Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01685

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
1,811,526	+				+0.6
1,811,623	-		CCNA_01684	0.18	+1.6
1,811,685	-		CCNA_01684	0.25	+2.0
1,811,716	-		CCNA_01684	0.28	+1.6
1,811,716	-		CCNA_01684	0.28	+1.8
1,811,731	-		CCNA_01684	0.30	+1.8
1,811,800	-		CCNA_01684	0.38	+1.4
1,811,817	-		CCNA_01684	0.40	+1.3
1,811,823	+		CCNA_01684	0.40	-1.0
1,811,868	+		CCNA_01684	0.45	+0.9
1,811,953	-		CCNA_01684	0.55	+1.6
1,811,970	-		CCNA_01684	0.57	+1.6
1,812,018	-		CCNA_01684	0.62	+2.5
1,812,023	-		CCNA_01684	0.63	+2.2
1,812,112	+		CCNA_01684	0.73	+2.1
1,812,120	-		CCNA_01684	0.74	+2.2
1,812,120	-		CCNA_01684	0.74	+1.5
1,812,159	+		CCNA_01684	0.78	-0.3
1,812,172	-		CCNA_01684	0.80	+1.3
1,812,172	-		CCNA_01684	0.80	+1.5
1,812,174	+		CCNA_01684	0.80	-1.7
1,812,215	-		CCNA_01684	0.85	+1.4
1,812,256	+		CCNA_01684	0.89	-1.1
1,812,266	+				+0.7
1,812,274	-				+0.6
1,812,274	-				+1.2
1,812,277	+				+1.2
1,812,330	+				+0.0
1,812,338	-				+0.7
1,812,356	-				+1.0
1,812,357	+				-0.1
1,812,423	+				-1.5
1,812,526	-				+0.6
1,812,555	-		CCNA_01685	0.12	+0.8
1,812,600	-		CCNA_01685	0.26	+0.2
1,812,631	-		CCNA_01685	0.35	+1.4
1,812,636	-		CCNA_01685	0.37	+0.5
1,812,636	-		CCNA_01685	0.37	+0.2
1,812,651	+		CCNA_01685	0.41	+2.0
1,812,718	+		CCNA_01685	0.62	-0.8
1,812,725	-		CCNA_01685	0.64	-0.5
1,812,731	+		CCNA_01685	0.65	-1.3
1,812,770	-		CCNA_01685	0.77	+1.6
1,812,785	-		CCNA_01685	0.82	+0.3
1,812,859	-				+0.0
1,812,904	+				+3.5
1,812,954	+				+0.5
1,812,985	+				-0.1
1,812,996	+				-0.4
1,813,004	-				-0.2
1,813,004	-				+0.7
1,813,004	-				-1.1
1,813,127	+		CCNA_01686	0.11	-0.8
1,813,127	+		CCNA_01686	0.11	+2.3
1,813,153	+		CCNA_01686	0.13	+0.3
1,813,161	-		CCNA_01686	0.14	-1.4
1,813,184	+		CCNA_01686	0.16	-0.5
1,813,212	+		CCNA_01686	0.19	-1.7
1,813,306	+		CCNA_01686	0.27	-2.1
1,813,308	-		CCNA_01686	0.27	+1.0
1,813,314	-		CCNA_01686	0.28	-0.2
1,813,319	-		CCNA_01686	0.28	+0.2
1,813,342	-		CCNA_01686	0.30	+0.9
1,813,425	+		CCNA_01686	0.38	-0.5
1,813,427	+		CCNA_01686	0.38	-1.6
1,813,497	+		CCNA_01686	0.44	-1.2
1,813,497	+		CCNA_01686	0.44	+0.2
1,813,497	+		CCNA_01686	0.44	+0.7
1,813,497	+		CCNA_01686	0.44	-0.2
1,813,497	+		CCNA_01686	0.44	+0.4
1,813,497	+		CCNA_01686	0.44	-0.7
1,813,497	+		CCNA_01686	0.44	+0.2
1,813,497	+		CCNA_01686	0.44	+1.0
1,813,497	+		CCNA_01686	0.44	-0.8
1,813,497	+		CCNA_01686	0.44	+1.5
1,813,497	+		CCNA_01686	0.44	-0.5
1,813,497	+		CCNA_01686	0.44	+0.7
1,813,505	-		CCNA_01686	0.45	+0.3
1,813,505	-		CCNA_01686	0.45	-0.6
1,813,505	-		CCNA_01686	0.45	-0.3
1,813,515	-		CCNA_01686	0.46	+0.3
1,813,529	+		CCNA_01686	0.47	-1.3
1,813,585	+		CCNA_01686	0.52	+1.4
1,813,597	+		CCNA_01686	0.53	+1.9
1,813,605	-		CCNA_01686	0.54	-0.2
1,813,627	+		CCNA_01686	0.56	+0.6
1,813,635	+		CCNA_01686	0.57	+0.5
1,813,635	+		CCNA_01686	0.57	-1.1
1,813,643	-		CCNA_01686	0.58	-0.1
1,813,643	-		CCNA_01686	0.58	+0.9
1,813,679	+		CCNA_01686	0.61	-0.9
1,813,683	+		CCNA_01686	0.61	-1.7
1,813,683	+		CCNA_01686	0.61	-0.3
1,813,692	-		CCNA_01686	0.62	+0.2
1,813,731	+		CCNA_01686	0.65	-0.2
1,813,731	+		CCNA_01686	0.65	-2.1
1,813,731	+		CCNA_01686	0.65	+0.9
1,813,736	+		CCNA_01686	0.66	+0.1
1,813,739	-		CCNA_01686	0.66	-1.2
1,813,741	+		CCNA_01686	0.66	+0.2
1,813,766	+		CCNA_01686	0.69	+0.6