Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00539

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00538 and CCNA_00539 are separated by 28 nucleotidesCCNA_00539 and CCNA_00540 are separated by 194 nucleotides CCNA_00538: CCNA_00538 - methyl-accepting chemotaxis protein, at 556,424 to 558,220 _00538 CCNA_00539: CCNA_00539 - salicylate hydroxylase, at 558,249 to 559,709 _00539 CCNA_00540: CCNA_00540 - coproporphyrinogen III oxidase, at 559,904 to 560,776 _00540 Position (kb) 558 559 560Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 557.254 kb on + strand, within CCNA_00538at 557.262 kb on - strand, within CCNA_00538at 557.269 kb on + strand, within CCNA_00538at 557.269 kb on + strand, within CCNA_00538at 557.284 kb on - strand, within CCNA_00538at 557.302 kb on - strand, within CCNA_00538at 557.309 kb on + strand, within CCNA_00538at 557.339 kb on - strand, within CCNA_00538at 557.392 kb on + strand, within CCNA_00538at 557.404 kb on + strand, within CCNA_00538at 557.462 kb on + strand, within CCNA_00538at 557.491 kb on - strand, within CCNA_00538at 557.512 kb on + strand, within CCNA_00538at 557.520 kb on + strand, within CCNA_00538at 557.541 kb on + strand, within CCNA_00538at 557.549 kb on - strand, within CCNA_00538at 557.549 kb on - strand, within CCNA_00538at 557.575 kb on - strand, within CCNA_00538at 557.662 kb on - strand, within CCNA_00538at 557.698 kb on + strand, within CCNA_00538at 557.711 kb on - strand, within CCNA_00538at 557.714 kb on + strand, within CCNA_00538at 557.756 kb on + strand, within CCNA_00538at 557.766 kb on + strand, within CCNA_00538at 557.787 kb on - strand, within CCNA_00538at 557.788 kb on + strand, within CCNA_00538at 557.788 kb on + strand, within CCNA_00538at 557.796 kb on - strand, within CCNA_00538at 557.884 kb on + strand, within CCNA_00538at 557.887 kb on + strand, within CCNA_00538at 557.903 kb on + strand, within CCNA_00538at 557.963 kb on - strand, within CCNA_00538at 558.032 kb on + strand, within CCNA_00538at 558.035 kb on - strand, within CCNA_00538at 558.039 kb on + strand, within CCNA_00538at 558.040 kb on - strand, within CCNA_00538at 558.045 kb on + strandat 558.050 kb on + strandat 558.053 kb on - strandat 558.092 kb on - strandat 558.118 kb on + strandat 558.123 kb on - strandat 558.132 kb on + strandat 558.133 kb on + strandat 558.146 kb on - strandat 558.162 kb on + strandat 558.163 kb on + strandat 558.172 kb on + strandat 558.190 kb on + strandat 558.192 kb on + strandat 558.200 kb on - strandat 558.234 kb on - strandat 558.280 kb on + strandat 558.292 kb on - strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.346 kb on + strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.354 kb on - strandat 558.387 kb on - strandat 558.406 kb on + strand, within CCNA_00539at 558.500 kb on + strand, within CCNA_00539at 558.500 kb on + strand, within CCNA_00539at 558.500 kb on + strand, within CCNA_00539at 558.500 kb on + strand, within CCNA_00539at 558.502 kb on - strand, within CCNA_00539at 558.508 kb on - strand, within CCNA_00539at 558.565 kb on + strand, within CCNA_00539at 558.582 kb on + strand, within CCNA_00539at 558.582 kb on + strand, within CCNA_00539at 558.582 kb on + strand, within CCNA_00539at 