Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01296

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
1,419,268	-				+0.9
1,419,269	-				+1.9
1,419,277	-				+1.7
1,419,287	-				+2.1
1,419,338	-		CCNA_01295	0.11	+1.3
1,419,346	-		CCNA_01295	0.12	+1.5
1,419,346	-		CCNA_01295	0.12	+1.9
1,419,372	-		CCNA_01295	0.16	+1.9
1,419,395	-		CCNA_01295	0.19	+1.6
1,419,404	+		CCNA_01295	0.20	-0.9
1,419,504	-		CCNA_01295	0.34	+2.1
1,419,600	+		CCNA_01295	0.47	+0.6
1,419,600	+		CCNA_01295	0.47	-0.8
1,419,608	-		CCNA_01295	0.48	+1.9
1,419,616	-		CCNA_01295	0.49	+2.4
1,419,622	-		CCNA_01295	0.50	+2.3
1,419,629	+				+2.2
1,419,631	+		CCNA_01295	0.51	+1.3
1,419,639	-		CCNA_01295	0.52	+1.6
1,419,646	-		CCNA_01295	0.53	+2.2
1,419,646	-		CCNA_01295	0.53	+2.3
1,419,660	+		CCNA_01295	0.55	+1.0
1,419,666	+		CCNA_01295	0.56	+1.4
1,419,681	+		CCNA_01295	0.58	+0.2
1,419,681	+		CCNA_01295	0.58	+1.9
1,419,712	+		CCNA_01295	0.62	+1.6
1,419,720	-		CCNA_01295	0.63	+2.3
1,419,720	-		CCNA_01295	0.63	+1.4
1,419,722	+		CCNA_01295	0.63	+1.4
1,419,780	+		CCNA_01295	0.71	+1.8
1,419,780	+		CCNA_01295	0.71	+0.3
1,419,785	+		CCNA_01295	0.72	+1.5
1,419,790	+		CCNA_01295	0.72	+1.1
1,419,790	+		CCNA_01295	0.72	+1.0
1,419,803	-		CCNA_01295	0.74	+1.9
1,419,910	+		CCNA_01295	0.89	+1.1
1,419,971	-				+1.5
1,419,999	+				+0.1
1,419,999	+				+0.7
1,420,007	-				+0.8
1,420,012	-				-0.1
1,420,038	+				-2.0
1,420,098	+				-0.3
1,420,098	+				-0.3
1,420,098	+				-1.6
1,420,099	-				+1.4
1,420,116	+				-0.7
1,420,116	+				-1.0
1,420,116	+				-0.8
1,420,116	+				+0.4
1,420,116	+				+0.4
1,420,117	-				+1.0
1,420,124	-				+1.3
1,420,124	-				+1.9
1,420,124	-				+1.1
1,420,124	-				+1.5
1,420,124	-				+1.6
1,420,129	-				+0.9
1,420,175	-				+0.9
1,420,176	-				+1.5
1,420,240	-				+0.9
1,420,242	+				+0.5
1,420,269	-				+1.4
1,420,269	-				+1.3
1,420,311	+		CCNA_01296	0.10	+0.3
1,420,323	+		CCNA_01296	0.11	+0.4
1,420,336	-		CCNA_01296	0.11	+1.8
1,420,345	+		CCNA_01296	0.12	-2.1
1,420,353	-		CCNA_01296	0.12	+0.9
1,420,353	-		CCNA_01296	0.12	+1.8
1,420,401	-		CCNA_01296	0.15	+1.2
1,420,435	+		CCNA_01296	0.16	+0.4
1,420,457	+		CCNA_01296	0.18	+0.2
1,420,462	+		CCNA_01296	0.18	-0.3
1,420,465	-		CCNA_01296	0.18	+1.1
1,420,491	-		CCNA_01296	0.19	+0.5
1,420,491	-		CCNA_01296	0.19	+0.8
1,420,526	-		CCNA_01296	0.21	-0.1
