Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01278

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Doxycycline hyclate 0.0001 mg/ml
1,403,400	+		CCNA_01277	0.29	+0.8
1,403,454	-		CCNA_01277	0.33	+0.5
1,403,494	-		CCNA_01277	0.36	+0.8
1,403,514	+		CCNA_01277	0.38	+0.7
1,403,587	-		CCNA_01277	0.43	-1.7
1,403,618	+		CCNA_01277	0.45	+0.9
1,403,647	-		CCNA_01277	0.47	+0.5
1,403,660	+		CCNA_01277	0.48	+0.8
1,403,682	-		CCNA_01277	0.49	+0.2
1,403,693	+		CCNA_01277	0.50	-0.3
1,403,699	+		CCNA_01277	0.51	-0.4
1,403,701	-		CCNA_01277	0.51	-0.0
1,403,702	-		CCNA_01277	0.51	-0.5
1,403,707	-		CCNA_01277	0.51	+1.6
1,403,741	+		CCNA_01277	0.54	-0.3
1,403,749	-		CCNA_01277	0.54	-0.6
1,403,799	+		CCNA_01277	0.58	-0.0
1,403,826	-		CCNA_01277	0.60	-0.7
1,403,831	-		CCNA_01277	0.60	-0.8
1,403,873	+		CCNA_01277	0.63	-1.5
1,403,913	+		CCNA_01277	0.66	-0.9
1,403,939	-		CCNA_01277	0.68	+0.8
1,403,951	+		CCNA_01277	0.69	+0.8
1,403,963	+		CCNA_01277	0.69	-1.3
1,403,963	+		CCNA_01277	0.69	-0.0
1,403,963	+		CCNA_01277	0.69	+0.9
1,403,994	-		CCNA_01277	0.72	+1.5
1,404,034	+		CCNA_01277	0.74	-1.6
1,404,046	-		CCNA_01277	0.75	-0.8
1,404,133	-		CCNA_01277	0.82	-0.4
1,404,134	+		CCNA_01277	0.82	-0.7
1,404,194	-		CCNA_01277	0.86	+0.3
1,404,217	-		CCNA_01277	0.87	-0.4
1,404,240	+		CCNA_01277	0.89	+0.2
1,404,257	+				-0.3
1,404,260	-				-0.2
1,404,330	+				-0.9
1,404,330	+				+0.9
1,404,338	-				+1.4
1,404,338	-				-0.6
1,404,365	+				+2.2
1,404,373	-				+0.4
1,404,446	+		CCNA_01278	0.11	-0.8
1,404,449	-		CCNA_01278	0.11	+1.0
1,404,449	-		CCNA_01278	0.11	-0.1
1,404,449	-		CCNA_01278	0.11	+0.9
1,404,465	+		CCNA_01278	0.15	-0.9
1,404,480	-		CCNA_01278	0.18	+0.8
1,404,503	-		CCNA_01278	0.22	+0.3
1,404,503	-		CCNA_01278	0.22	+1.0
1,404,503	-		CCNA_01278	0.22	+0.9
1,404,503	-		CCNA_01278	0.22	+0.8
1,404,503	-		CCNA_01278	0.22	+0.7
1,404,513	-		CCNA_01278	0.25	-0.7
1,404,617	-		CCNA_01278	0.46	+0.8
1,404,690	-		CCNA_01278	0.61	+0.1
1,404,781	+		CCNA_01278	0.79	-0.2
1,404,783	-		CCNA_01278	0.80	-0.3
1,404,831	-		CCNA_01278	0.90	+1.1
1,404,832	-		CCNA_01278	0.90	-0.9
1,404,832	-		CCNA_01278	0.90	+0.1
1,404,857	+				-0.8
1,404,857	+				-1.4
1,404,865	-				-1.5
1,404,865	-				+1.7
1,404,875	-				-0.7
1,404,930	-				-0.3
1,404,974	+				-1.7
1,404,987	-				-1.0
1,404,992	-				-0.9
1,405,004	-				+0.9
1,405,031	+				+0.6
1,405,039	-				+1.3
1,405,046	-				+1.2
1,405,056	+				-0.6
1,405,062	+				-0.4
1,405,070	-				+1.9
1,405,115	+		CCNA_01279	0.15	+0.4
1,405,115	+		CCNA_01279	0.15	-0.5
1,405,123	-		CCNA_01279	0.16	+1.7
1,405,236	-		CCNA_01279	0.30	+0.0
1,405,248	-		CCNA_01279	0.32	+1.2
1,405,446	-		CCNA_01279	0.57	+1.3
1,405,515	-		CCNA_01279	0.66	+1.6
1,405,515	-		CCNA_01279	0.66	+1.4
1,405,526	-		CCNA_01279	0.67	+1.6
1,405,570	+		CCNA_01279	0.73	+0.5
1,405,591	-		CCNA_01279	0.76	+1.6
1,405,640	-		CCNA_01279	0.82	+1.1
1,405,659	-		CCNA_01279	0.84	+0.8
1,405,694	+		CCNA_01279	0.89	+1.1
1,405,764	-				+1.2
1,405,809	-				+1.7
1,405,809	-				+1.7
1,405,811	+				-0.7
1,405,811	+				-1.7
1,405,811	+				-2.0
1,405,819	-				-0.3
1,405,819	-				-0.3
1,405,824	-				-0.3
1,405,829	-				-0.7
1,405,870	+				-0.5