558.582 kb on + strand, within CCNA_00539at 558.590 kb on - strand, within CCNA_00539at 558.590 kb on - strand, within CCNA_00539at 558.608 kb on + strand, within CCNA_00539at 558.637 kb on - strand, within CCNA_00539at 558.683 kb on - strand, within CCNA_00539at 558.684 kb on + strand, within CCNA_00539at 558.692 kb on - strand, within CCNA_00539at 558.709 kb on + strand, within CCNA_00539at 558.709 kb on + strand, within CCNA_00539at 558.712 kb on - strand, within CCNA_00539at 558.717 kb on - strand, within CCNA_00539at 558.741 kb on + strand, within CCNA_00539at 558.741 kb on + strand, within CCNA_00539at 558.749 kb on - strand, within CCNA_00539at 558.820 kb on - strand, within CCNA_00539at 558.834 kb on + strand, within CCNA_00539at 558.841 kb on + strand, within CCNA_00539at 558.850 kb on + strand, within CCNA_00539at 558.857 kb on - strand, within CCNA_00539at 558.951 kb on + strand, within CCNA_00539at 558.959 kb on - strand, within CCNA_00539at 558.959 kb on - strand, within CCNA_00539at 558.967 kb on - strand, within CCNA_00539at 558.983 kb on + strand, within CCNA_00539at 559.009 kb on + strand, within CCNA_00539at 559.017 kb on - strand, within CCNA_00539at 559.022 kb on - strand, within CCNA_00539at 559.023 kb on + strand, within CCNA_00539at 559.030 kb on + strand, within CCNA_00539at 559.038 kb on - strand, within CCNA_00539at 559.050 kb on + strand, within CCNA_00539at 559.080 kb on - strand, within CCNA_00539at 559.081 kb on + strand, within CCNA_00539at 559.089 kb on - strand, within CCNA_00539at 559.089 kb on - strand, within CCNA_00539at 559.089 kb on - strand, within CCNA_00539at 559.109 kb on - strand, within CCNA_00539at 559.169 kb on + strand, within CCNA_00539at 559.178 kb on - strand, within CCNA_00539at 559.201 kb on - strand, within CCNA_00539at 559.216 kb on + strand, within CCNA_00539at 559.236 kb on - strand, within CCNA_00539at 559.247 kb on - strand, within CCNA_00539at 559.247 kb on - strand, within CCNA_00539at 559.248 kb on - strand, within CCNA_00539at 559.252 kb on + strand, within CCNA_00539at 559.268 kb on + strand, within CCNA_00539at 559.268 kb on + strand, within CCNA_00539at 559.273 kb on + strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.276 kb on - strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.278 kb on + strand, within CCNA_00539at 559.281 kb on - strand, within CCNA_00539at 559.281 kb on - strand, within CCNA_00539at 559.286 kb on - strand, within CCNA_00539at 559.286 kb on - strand, within CCNA_00539at 559.286 kb on - strand, within CCNA_00539at 559.286 kb on - strand, within CCNA_00539at 559.308 kb on - strand, within CCNA_00539at 559.314 kb on + strand, within CCNA_00539at 559.314 kb on + strand, within CCNA_00539at 559.314 kb on + strand, within CCNA_00539at 559.322 kb on - strand, within CCNA_00539at 559.328 kb on - strand, within CCNA_00539at 559.341 kb on + strand, within CCNA_00539at 559.341 kb on + strand, within CCNA_00539at 559.381 kb on - strand, within CCNA_00539at 559.381 kb on - strand, within CCNA_00539at 559.393 kb on + strand, within CCNA_00539at 559.412 kb on + strand, within CCNA_00539at 559.412 kb on + strand, within CCNA_00539at 559.422 kb on + strand, within CCNA_00539at 559.425 kb on - strand, within CCNA_00539at 559.448 kb on - strand, within CCNA_00539at 559.463 kb on + strand, within CCNA_00539at 559.496 kb on + strand, within CCNA_00539at 559.522 kb on - strand, within CCNA_00539at 559.550 kb on + strand, within CCNA_00539at 559.552 kb on + strand, within CCNA_00539at 559.559 kb on + strand, within CCNA_00539at 559.585 kb on + strandat 559.593 kb on + strandat 559.606 kb on - strandat 559.610 kb on - strandat 559.634 kb on - strandat 559.634 kb on - strandat 559.634 kb on - strandat 559.671 kb on + strandat 559.671 kb on + strandat 559.676 kb on + strandat 559.677 kb on + strandat 559.677 kb on + strandat 559.679 kb on - strandat 559.680 kb on - strandat 559.684 kb on - strandat 559.685 kb on - strandat 559.685 kb on - strandat 559.761 kb on + strandat 559.761 kb on + strandat 559.761 kb on + strandat 559.769 kb on - strandat 559.769 kb on - strandat 559.771 kb on + strandat 559.779 kb on + strandat 559.787 kb on - strandat 559.792 kb on + strandat 559.800 kb on - strandat 559.807 kb on + strandat 559.880 kb on - strandat 559.885 kb on + strandat 559.908 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Doxycycline hyclate 0.0001 mg/ml
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557,254 + CCNA_00538 0.46 +1.3
557,262 - CCNA_00538 0.47 -0.8
557,269 + CCNA_00538 0.47 -0.2
557,269 + CCNA_00538 0.47 -0.3
557,284 - CCNA_00538 0.48 -0.7
557,302 - CCNA_00538 0.49 -1.3
557,309 + CCNA_00538 0.49 +0.5
557,339 - CCNA_00538 0.51 +0.2
557,392 + CCNA_00538 0.54 -1.2
557,404 + CCNA_00538 0.55 -0.6
557,462 + CCNA_00538 0.58 -0.3
557,491 - CCNA_00538 0.59 +0.3
557,512 + CCNA_00538 0.61 +0.9
557,520 + CCNA_00538 0.61 -0.3
557,541 + CCNA_00538 0.62 +0.3
557,549 - CCNA_00538 0.63 +1.2
557,549 - CCNA_00538 0.63 -0.5
557,575 - CCNA_00538 0.64 +0.6
557,662 - CCNA_00538 0.69 -1.0
557,698 + CCNA_00538 0.71 +0.8
557,711 - CCNA_00538 0.72 +0.9
557,714 + CCNA_00538 0.72 -1.9
557,756 + CCNA_00538 0.74 +1.6
557,766 + CCNA_00538 0.75 -0.6
557,787 - CCNA_00538 0.76 +0.6
557,788 + CCNA_00538 0.76 +2.2
557,788 + CCNA_00538 0.76 +0.5
557,796 - CCNA_00538 0.76 -0.9
557,884 + CCNA_00538 0.81 +0.3
557,887 + CCNA_00538 0.81 +0.6
557,903 + CCNA_00538 0.82 +0.6
557,963 - CCNA_00538 0.86 -1.0
558,032 + CCNA_00538 0.89 +0.2
558,035 - CCNA_00538 0.90 -0.9
558,039 + CCNA_00538 0.90 -0.2
558,040 - CCNA_00538 0.90 +1.0
558,045 + +1.1
558,050 + +0.3
558,053 - +0.8
558,092 - -1.0
558,118 + +0.3
558,123 - -1.1
558,132 + -0.5
558,133 + -0.4
558,146 - +0.6
558,162 + +1.1
558,163 + -0.0
558,172 + -0.4
558,190 + +1.6
558,192 + +0.5
558,200 - +1.1
558,234 - +1.1
558,280 + +0.1
558,292 - +0.6
558,340 + +0.3
558,340 + +1.1
558,340 + +1.9
558,340 + +0.7
558,340 + -2.2
558,340 + -1.4
558,340 + +0.1
558,340 + +0.9
558,346 + -0.6
558,348 - +1.5
558,348 - +0.5
558,348 - +0.2
558,348 - +2.6
558,348 - +1.3
558,348 - -0.3
558,354 - -1.1
558,387 - +0.8
558,406 + CCNA_00539 0.11 -0.9
558,500 + CCNA_00539 0.17 -0.5
558,500 + CCNA_00539 0.17 +0.5
558,500 + CCNA_00539 0.17 -0.8
558,500 + CCNA_00539 0.17 -0.4
558,502 - CCNA_00539 0.17 -1.0
558,508 - CCNA_00539 0.18 -2.3
558,565 + CCNA_00539 0.22 +0.8
558,582 + CCNA_00539 0.23 -1.9
558,582 + CCNA_00539 0.23 -0.2
558,582 + CCNA_00539 0.23 +0.3
558,582 + CCNA_00539 0.23 -0.2
