Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_02122 and CCNA_02123 are separated by 335 nucleotides CCNA_02123 and CCNA_02124 are separated by 144 nucleotides CCNA_02124 and CCNA_02125 are separated by 243 nucleotides
CCNA_02122: CCNA_02122 - DNA repair nuclease, ligase-associated (TIGR04123) (from data) , at 2,273,885 to 2,274,592
_02122
CCNA_02123: CCNA_02123 - transposase, at 2,274,928 to 2,275,422
_02123
CCNA_02124: CCNA_02124 - hypothetical protein, at 2,275,567 to 2,276,028
_02124
CCNA_02125: CCNA_02125 - polar development protein podJ, at 2,276,272 to 2,279,196
_02125
Position (kb)
2274
2275
2276 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2273.974 kb on + strand, within CCNA_02122 at 2273.974 kb on + strand, within CCNA_02122 at 2273.995 kb on + strand, within CCNA_02122 at 2274.061 kb on - strand, within CCNA_02122 at 2274.089 kb on - strand, within CCNA_02122 at 2274.183 kb on + strand, within CCNA_02122 at 2274.207 kb on + strand, within CCNA_02122 at 2274.219 kb on + strand, within CCNA_02122 at 2274.229 kb on + strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.237 kb on - strand, within CCNA_02122 at 2274.269 kb on - strand, within CCNA_02122 at 2274.270 kb on - strand, within CCNA_02122 at 2274.280 kb on - strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.367 kb on + strand, within CCNA_02122 at 2274.375 kb on - strand, within CCNA_02122 at 2274.380 kb on + strand, within CCNA_02122 at 2274.453 kb on - strand, within CCNA_02122 at 2274.532 kb on - strand at 2274.556 kb on - strand at 2274.576 kb on - strand at 2275.412 kb on + strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.463 kb on - strand at 2275.684 kb on - strand, within CCNA_02124 at 2275.728 kb on - strand, within CCNA_02124 at 2275.756 kb on - strand, within CCNA_02124 at 2275.780 kb on - strand, within CCNA_02124 at 2275.792 kb on + strand, within CCNA_02124 at 2275.800 kb on - strand, within CCNA_02124 at 2275.828 kb on + strand, within CCNA_02124 at 2275.836 kb on - strand, within CCNA_02124 at 2275.836 kb on - strand, within CCNA_02124 at 2275.846 kb on - strand, within CCNA_02124 at 2275.846 kb on - strand, within CCNA_02124 at 2275.928 kb on - strand, within CCNA_02124 at 2276.220 kb on + strand at 2276.261 kb on - strand at 2276.277 kb on - strand at 2276.309 kb on + strand at 2276.357 kb on - strand at 2276.371 kb on - strand at 2276.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Doxycycline hyclate 0.0001 mg/ml remove 2,273,974 + CCNA_02122 0.13 +0.5 2,273,974 + CCNA_02122 0.13 -2.3 2,273,995 + CCNA_02122 0.16 -1.5 2,274,061 - CCNA_02122 0.25 +0.1 2,274,089 - CCNA_02122 0.29 -1.1 2,274,183 + CCNA_02122 0.42 -1.6 2,274,207 + CCNA_02122 0.45 -1.5 2,274,219 + CCNA_02122 0.47 -0.6 2,274,229 + CCNA_02122 0.49 +0.8 2,274,237 - CCNA_02122 0.50 -2.3 2,274,237 - CCNA_02122 0.50 -0.4 2,274,269 - CCNA_02122 0.54 -1.3 2,274,270 - CCNA_02122 0.54 +0.1 2,274,280 - CCNA_02122 0.56 -1.2 2,274,367 + CCNA_02122 0.68 -2.0 2,274,367 + CCNA_02122 0.68 +1.6 2,274,375 - CCNA_02122 0.69 -0.1 2,274,380 + CCNA_02122 0.70 -1.2 2,274,453 - CCNA_02122 0.80 -1.3 2,274,532 - -0.3 2,274,556 - +0.2 2,274,576 - +0.8 2,275,412 + +1.2 2,275,463 - -0.1 2,275,463 - -0.9 2,275,463 - -0.5 2,275,463 - -0.4 2,275,463 - +0.7 2,275,463 - -1.1 2,275,463 - -0.9 2,275,684 - CCNA_02124 0.25 -0.6 2,275,728 - CCNA_02124 0.35 -0.2 2,275,756 - CCNA_02124 0.41 +0.3 2,275,780 - CCNA_02124 0.46 -0.4 2,275,792 + CCNA_02124 0.49 -0.4 2,275,800 - CCNA_02124 0.50 -2.0 2,275,828 + CCNA_02124 0.56 -0.3 2,275,836 - CCNA_02124 0.58 +0.6 2,275,836 - CCNA_02124 0.58 -1.0 2,275,846 - CCNA_02124 0.60 +1.0 2,275,846 - CCNA_02124 0.60 -0.7 2,275,928 - CCNA_02124 0.78 +0.4 2,276,220 + -0.3 2,276,261 - +0.4 2,276,277 - +0.6 2,276,309 + -1.0 2,276,357 - +1.0 2,276,371 - +2.6 2,276,406 + -2.1
Or see this region's nucleotide sequence