-0.4
3,061,988	+		CCNA_02906	0.34	+1.3
3,061,996	-		CCNA_02906	0.34	-0.4
3,061,996	-		CCNA_02906	0.34	-1.0
3,061,998	+		CCNA_02906	0.34	-1.0
3,062,006	-		CCNA_02906	0.35	-0.7
3,062,031	+		CCNA_02906	0.37	+0.1
3,062,031	+		CCNA_02906	0.37	+0.5
3,062,031	+		CCNA_02906	0.37	-0.2
3,062,031	+		CCNA_02906	0.37	+2.6
3,062,039	-		CCNA_02906	0.38	+0.9
3,062,050	+		CCNA_02906	0.39	+1.1