558,590 - CCNA_00539 0.23 -0.5
558,590 - CCNA_00539 0.23 +0.8
558,608 + CCNA_00539 0.25 -1.0
558,637 - CCNA_00539 0.27 +0.8
558,683 - CCNA_00539 0.30 -0.6
558,684 + CCNA_00539 0.30 -1.0
558,692 - CCNA_00539 0.30 -1.6
558,709 + CCNA_00539 0.31 +0.4
558,709 + CCNA_00539 0.31 -1.2
558,712 - CCNA_00539 0.32 -1.0
558,717 - CCNA_00539 0.32 +0.6
558,741 + CCNA_00539 0.34 -1.4
558,741 + CCNA_00539 0.34 -0.8
558,749 - CCNA_00539 0.34 -1.2
558,820 - CCNA_00539 0.39 +1.8
558,834 + CCNA_00539 0.40 +0.0
558,841 + CCNA_00539 0.41 -1.0
558,850 + CCNA_00539 0.41 +0.2
558,857 - CCNA_00539 0.42 -0.7
558,951 + CCNA_00539 0.48 -1.0
558,959 - CCNA_00539 0.49 +1.5
558,959 - CCNA_00539 0.49 +1.2
558,967 - CCNA_00539 0.49 +0.4
558,983 + CCNA_00539 0.50 +0.4
559,009 + CCNA_00539 0.52 -0.8
559,017 - CCNA_00539 0.53 -0.3
559,022 - CCNA_00539 0.53 -1.5
559,023 + CCNA_00539 0.53 +1.2
559,030 + CCNA_00539 0.53 -0.9
559,038 - CCNA_00539 0.54 +3.9
559,050 + CCNA_00539 0.55 +0.3
559,080 - CCNA_00539 0.57 +0.1
559,081 + CCNA_00539 0.57 +0.1
559,089 - CCNA_00539 0.57 +2.6
559,089 - CCNA_00539 0.57 -0.4
559,089 - CCNA_00539 0.57 +0.0
559,109 - CCNA_00539 0.59 -0.5
559,169 + CCNA_00539 0.63 -2.2
559,178 - CCNA_00539 0.64 -1.2
559,201 - CCNA_00539 0.65 -1.6
559,216 + CCNA_00539 0.66 +1.3
559,236 - CCNA_00539 0.68 -1.1
559,247 - CCNA_00539 0.68 +0.9
559,247 - CCNA_00539 0.68 +0.4
559,248 - CCNA_00539 0.68 -0.8
559,252 + CCNA_00539 0.69 -1.6
559,268 + CCNA_00539 0.70 -0.5
559,268 + CCNA_00539 0.70 -0.0
559,273 + CCNA_00539 0.70 +0.3
559,276 - CCNA_00539 0.70 +1.1
559,276 - CCNA_00539 0.70 +1.3
559,276 - CCNA_00539 0.70 +1.7
559,276 - CCNA_00539 0.70 +1.6
559,276 - CCNA_00539 0.70 +1.7
559,278 + CCNA_00539 0.70 +1.9
559,278 + CCNA_00539 0.70 -1.1
559,278 + CCNA_00539 0.70 -0.6
559,278 + CCNA_00539 0.70 -2.0
559,278 + CCNA_00539 0.70 -0.1
559,278 + CCNA_00539 0.70 -0.5
559,281 - CCNA_00539 0.71 +0.4
559,281 - CCNA_00539 0.71 -1.0
559,286 - CCNA_00539 0.71 +1.1
559,286 - CCNA_00539 0.71 +1.1
559,286 - CCNA_00539 0.71 -1.0
559,286 - CCNA_00539 0.71 +1.9
559,308 - CCNA_00539 0.72 +0.1
559,314 + CCNA_00539 0.73 +0.1
559,314 + CCNA_00539 0.73 -0.2
559,314 + CCNA_00539 0.73 +0.3
559,322 - CCNA_00539 0.73 -0.1
559,328 - CCNA_00539 0.74 -0.0
559,341 + CCNA_00539 0.75 -0.5
559,341 + CCNA_00539 0.75 +0.3
559,381 - CCNA_00539 0.77 -1.1
559,381 - CCNA_00539 0.77 -0.4
559,393 + CCNA_00539 0.78 +1.3
559,412 + CCNA_00539 0.80 +0.4
559,412 + CCNA_00539 0.80 +0.3
559,422 + CCNA_00539 0.80 +0.4
559,425 - CCNA_00539 0.80 +0.6
559,448 - CCNA_00539 0.82 -0.0
559,463 + CCNA_00539 0.83 +0.1
559,496 + CCNA_00539 0.85 +0.0
559,522 - CCNA_00539 0.87 -0.4
559,550 + CCNA_00539 0.89 -1.0
559,552 + CCNA_00539 0.89 +0.4
559,559 + CCNA_00539 0.90 +0.7
559,585 + -0.1
559,593 + -0.6
559,606 - -0.9
559,610 - +0.1
559,634 - +0.1
559,634 - -1.6
559,634 - -0.9
559,671 + -0.2
559,671 + -0.2
559,676 + -1.2
559,677 + -1.5
559,677 + +0.0
559,679 - -2.0
559,680 - +1.0
559,684 - -1.1
559,685 - +1.1
559,685 - +0.4
559,761 + -0.2
559,761 + +0.0
559,761 + +1.0
559,769 - -1.7
559,769 - +0.6
559,771 + -0.7
559,779 + -0.2
559,787 - +0.3
559,792 + +1.8
559,800 - -0.0
559,807 + +0.0
559,880 - +2.6
559,885 + -1.9
559,908 + -2.3

Or see this region's nucleotide sequence