Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01032

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01031 and CCNA_01032 are separated by 86 nucleotidesCCNA_01032 and CCNA_01033 overlap by 37 nucleotides CCNA_01031: CCNA_01031 - transporter, major facilitator superfamily, at 1,119,701 to 1,121,353 _01031 CCNA_01032: CCNA_01032 - RNA polymerase ECF-type sigma factor, at 1,121,440 to 1,122,033 _01032 CCNA_01033: CCNA_01033 - FecR family protein, at 1,121,997 to 1,122,992 _01033 Position (kb) 1121 1122 1123Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1120.452 kb on + strand, within CCNA_01031at 1120.458 kb on + strand, within CCNA_01031at 1120.459 kb on - strand, within CCNA_01031at 1120.475 kb on + strand, within CCNA_01031at 1120.477 kb on + strand, within CCNA_01031at 1120.477 kb on + strand, within CCNA_01031at 1120.487 kb on + strand, within CCNA_01031at 1120.492 kb on + strand, within CCNA_01031at 1120.492 kb on + strand, within CCNA_01031at 1120.492 kb on + strand, within CCNA_01031at 1120.499 kb on + strand, within CCNA_01031at 1120.499 kb on + strand, within CCNA_01031at 1120.500 kb on - strand, within CCNA_01031at 1120.500 kb on - strand, within CCNA_01031at 1120.500 kb on - strand, within CCNA_01031at 1120.500 kb on - strand, within CCNA_01031at 1120.500 kb on - strand, within CCNA_01031at 1120.500 kb on - strand, within CCNA_01031at 1120.500 kb on - strand, within CCNA_01031at 1120.500 kb on - strand, within CCNA_01031at 1120.500 kb on - strand, within CCNA_01031at 1120.507 kb on - strand, within CCNA_01031at 1120.538 kb on + strand, within CCNA_01031at 1120.543 kb on + strand, within CCNA_01031at 1120.543 kb on + strand, within CCNA_01031at 1120.543 kb on + strand, within CCNA_01031at 1120.546 kb on - strand, within CCNA_01031at 1120.551 kb on - strand, within CCNA_01031at 1120.551 kb on - strand, within CCNA_01031at 1120.612 kb on + strand, within CCNA_01031at 1120.640 kb on + strand, within CCNA_01031at 1120.648 kb on - strand, within CCNA_01031at 1120.666 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.717 kb on + strand, within CCNA_01031at 1120.722 kb on + strand, within CCNA_01031at 1120.724 kb on + strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strandat 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.725 kb on - strand, within CCNA_01031at 1120.779 kb on + strand, within CCNA_01031at 1120.787 kb on - strand, within CCNA_01031at 1120.798 kb on + strand, within CCNA_01031at 1120.798 kb on + strand, within CCNA_01031at 1120.804 kb on + strand, within CCNA_01031at 1120.806 kb on - strand, within CCNA_01031at 1120.812 kb on - strand, within CCNA_01031at 1120.812 kb on - strand, within CCNA_01031at 1120.812 kb on - strand, within CCNA_01031at 1120.815 kb on + strand, within CCNA_01031at 1120.833 kb on - strand, within CCNA_01031at 1120.840 kb on + strand, within CCNA_01031at 1120.848 kb on - strand, within CCNA_01031at 1120.848 kb on - strand, within CCNA_01031at 1120.863 kb on - strand, within CCNA_01031at 1120.865 kb on - strand, within CCNA_01031at 1120.870 