Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01300

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
1,424,855	+		CCNA_01299	0.13	-0.1
1,424,855	+		CCNA_01299	0.13	-1.1
1,424,882	-		CCNA_01299	0.17	-0.9
1,424,909	+		CCNA_01299	0.22	+0.1
1,424,909	+		CCNA_01299	0.22	+1.2
1,424,909	+		CCNA_01299	0.22	+0.1
1,424,917	-		CCNA_01299	0.23	-1.8
1,424,918	-		CCNA_01299	0.23	+0.2
1,424,918	-		CCNA_01299	0.23	-1.6
1,424,918	-		CCNA_01299	0.23	-1.0
1,424,930	-		CCNA_01299	0.25	-0.3
1,424,957	+		CCNA_01299	0.29	-0.2
1,425,109	+		CCNA_01299	0.53	+0.2
1,425,143	-		CCNA_01299	0.59	+0.0
1,425,245	-		CCNA_01299	0.75	+0.1
1,425,248	+		CCNA_01299	0.76	-1.1
1,425,256	-		CCNA_01299	0.77	-0.9
1,425,306	+		CCNA_01299	0.85	-0.2
1,425,306	+		CCNA_01299	0.85	-0.7
1,425,306	+		CCNA_01299	0.85	-0.2
1,425,306	+		CCNA_01299	0.85	-0.2
1,425,306	+		CCNA_01299	0.85	-0.4
1,425,306	+		CCNA_01299	0.85	-1.0
1,425,314	-		CCNA_01299	0.86	-2.6
1,425,314	-		CCNA_01299	0.86	-0.2
1,425,314	-		CCNA_01299	0.86	+0.0
1,425,314	-		CCNA_01299	0.86	+0.2
1,425,314	-		CCNA_01299	0.86	-0.1
1,425,314	-		CCNA_01299	0.86	+0.1
1,425,314	-		CCNA_01299	0.86	-0.7
1,425,314	-		CCNA_01299	0.86	-0.6
1,425,314	-		CCNA_01299	0.86	+0.3
1,425,318	-		CCNA_01299	0.87	+0.4
1,425,421	+				+0.9
1,425,432	+				-0.3
1,425,440	-				+0.7
1,425,450	-				-0.4
1,425,478	+				-0.3
1,425,491	-				-0.2
1,425,509	+				-0.1
1,425,567	+				+1.4
1,425,611	-				-0.8
1,425,613	-				-0.7
1,425,630	+				-0.1
1,425,631	-				-0.6
1,425,726	+		CCNA_01300	0.11	+1.2
1,425,767	-		CCNA_01300	0.16	+1.4
1,425,769	+		CCNA_01300	0.16	+1.0
1,425,769	+		CCNA_01300	0.16	+1.1
1,425,769	+		CCNA_01300	0.16	+1.2
1,425,777	-		CCNA_01300	0.17	+0.6
1,425,791	+		CCNA_01300	0.18	+0.7
1,425,820	-		CCNA_01300	0.22	+1.4
1,425,820	-		CCNA_01300	0.22	+0.3
1,425,820	-		CCNA_01300	0.22	-1.4
1,425,854	-		CCNA_01300	0.26	-1.0
1,425,886	+		CCNA_01300	0.30	-0.7
1,425,886	+		CCNA_01300	0.30	-0.1
1,425,894	-		CCNA_01300	0.31	-1.6
1,425,914	+		CCNA_01300	0.33	+0.8
1,425,924	+		CCNA_01300	0.35	+1.5
1,425,932	-		CCNA_01300	0.36	-0.8
1,425,937	-		CCNA_01300	0.36	+0.0
1,425,957	+		CCNA_01300	0.39	-0.1
1,425,990	+		CCNA_01300	0.43	+0.3
1,425,998	-		CCNA_01300	0.44	+0.9
1,425,998	-		CCNA_01300	0.44	-1.3
1,426,036	+		CCNA_01300	0.48	+1.1
