Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01979

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
2,122,448	-				-0.5
2,122,449	-				+1.1
2,122,449	-				-0.4
2,122,466	+				-0.7
2,122,498	-				-1.7
2,122,522	+		CCNA_01978	0.12	-0.8
2,122,534	+		CCNA_01978	0.13	-1.5
2,122,580	+		CCNA_01978	0.19	+0.3
2,122,614	+		CCNA_01978	0.23	-1.0
2,122,622	+		CCNA_01978	0.23	+1.0
2,122,622	+		CCNA_01978	0.23	+1.5
2,122,630	-		CCNA_01978	0.24	+0.7
2,122,630	-		CCNA_01978	0.24	+0.4
2,122,630	-		CCNA_01978	0.24	-0.7
2,122,630	-		CCNA_01978	0.24	-1.1
2,122,657	-		CCNA_01978	0.28	+3.1
2,122,659	+		CCNA_01978	0.28	+0.4
2,122,662	-		CCNA_01978	0.28	+0.9
2,122,811	+		CCNA_01978	0.46	-1.2
2,122,889	+		CCNA_01978	0.55	-0.1
2,122,951	+		CCNA_01978	0.62	-0.1
2,123,005	-		CCNA_01978	0.68	+0.2
2,123,042	+		CCNA_01978	0.73	-0.1
2,123,048	+		CCNA_01978	0.73	-1.3
2,123,063	+		CCNA_01978	0.75	+1.9
2,123,142	+		CCNA_01978	0.85	+0.3
2,123,143	+		CCNA_01978	0.85	-2.5
2,123,151	-		CCNA_01978	0.86	+0.3
2,123,169	-		CCNA_01978	0.88	-0.8
2,123,171	+		CCNA_01978	0.88	-1.7
2,123,171	+		CCNA_01978	0.88	+0.2
2,123,178	+		CCNA_01978	0.89	-0.1
2,123,179	-		CCNA_01978	0.89	+0.9
2,123,179	-		CCNA_01978	0.89	-1.5
2,123,179	-		CCNA_01978	0.89	-1.1
2,123,179	-		CCNA_01978	0.89	-1.7
2,123,179	-		CCNA_01978	0.89	+1.4
2,123,186	-		CCNA_01978	0.90	+0.5
2,123,428	+				+2.7
2,123,436	-				-1.4
2,123,583	+				+1.3
2,123,649	+		CCNA_01979	0.29	+3.1
2,123,675	+		CCNA_01979	0.33	+3.7
2,123,873	+		CCNA_01979	0.61	+3.9
2,123,894	+		CCNA_01979	0.64	+2.8
2,124,144	+				+1.2
2,124,183	+				+1.1
2,124,183	+				+1.2
2,124,200	+				-0.5
2,124,208	-				+0.3
2,124,250	+				+0.7
2,124,270	+				+1.7
2,124,270	+				+2.5
2,124,280	+				-0.2
2,124,287	-				-1.3
2,124,302	-		CCNA_01980	0.11	+0.2
2,124,304	+		CCNA_01980	0.11	-0.5
2,124,326	+		CCNA_01980	0.14	+0.1
2,124,334	-		CCNA_01980	0.15	+1.8
2,124,364	+		CCNA_01980	0.19	+1.4
2,124,364	+		CCNA_01980	0.19	-1.2
2,124,372	-		CCNA_01980	0.20	-1.8
2,124,382	-		CCNA_01980	0.21	-0.3
2,124,394	-		CCNA_01980	0.23	-0.8
2,124,420	-		CCNA_01980	0.26	+0.2
2,124,420	-		CCNA_01980	0.26	+0.7
2,124,522	+		CCNA_01980	0.39	-1.0
2,124,558	-		CCNA_01980	0.44	+1.5
2,124,589	+		CCNA_01980	0.48	+0.3
2,124,589	+		CCNA_01980	0.48	-1.4
2,124,589	+		CCNA_01980	0.48	-0.7
2,124,589	+		CCNA_01980	0.48	-0.0
2,124,589	+		CCNA_01980	0.48	+0.1
2,124,589	+		CCNA_01980	0.48	-1.8
2,124,597	-		CCNA_01980	0.49	+1.9
2,124,597	-		CCNA_01980	0.49	+1.9
2,124,627	-		CCNA_01980	0.53	+0.3
2,124,637	+		CCNA_01980	0.54	-1.7
2,124,665	-		CCNA_01980	0.58	+0.1
2,124,673	-		CCNA_01980	0.59	-1.1
2,124,724	-		CCNA_01980	0.66	-0.3
2,124,724	-		CCNA_01980	0.66	+1.0
2,124,760	+		CCNA_01980	0.70	+0.1
2,124,772	+		CCNA_01980	0.72	-0.2
2,124,772	+		CCNA_01980	0.72	-0.6
2,124,772	+		CCNA_01980	0.72	+0.7
2,124,772	+		CCNA_01980	0.72	-0.1
2,124,780	-		CCNA_01980	0.73	+1.5
2,124,822	+		CCNA_01980	0.79	+0.2
2,124,823	+		CCNA_01980	0.79	-0.1
2,124,825	-		CCNA_01980	0.79	+2.0
2,124,834	+		CCNA_01980	0.80	+0.8
2,124,839	+		CCNA_01980	0.81	-1.4
2,124,849	+		CCNA_01980	0.82	+0.7
2,124,849	+		CCNA_01980	0.82	-0.1
2,124,849	+		CCNA_01980	0.82	+1.0
2,124,905	+		CCNA_01980	0.89	-0.4
2,124,912	-				-0.6
2,124,912	-				+0.1
2,124,912	-				+1.0
2,124,913	-				+1.3
2,124,928	-				-0.2
2,125,019	-				-1.4
2,125,030	-				-1.5
2,125,060	+				+1.1
2,125,060	+				-0.6
2,125,060	+				+1.5
2,125,067	+				-1.9
2,125,075	-				+0.9
2,125,075	-				+2.2
2,125,075	-				+1.4
2,125,077	+				-2.1
2,125,083	+				-1.1
2,125,092	-				-0.3
2,125,125	+				+0.8