kb on + strand, within CCNA_01031at 1120.878 kb on - strand, within CCNA_01031at 1120.949 kb on + strand, within CCNA_01031at 1120.962 kb on - strand, within CCNA_01031at 1121.002 kb on + strand, within CCNA_01031at 1121.002 kb on + strand, within CCNA_01031at 1121.002 kb on + strand, within CCNA_01031at 1121.010 kb on - strand, within CCNA_01031at 1121.010 kb on - strand, within CCNA_01031at 1121.023 kb on + strand, within CCNA_01031at 1121.093 kb on - strand, within CCNA_01031at 1121.112 kb on - strand, within CCNA_01031at 1121.137 kb on + strand, within CCNA_01031at 1121.145 kb on - strand, within CCNA_01031at 1121.160 kb on + strand, within CCNA_01031at 1121.175 kb on - strand, within CCNA_01031at 1121.192 kb on + strandat 1121.215 kb on - strandat 1121.224 kb on - strandat 1121.230 kb on - strandat 1121.274 kb on - strandat 1121.310 kb on - strandat 1121.324 kb on - strandat 1121.348 kb on + strandat 1121.425 kb on + strandat 1121.425 kb on + strandat 1121.427 kb on + strandat 1121.433 kb on - strandat 1121.433 kb on - strandat 1121.435 kb on - strandat 1121.440 kb on - strandat 1121.464 kb on - strandat 1121.519 kb on + strand, within CCNA_01032at 1121.522 kb on - strand, within CCNA_01032at 1121.524 kb on - strand, within CCNA_01032at 1121.529 kb on + strand, within CCNA_01032at 1121.537 kb on - strand, within CCNA_01032at 1121.542 kb on + strand, within CCNA_01032at 1121.547 kb on + strand, within CCNA_01032at 1121.562 kb on - strand, within CCNA_01032at 1121.575 kb on + strand, within CCNA_01032at 1121.575 kb on + strand, within CCNA_01032at 1121.575 kb on + strand, within CCNA_01032at 1121.583 kb on - strand, within CCNA_01032at 1121.583 kb on - strandat 1121.583 kb on - strand, within CCNA_01032at 1121.583 kb on - strand, within CCNA_01032at 1121.603 kb on + strand, within CCNA_01032at 1121.647 kb on + strand, within CCNA_01032at 1121.647 kb on - strand, within CCNA_01032at 1121.652 kb on + strand, within CCNA_01032at 1121.660 kb on - strand, within CCNA_01032at 1121.683 kb on - strand, within CCNA_01032at 1121.685 kb on + strand, within CCNA_01032at 1121.686 kb on + strand, within CCNA_01032at 1121.686 kb on + strand, within CCNA_01032at 1121.686 kb on + strand, within CCNA_01032at 1121.686 kb on + strand, within CCNA_01032at 1121.694 kb on - strand, within CCNA_01032at 1121.694 kb on - strand, within CCNA_01032at 1121.694 kb on - strand, within CCNA_01032at 1121.694 kb on - strand, within CCNA_01032at 1121.696 kb on + strand, within CCNA_01032at 1121.762 kb on - strand, within CCNA_01032at 1121.778 kb on - strand, within CCNA_01032at 1121.839 kb on - strand, within CCNA_01032at 1121.848 kb on + strand, within CCNA_01032at 1121.870 kb on + strand, within CCNA_01032at 1121.873 kb on - strand, within CCNA_01032at 1121.878 kb on - strand, within CCNA_01032at 1121.894 kb on - strand, within CCNA_01032at 1121.913 kb on + strand, within CCNA_01032at 1121.913 kb on - strand, within CCNA_01032at 1121.921 kb on - strand, within CCNA_01032at 1121.947 kb on - strand, within CCNA_01032at 1121.972 kb on + strand, within CCNA_01032at 1121.973 kb on + strand, within CCNA_01032at 1122.002 kb on - strandat 1122.002 kb on - strandat 1122.012 kb on + strandat 1122.028 kb on + strandat 1122.028 kb on + strandat 1122.028 kb on + strandat 1122.028 kb on + strandat 1122.036 kb on - strandat 1122.038 kb on - strandat 1122.040 kb on + strandat 1122.046 kb on + strandat 1122.052 kb on + strandat 1122.060 kb on - strandat 1122.077 kb on + strandat 1122.100 kb on + strand, within CCNA_01033at 1122.108 kb on + strand, within CCNA_01033at 1122.224 kb on - strand, within CCNA_01033at 1122.269 kb on + strand, within CCNA_01033at 1122.273 kb on + strand, within CCNA_01033at 1122.292 kb on - strand, within CCNA_01033at 1122.326 kb on + strand, within CCNA_01033at 1122.326 kb on + strand, within CCNA_01033at 1122.334 kb on - strand, within CCNA_01033at 1122.350 kb on + strand, within CCNA_01033at 1122.351 kb on + strand, within CCNA_01033at 1122.358 kb on - strand, within CCNA_01033at 1122.379 kb on + strand, within CCNA_01033at 1122.382 kb on + strand, within CCNA_01033at 1122.382 kb on + strand, within CCNA_01033at 1122.387 kb on - strand, within CCNA_01033at 1122.413 kb on + strand, within CCNA_01033at 1122.419 kb on - strand, within CCNA_01033at 1122.419 kb on - strand, within CCNA_01033at 1122.419 kb on - strand, within CCNA_01033at 1122.432 kb on + strand, within CCNA_01033at 1122.456 kb on - strand, within CCNA_01033at 1122.476 kb on - strand, within CCNA_01033at 1122.499 kb on - strand, within CCNA_01033at 1122.510 kb on + strand, within CCNA_01033at 1122.518 kb on - strand, within CCNA_01033at 1122.545 kb on + strand, within CCNA_01033at 1122.553 kb on - strandat 1122.609 kb on + strand, within CCNA_01033at 1122.643 kb on + strand, within CCNA_01033at 1122.665 kb on - strand, within CCNA_01033at 1122.667 kb on + strand, within CCNA_01033at 1122.680 kb on + strand, within CCNA_01033at 1122.692 kb on + strand, within CCNA_01033at 1122.692 kb on + strand, within CCNA_01033at 1122.700 kb on - strand, within CCNA_01033at 1122.700 kb on - strand, within CCNA_01033at 1122.731 kb on + strand, within CCNA_01033at 1122.760 kb on - strand, within CCNA_01033at 1122.783 kb on + strand, within CCNA_01033at 1122.790 kb on + strand, within CCNA_01033at 1122.818 kb on - strand, within CCNA_01033at 1122.864 kb on + strand, within CCNA_01033at 1122.877 kb on - strand, within CCNA_01033at 1122.892 kb on + strand, within CCNA_01033at 1122.900 kb on - strandat 1122.911 kb on + strandat 1122.918 kb on + strandat 1122.938 kb on + strandat 1122.995 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Doxycycline hyclate 0.0001 mg/ml
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1,120,452 + CCNA_01031 0.45 -0.7
1,120,458 + CCNA_01031 0.46 -1.3
1,120,459 - CCNA_01031 0.46 -0.5
1,120,475 + CCNA_01031 0.47 +0.4
1,120,477 + CCNA_01031 0.47 -1.6
1,120,477 + CCNA_01031 0.47 +0.2
1,120,487 + CCNA_01031 0.48 -0.6
1,120,492 + CCNA_01031 0.48 -1.0
1,120,492 + CCNA_01031 0.48 +0.2
1,120,492 + CCNA_01031 0.48 -1.2
1,120,499 + CCNA_01031 0.48 -0.9