1,420,543	-		CCNA_01296	0.22	+0.5
1,420,554	+		CCNA_01296	0.23	-0.8
1,420,560	+		CCNA_01296	0.23	+0.0
1,420,560	+		CCNA_01296	0.23	+1.5
1,420,562	-		CCNA_01296	0.23	+2.3
1,420,562	-		CCNA_01296	0.23	+1.0
1,420,562	-		CCNA_01296	0.23	+0.3
1,420,579	+		CCNA_01296	0.24	-0.1
1,420,579	+		CCNA_01296	0.24	+0.8
1,420,602	+		CCNA_01296	0.25	-0.3
1,420,651	+		CCNA_01296	0.28	-2.5
1,420,669	+		CCNA_01296	0.29	-0.5
1,420,677	-		CCNA_01296	0.29	+1.3
1,420,679	-		CCNA_01296	0.29	+2.1
1,420,683	-		CCNA_01296	0.29	+0.4
1,420,729	-		CCNA_01296	0.32	+0.9
1,420,766	+		CCNA_01296	0.34	-0.2
1,420,801	-		CCNA_01296	0.35	+0.9
1,420,801	-		CCNA_01296	0.35	+0.5
1,420,858	+		CCNA_01296	0.38	+0.5
1,420,928	+		CCNA_01296	0.42	-0.9
1,420,945	+		CCNA_01296	0.43	-1.7
1,420,958	-		CCNA_01296	0.44	+1.0
1,420,966	+		CCNA_01296	0.44	-1.6
1,420,974	-		CCNA_01296	0.44	+0.8
1,420,994	+		CCNA_01296	0.45	-0.9
1,421,013	+		CCNA_01296	0.46	-1.1
1,421,026	-		CCNA_01296	0.47	+0.5
1,421,077	+		CCNA_01296	0.50	-0.3
1,421,084	+		CCNA_01296	0.50	+1.8
1,421,084	+		CCNA_01296	0.50	-0.3
1,421,092	-		CCNA_01296	0.50	+0.1
1,421,113	-		CCNA_01296	0.52	+1.0
1,421,123	-		CCNA_01296	0.52	+1.1
1,421,140	-		CCNA_01296	0.53	+0.3
1,421,147	-		CCNA_01296	0.53	+0.7
1,421,147	-		CCNA_01296	0.53	-0.4
1,421,157	+		CCNA_01296	0.54	-0.5
1,421,157	+		CCNA_01296	0.54	-0.0
1,421,157	+		CCNA_01296	0.54	-0.3
1,421,164	-		CCNA_01296	0.54	+0.6
1,421,218	+		CCNA_01296	0.57	+0.3
1,421,219	+		CCNA_01296	0.57	-0.5
1,421,226	-		CCNA_01296	0.57	+0.5
1,421,231	+		CCNA_01296	0.58	+0.8
1,421,238	-		CCNA_01296	0.58	+0.8
1,421,239	-		CCNA_01296	0.58	+0.5
1,421,268	-		CCNA_01296	0.60	+0.0
1,421,337	-		CCNA_01296	0.63	+0.7
1,421,369	-		CCNA_01296	0.65	+0.6
1,421,373	-		CCNA_01296	0.65	-0.2
1,421,390	+		CCNA_01296	0.66	+1.1
1,421,390	+		CCNA_01296	0.66	-0.8
1,421,437	-		CCNA_01296	0.68	+0.8
1,421,526	-		CCNA_01296	0.73	+0.0
1,421,547	+		CCNA_01296	0.74	+2.7
1,421,547	+		CCNA_01296	0.74	+1.3
1,421,547	+		CCNA_01296	0.74	+0.8
1,421,547	+		CCNA_01296	0.74	+1.4
1,421,555	-		CCNA_01296	0.74	+1.4
1,421,555	-		CCNA_01296	0.74	+0.5
1,421,600	-		CCNA_01296	0.77	-1.3
1,421,600	-		CCNA_01296	0.77	+0.9
1,421,616	+		CCNA_01296	0.78	-0.7
1,421,621	+		CCNA_01296	0.78	-0.6
1,421,626	+		CCNA_01296	0.78	-1.4
1,421,631	+		CCNA_01296	0.78	-0.1
