Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02634

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_02633 and CCNA_02634 are separated by 85 nucleotidesCCNA_02634 and CCNA_02635 overlap by 1 nucleotides CCNA_02633: CCNA_02633 - membrane-bound glycosyl hydrolase, at 2,782,798 to 2,785,158 _02633 CCNA_02634: CCNA_02634 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 2,785,244 to 2,786,329 _02634 CCNA_02635: CCNA_02635 - cell division protein FtsW, at 2,786,329 to 2,787,501 _02635 Position (kb) 2785 2786 2787Strain fitness (log2 ratio) -2 -1 0 1 2at 2784.247 kb on - strand, within CCNA_02633at 2784.284 kb on - strand, within CCNA_02633at 2784.286 kb on - strand, within CCNA_02633at 2784.293 kb on - strand, within CCNA_02633at 2784.300 kb on + strand, within CCNA_02633at 2784.333 kb on + strand, within CCNA_02633at 2784.333 kb on + strand, within CCNA_02633at 2784.341 kb on - strand, within CCNA_02633at 2784.341 kb on - strand, within CCNA_02633at 2784.350 kb on - strand, within CCNA_02633at 2784.382 kb on + strand, within CCNA_02633at 2784.387 kb on + strand, within CCNA_02633at 2784.395 kb on - strand, within CCNA_02633at 2784.408 kb on - strand, within CCNA_02633at 2784.442 kb on + strand, within CCNA_02633at 2784.443 kb on + strand, within CCNA_02633at 2784.451 kb on - strand, within CCNA_02633at 2784.477 kb on - strand, within CCNA_02633at 2784.493 kb on + strand, within CCNA_02633at 2784.507 kb on - strand, within CCNA_02633at 2784.560 kb on + strand, within CCNA_02633at 2784.561 kb on + strand, within CCNA_02633at 2784.578 kb on + strand, within CCNA_02633at 2784.586 kb on - strand, within CCNA_02633at 2784.586 kb on - strand, within CCNA_02633at 2784.586 kb on - strand, within CCNA_02633at 2784.606 kb on + strand, within CCNA_02633at 2784.646 kb on + strand, within CCNA_02633at 2784.652 kb on - strand, within CCNA_02633at 2784.684 kb on - strand, within CCNA_02633at 2784.685 kb on - strand, within CCNA_02633at 2784.709 kb on + strand, within CCNA_02633at 2784.725 kb on + strand, within CCNA_02633at 2784.752 kb on + strand, within CCNA_02633at 2784.752 kb on + strand, within CCNA_02633at 2784.752 kb on + strand, within CCNA_02633at 2784.752 kb on + strand, within CCNA_02633at 2784.752 kb on + strand, within CCNA_02633at 2784.760 kb on - strand, within CCNA_02633at 2784.760 kb on - strand, within CCNA_02633at 2784.834 kb on - strand, within CCNA_02633at 2784.855 kb on - strand, within CCNA_02633at 2784.866 kb on + strand, within CCNA_02633at 2784.874 kb on - strand, within CCNA_02633at 2784.962 kb on + strandat 2784.970 kb on - strandat 2785.024 kb on - strandat 2785.041 kb on - strandat 2785.063 kb on + strandat 2785.076 kb on - strandat 2785.134 kb on - strandat 2785.215 kb on + strandat 2785.215 kb on + strandat 2785.223 kb on - strandat 2785.223 kb on - strandat 2785.223 kb on - strandat 2785.223 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Doxycycline hyclate 0.0001 mg/ml
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2,784,247 - CCNA_02633 0.61 -0.5
2,784,284 - CCNA_02633 0.63 -0.5
2,784,286 - CCNA_02633 0.63 +0.6
2,784,293 - CCNA_02633 0.63 -1.3
2,784,300 + CCNA_02633 0.64 -0.5
2,784,333 + CCNA_02633 0.65 -0.3
2,784,333 + CCNA_02633 0.65 -0.8
2,784,341 - CCNA_02633 0.65 -0.1
2,784,341 - CCNA_02633 0.65 -0.4
2,784,350 - CCNA_02633 0.66 -0.0
2,784,382 + CCNA_02633 0.67 -2.0
2,784,387 + CCNA_02633 0.67 -1.4
2,784,395 - CCNA_02633 0.68 -1.3
2,784,408 - CCNA_02633 0.68 +0.8
2,784,442 + CCNA_02633 0.70 -1.0
2,784,443 + CCNA_02633 0.70 -0.0
2,784,451 - CCNA_02633 0.70 -0.1
2,784,477 - CCNA_02633 0.71 -1.5
2,784,493 + CCNA_02633 0.72 -1.0
2,784,507 - CCNA_02633 0.72 -0.4
2,784,560 + CCNA_02633 0.75 +0.2
2,784,561 + CCNA_02633 0.75 +0.3
2,784,578 + CCNA_02633 0.75 +0.6
2,784,586 - CCNA_02633 0.76 +1.7
2,784,586 - CCNA_02633 0.76 -0.1
2,784,586 - CCNA_02633 0.76 -1.0
2,784,606 + CCNA_02633 0.77 -0.1
2,784,646 + CCNA_02633 0.78 +0.2
2,784,652 - CCNA_02633 0.79 +0.8
2,784,684 - CCNA_02633 0.80 -0.5
2,784,685 - CCNA_02633 0.80 -1.2
2,784,709 + CCNA_02633 0.81 -1.1
2,784,725 + CCNA_02633 0.82 -0.1
2,784,752 + CCNA_02633 0.83 -0.1
2,784,752 + CCNA_02633 0.83 -0.1
2,784,752 + CCNA_02633 0.83 -1.0
2,784,752 + CCNA_02633 0.83 +1.6
2,784,752 + CCNA_02633 0.83 -2.0
2,784,760 - CCNA_02633 0.83 +0.0
2,784,760 - CCNA_02633 0.83 +0.8
2,784,834 - CCNA_02633 0.86 -2.6
2,784,855 - CCNA_02633 0.87 -0.7
2,784,866 + CCNA_02633 0.88 -0.4
2,784,874 - CCNA_02633 0.88 +0.1
2,784,962 + +1.6
2,784,970 - -0.5
2,785,024 - +1.8
2,785,041 - +0.7
2,785,063 + -1.3
2,785,076 - -0.8
2,785,134 - -0.4
2,785,215 + +0.1
2,785,215 + -1.0
2,785,223 - +0.2
2,785,223 - +0.0
2,785,223 - -0.1
2,785,223 - +0.9

Or see this region's nucleotide sequence