1,120,499 + CCNA_01031 0.48 -2.0
1,120,500 - CCNA_01031 0.48 +1.1
1,120,500 - CCNA_01031 0.48 +0.7
1,120,500 - CCNA_01031 0.48 -1.0
1,120,500 - CCNA_01031 0.48 -0.4
1,120,500 - CCNA_01031 0.48 +1.7
1,120,500 - CCNA_01031 0.48 +2.7
1,120,500 - CCNA_01031 0.48 +0.4
1,120,500 - CCNA_01031 0.48 -3.2
1,120,500 - CCNA_01031 0.48 +0.5
1,120,507 - CCNA_01031 0.49 -1.5
1,120,538 + CCNA_01031 0.51 -1.1
1,120,543 + CCNA_01031 0.51 -2.8
1,120,543 + CCNA_01031 0.51 -0.1
1,120,543 + CCNA_01031 0.51 -0.6
1,120,546 - CCNA_01031 0.51 +0.2
1,120,551 - CCNA_01031 0.51 -0.6
1,120,551 - CCNA_01031 0.51 -0.7
1,120,612 + CCNA_01031 0.55 +1.7
1,120,640 + CCNA_01031 0.57 +1.7
1,120,648 - CCNA_01031 0.57 -1.3
1,120,666 + CCNA_01031 0.58 +0.5
1,120,717 + CCNA_01031 0.61 -1.4
1,120,717 + CCNA_01031 0.61 -1.1
1,120,717 + CCNA_01031 0.61 -0.7
1,120,717 + CCNA_01031 0.61 +0.6
1,120,717 + CCNA_01031 0.61 +0.5
1,120,717 + CCNA_01031 0.61 +0.5
1,120,717 + CCNA_01031 0.61 +0.2
1,120,717 + CCNA_01031 0.61 +1.7
1,120,717 + CCNA_01031 0.61 -1.1
1,120,717 + CCNA_01031 0.61 +1.1
1,120,722 + CCNA_01031 0.62 -0.3
1,120,724 + CCNA_01031 0.62 -1.4
1,120,725 - CCNA_01031 0.62 -1.6
1,120,725 - CCNA_01031 0.62 -1.1
1,120,725 - CCNA_01031 0.62 -0.2
1,120,725 - CCNA_01031 0.62 -0.9
1,120,725 - CCNA_01031 0.62 +0.1
1,120,725 - +0.9
1,120,725 - CCNA_01031 0.62 -1.0
1,120,725 - CCNA_01031 0.62 -1.8
1,120,725 - CCNA_01031 0.62 -1.4
1,120,725 - CCNA_01031 0.62 -1.7
1,120,725 - CCNA_01031 0.62 -1.2
1,120,725 - CCNA_01031 0.62 -1.1
1,120,779 + CCNA_01031 0.65 -0.4
1,120,787 - CCNA_01031 0.66 +1.9
1,120,798 + CCNA_01031 0.66 -1.8
1,120,798 + CCNA_01031 0.66 -1.1
1,120,804 + CCNA_01031 0.67 +0.7
1,120,806 - CCNA_01031 0.67 +0.7
1,120,812 - CCNA_01031 0.67 -0.8
1,120,812 - CCNA_01031 0.67 -0.5
1,120,812 - CCNA_01031 0.67 -1.5
1,120,815 + CCNA_01031 0.67 +0.0
1,120,833 - CCNA_01031 0.68 -0.2
1,120,840 + CCNA_01031 0.69 +0.8
1,120,848 - CCNA_01031 0.69 -0.9
1,120,848 - CCNA_01031 0.69 -0.7
1,120,863 - CCNA_01031 0.70 -1.3
1,120,865 - CCNA_01031 0.70 -1.4
1,120,870 + CCNA_01031 0.71 +0.4
1,120,878 - CCNA_01031 0.71 -1.6
1,120,949 + CCNA_01031 0.75 -0.2
1,120,962 - CCNA_01031 0.76 -1.4
1,121,002 + CCNA_01031 0.79 -0.1
1,121,002 + CCNA_01031 0.79 +0.4
1,121,002 + CCNA_01031 0.79 -0.6
1,121,010 - CCNA_01031 0.79 -0.2
1,121,010 - CCNA_01031 0.79 -0.2
1,121,023 + CCNA_01031 0.80 -0.2
1,121,093 - CCNA_01031 0.84 -0.3
1,121,112 - CCNA_01031 0.85 -0.6
1,121,137 + CCNA_01031 0.87 -1.6
1,121,145 - CCNA_01031 0.87 -0.2
1,121,160 + CCNA_01031 0.88 +0.1
1,121,175 - CCNA_01031 0.89 -0.5
1,121,192 + +0.8
1,121,215 - -1.7
1,121,224 - -2.6
1,121,230 - -0.0
1,121,274 - +1.7
1,121,310 - +1.2
1,121,324 - -0.4
1,121,348 + +1.3
1,121,425 + +1.0
1,121,425 + +1.1
1,121,427 + -2.2
1,121,433 - -0.1
1,121,433 - -0.1
1,121,435 - +0.1
1,121,440 - +1.8
1,121,464 - +0.9
1,121,519 + CCNA_01032 0.13 +0.1
1,121,522 - CCNA_01032 0.14 -0.3
1,121,524 - CCNA_01032 0.14 +0.5
1,121,529 + CCNA_01032 0.15 -0.8
1,121,537 - CCNA_01032 0.16 -0.9
1,121,542 + CCNA_01032 0.17 +1.4
1,121,547 + CCNA_01032 0.18 -0.3