1,421,634	-		CCNA_01296	0.79	+0.1
1,421,639	-		CCNA_01296	0.79	+1.2
1,421,643	+		CCNA_01296	0.79	+0.5
1,421,649	+		CCNA_01296	0.79	-1.5
1,421,651	-		CCNA_01296	0.79	+0.7
1,421,651	-		CCNA_01296	0.79	+0.4
1,421,697	+		CCNA_01296	0.82	-1.7
1,421,705	-		CCNA_01296	0.82	-0.6
1,421,724	+		CCNA_01296	0.83	-1.7
1,421,724	+		CCNA_01296	0.83	+2.1
1,421,724	+		CCNA_01296	0.83	-1.8
1,421,732	-		CCNA_01296	0.84	+0.9
1,421,732	-		CCNA_01296	0.84	+1.7
1,421,757	+		CCNA_01296	0.85	-1.6
1,421,757	+		CCNA_01296	0.85	-0.5
1,421,757	+		CCNA_01296	0.85	-1.1
1,421,757	+		CCNA_01296	0.85	-0.9
1,421,757	+		CCNA_01296	0.85	-0.4
1,421,764	-		CCNA_01296	0.85	+0.3
1,421,765	-		CCNA_01296	0.85	+0.1
1,421,765	-		CCNA_01296	0.85	+0.8
1,421,813	-		CCNA_01296	0.88	-0.6
1,421,817	+		CCNA_01296	0.88	+2.5
1,421,822	+		CCNA_01296	0.88	-1.0
1,421,825	-		CCNA_01296	0.88	-0.1
1,421,825	-		CCNA_01296	0.88	+0.6
1,421,825	-		CCNA_01296	0.88	+0.3
1,421,830	-		CCNA_01296	0.89	+1.8
1,421,835	-		CCNA_01296	0.89	-1.7
1,421,860	-				+0.3
1,421,883	-				-0.4
1,421,911	-				+1.5
1,421,955	-				+0.6
1,422,034	-				-0.3
1,422,199	-				+1.0
1,422,225	-				-0.1
1,422,226	+				-0.9
1,422,272	+		CCNA_01297	0.14	-0.9
1,422,325	-		CCNA_01297	0.20	+1.7
1,422,363	-		CCNA_01297	0.25	-0.1
1,422,395	+		CCNA_01297	0.29	-1.7
1,422,400	+		CCNA_01297	0.29	-0.6
1,422,405	+		CCNA_01297	0.30	-0.4
1,422,434	+		CCNA_01297	0.33	-2.0
1,422,458	+		CCNA_01297	0.36	+1.0
1,422,458	+		CCNA_01297	0.36	-1.6
1,422,459	-		CCNA_01297	0.36	+0.8
1,422,487	+		CCNA_01297	0.40	+0.4
1,422,512	-		CCNA_01297	0.43	+0.2
1,422,536	-		CCNA_01297	0.46	-0.3
1,422,537	-		CCNA_01297	0.46	-1.1
1,422,542	+		CCNA_01297	0.46	-0.1
1,422,588	+		CCNA_01297	0.52	-1.7
1,422,600	+		CCNA_01297	0.53	+0.5
1,422,608	-		CCNA_01297	0.54	+0.1
1,422,657	+		CCNA_01297	0.60	-1.1
1,422,665	-		CCNA_01297	0.61	+0.3
1,422,680	+		CCNA_01297	0.63	+0.1
1,422,681	-		CCNA_01297	0.63	-2.0
1,422,691	-		CCNA_01297	0.64	+1.2
1,422,723	+		CCNA_01297	0.68	+0.7
1,422,724	+		CCNA_01297	0.68	+0.8
1,422,724	+		CCNA_01297	0.68	-0.1
1,422,732	-		CCNA_01297	0.69	+1.0
1,422,742	-		CCNA_01297	0.70	+1.0
1,422,749	+		CCNA_01297	0.71	+0.1
1,422,808	+		CCNA_01297	0.78	-0.5
1,422,886	+		CCNA_01297	0.87	+1.7
1,422,894	-		CCNA_01297	0.88	+0.4
1,422,894	-		CCNA_01297	0.88	-0.6
1,422,894	-		CCNA_01297	0.88	+0.8