1,426,049	+		CCNA_01300	0.50	+2.2
1,426,082	-		CCNA_01300	0.54	+0.3
1,426,085	+		CCNA_01300	0.54	-0.1
1,426,090	+		CCNA_01300	0.55	+0.6
1,426,104	+		CCNA_01300	0.57	+0.3
1,426,112	-		CCNA_01300	0.58	-0.1
1,426,121	-		CCNA_01300	0.59	-1.0
1,426,126	+		CCNA_01300	0.59	+0.3
1,426,134	-		CCNA_01300	0.60	-0.2
1,426,147	+		CCNA_01300	0.62	+0.9
1,426,147	+		CCNA_01300	0.62	+0.3
1,426,155	-		CCNA_01300	0.63	-0.8
1,426,199	-		CCNA_01300	0.68	+1.3
1,426,212	+		CCNA_01300	0.70	+2.4
1,426,220	-		CCNA_01300	0.71	+2.4
1,426,230	-		CCNA_01300	0.72	+0.9
1,426,259	+		CCNA_01300	0.76	+0.1
1,426,336	+		CCNA_01300	0.85	+0.8
1,426,369	-		CCNA_01300	0.89	-0.5
1,426,374	-		CCNA_01300	0.90	-0.4
1,426,570	-				+2.0
1,426,664	-				-0.9
1,426,665	+				+0.3
1,426,760	-		CCNA_01301	0.13	-0.0
1,426,790	-		CCNA_01301	0.15	+0.2
1,426,809	+		CCNA_01301	0.15	-0.2
1,426,818	-		CCNA_01301	0.16	-1.1
1,426,818	-		CCNA_01301	0.16	-0.7
1,426,844	+		CCNA_01301	0.17	-0.9
1,426,844	+		CCNA_01301	0.17	+0.9
1,426,853	-		CCNA_01301	0.17	-1.1
1,426,868	+		CCNA_01301	0.18	-1.9
1,426,886	-		CCNA_01301	0.19	-0.2
1,426,895	-		CCNA_01301	0.19	+0.9
1,426,920	+		CCNA_01301	0.20	+1.7
1,426,947	+		CCNA_01301	0.21	+0.6
1,427,002	+		CCNA_01301	0.24	+0.3
1,427,010	-		CCNA_01301	0.24	-0.3
1,427,028	+		CCNA_01301	0.25	+0.9
1,427,042	-		CCNA_01301	0.26	-0.4
1,427,047	+		CCNA_01301	0.26	-0.2
1,427,057	+		CCNA_01301	0.26	+0.9
1,427,058	+		CCNA_01301	0.26	+1.6
1,427,065	-		CCNA_01301	0.27	-0.8
1,427,082	+		CCNA_01301	0.27	+0.1
1,427,118	-		CCNA_01301	0.29	+0.6
1,427,135	-		CCNA_01301	0.30	+0.9
1,427,157	-		CCNA_01301	0.31	+1.1
1,427,246	-		CCNA_01301	0.34	+1.1
1,427,283	+		CCNA_01301	0.36	-0.4
1,427,325	-		CCNA_01301	0.38	-0.1
1,427,327	+		CCNA_01301	0.38	-0.2
1,427,335	-		CCNA_01301	0.38	+1.3
1,427,339	+		CCNA_01301	0.38	+1.1
1,427,377	-		CCNA_01301	0.40	-0.0
1,427,390	+		CCNA_01301	0.41	+0.2
1,427,438	+		CCNA_01301	0.43	+0.1
1,427,438	+		CCNA_01301	0.43	-0.4
1,427,445	+		CCNA_01301	0.43	+0.4
1,427,445	+		CCNA_01301	0.43	+1.6
1,427,445	+		CCNA_01301	0.43	+0.4
1,427,453	-		CCNA_01301	0.43	+0.2
1,427,453	-		CCNA_01301	0.43	-1.4
1,427,453	-		CCNA_01301	0.43	+0.1
1,427,453	-		CCNA_01301	0.43	+1.3
1,427,453	-		CCNA_01301	0.43	-1.8
1,427,453	-		CCNA_01301	0.43	+0.8
1,427,458	-		CCNA_01301	0.44	+0.8