1,121,562 - CCNA_01032 0.21 -1.1
1,121,575 + CCNA_01032 0.23 -1.0
1,121,575 + CCNA_01032 0.23 -1.2
1,121,575 + CCNA_01032 0.23 +2.1
1,121,583 - CCNA_01032 0.24 -0.4
1,121,583 - +3.1
1,121,583 - CCNA_01032 0.24 -1.5
1,121,583 - CCNA_01032 0.24 -2.3
1,121,603 + CCNA_01032 0.27 -0.7
1,121,647 + CCNA_01032 0.35 -0.7
1,121,647 - CCNA_01032 0.35 -0.4
1,121,652 + CCNA_01032 0.36 -1.4
1,121,660 - CCNA_01032 0.37 -0.8
1,121,683 - CCNA_01032 0.41 -0.1
1,121,685 + CCNA_01032 0.41 -0.7
1,121,686 + CCNA_01032 0.41 +0.6
1,121,686 + CCNA_01032 0.41 -0.4
1,121,686 + CCNA_01032 0.41 -1.1
1,121,686 + CCNA_01032 0.41 -0.4
1,121,694 - CCNA_01032 0.43 -1.0
1,121,694 - CCNA_01032 0.43 -1.3
1,121,694 - CCNA_01032 0.43 -0.9
1,121,694 - CCNA_01032 0.43 -0.6
1,121,696 + CCNA_01032 0.43 -2.0
1,121,762 - CCNA_01032 0.54 +2.0
1,121,778 - CCNA_01032 0.57 -0.1
1,121,839 - CCNA_01032 0.67 +0.5
1,121,848 + CCNA_01032 0.69 +0.2
1,121,870 + CCNA_01032 0.72 -0.1
1,121,873 - CCNA_01032 0.73 -0.7
1,121,878 - CCNA_01032 0.74 -0.1
1,121,894 - CCNA_01032 0.76 -1.1
1,121,913 + CCNA_01032 0.80 +0.5
1,121,913 - CCNA_01032 0.80 +1.1
1,121,921 - CCNA_01032 0.81 -1.5
1,121,947 - CCNA_01032 0.85 -2.1
1,121,972 + CCNA_01032 0.90 +1.4
1,121,973 + CCNA_01032 0.90 +0.3
1,122,002 - +0.6
1,122,002 - -0.6
1,122,012 + +0.3
1,122,028 + +1.4
1,122,028 + +1.4
1,122,028 + +1.8
1,122,028 + +1.4
1,122,036 - -0.6
1,122,038 - -0.1
1,122,040 + +1.6
1,122,046 + +0.9
1,122,052 + +2.1
1,122,060 - +0.2
1,122,077 + +1.6
1,122,100 + CCNA_01033 0.10 +1.9
1,122,108 + CCNA_01033 0.11 +2.2
1,122,224 - CCNA_01033 0.23 -0.8
1,122,269 + CCNA_01033 0.27 -0.5
1,122,273 + CCNA_01033 0.28 +0.1
1,122,292 - CCNA_01033 0.30 -2.7
1,122,326 + CCNA_01033 0.33 +0.4
1,122,326 + CCNA_01033 0.33 +0.6
1,122,334 - CCNA_01033 0.34 +0.1
1,122,350 + CCNA_01033 0.35 +0.6
1,122,351 + CCNA_01033 0.36 +1.1
1,122,358 - CCNA_01033 0.36 -1.1
1,122,379 + CCNA_01033 0.38 +1.4
1,122,382 + CCNA_01033 0.39 +0.7
1,122,382 + CCNA_01033 0.39 +0.3
1,122,387 - CCNA_01033 0.39 -1.8
1,122,413 + CCNA_01033 0.42 +0.7
1,122,419 - CCNA_01033 0.42 -2.3
1,122,419 - CCNA_01033 0.42 -0.3
1,122,419 - CCNA_01033 0.42 -1.8
1,122,432 + CCNA_01033 0.44 +0.3
1,122,456 - CCNA_01033 0.46 -0.7
1,122,476 - CCNA_01033 0.48 -0.6
1,122,499 - CCNA_01033 0.50 +1.4
1,122,510 + CCNA_01033 0.52 +1.2
1,122,518 - CCNA_01033 0.52 +1.1
1,122,545 + CCNA_01033 0.55 +1.3
1,122,553 - +2.1
1,122,609 + CCNA_01033 0.61 +0.8
1,122,643 + CCNA_01033 0.65 +0.7
1,122,665 - CCNA_01033 0.67 -1.5
1,122,667 + CCNA_01033 0.67 +1.2
1,122,680 + CCNA_01033 0.69 +0.0
1,122,692 + CCNA_01033 0.70 +1.2
1,122,692 + CCNA_01033 0.70 +1.4
1,122,700 - CCNA_01033 0.71 +1.1
1,122,700 - CCNA_01033 0.71 -0.7
1,122,731 + CCNA_01033 0.74 +1.1
1,122,760 - CCNA_01033 0.77 +0.2
1,122,783 + CCNA_01033 0.79 +1.5
1,122,790 + CCNA_01033 0.80 +0.6
1,122,818 - CCNA_01033 0.82 -0.8
1,122,864 + CCNA_01033 0.87 +0.9
1,122,877 - CCNA_01033 0.88 +0.5
1,122,892 + CCNA_01033 0.90 +1.6
1,122,900 - +2.4
1,122,911 + +1.1
1,122,918 + +1.0
1,122,938 + +1.5
1,122,995 - -1.1

Or see this region's nucleotide sequence