Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00538

Experiment: PYE with Doxycycline hyclate 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00537 and CCNA_00538 are separated by 218 nucleotidesCCNA_00538 and CCNA_00539 are separated by 28 nucleotides CCNA_00537: CCNA_00537 - DNA-directed RNA polymerase beta, at 552,015 to 556,205 _00537 CCNA_00538: CCNA_00538 - methyl-accepting chemotaxis protein, at 556,424 to 558,220 _00538 CCNA_00539: CCNA_00539 - salicylate hydroxylase, at 558,249 to 559,709 _00539 Position (kb) 556 557 558 559Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 556.087 kb on + strandat 556.109 kb on + strandat 556.142 kb on - strandat 556.226 kb on - strandat 556.232 kb on + strandat 556.289 kb on + strandat 556.297 kb on - strandat 556.418 kb on + strandat 556.440 kb on + strandat 556.448 kb on - strandat 556.507 kb on - strandat 556.509 kb on + strandat 556.612 kb on + strand, within CCNA_00538at 556.612 kb on + strand, within CCNA_00538at 556.615 kb on - strand, within CCNA_00538at 556.624 kb on + strand, within CCNA_00538at 556.689 kb on + strand, within CCNA_00538at 556.689 kb on + strand, within CCNA_00538at 556.689 kb on + strand, within CCNA_00538at 556.697 kb on - strand, within CCNA_00538at 556.721 kb on - strand, within CCNA_00538at 556.738 kb on + strand, within CCNA_00538at 556.738 kb on + strand, within CCNA_00538at 556.780 kb on + strand, within CCNA_00538at 556.788 kb on - strand, within CCNA_00538at 556.804 kb on + strand, within CCNA_00538at 556.804 kb on + strand, within CCNA_00538at 556.812 kb on - strand, within CCNA_00538at 556.817 kb on - strandat 556.838 kb on + strand, within CCNA_00538at 556.838 kb on + strand, within CCNA_00538at 556.838 kb on + strand, within CCNA_00538at 556.838 kb on + strand, within CCNA_00538at 556.838 kb on + strand, within CCNA_00538at 556.838 kb on + strand, within CCNA_00538at 556.840 kb on + strand, within CCNA_00538at 556.846 kb on - strand, within CCNA_00538at 556.896 kb on + strand, within CCNA_00538at 556.925 kb on + strand, within CCNA_00538at 556.933 kb on + strandat 556.935 kb on - strand, within CCNA_00538at 556.941 kb on - strand, within CCNA_00538at 556.941 kb on - strand, within CCNA_00538at 556.980 kb on + strand, within CCNA_00538at 556.985 kb on + strand, within CCNA_00538at 556.988 kb on - strand, within CCNA_00538at 556.990 kb on + strand, within CCNA_00538at 557.002 kb on + strand, within CCNA_00538at 557.028 kb on + strand, within CCNA_00538at 557.062 kb on + strand, within CCNA_00538at 557.070 kb on - strand, within CCNA_00538at 557.124 kb on + strand, within CCNA_00538at 557.154 kb on - strand, within CCNA_00538at 557.173 kb on + strand, within CCNA_00538at 557.181 kb on - strand, within CCNA_00538at 557.184 kb on + strand, within CCNA_00538at 557.194 kb on - strand, within CCNA_00538at 557.194 kb on - strand, within CCNA_00538at 557.236 kb on + strand, within CCNA_00538at 557.236 kb on + strand, within CCNA_00538at 557.236 kb on + strand, within CCNA_00538at 557.244 kb on - strand, within CCNA_00538at 557.254 kb on + strand, within CCNA_00538at 557.262 kb on - strand, within CCNA_00538at 557.269 kb on + strand, within CCNA_00538at 557.269 kb on + strand, within CCNA_00538at 557.284 kb on - strand, within CCNA_00538at 557.302 kb on - strand, within CCNA_00538at 557.309 kb on + strand, within CCNA_00538at 557.339 kb on - strand, within CCNA_00538at 557.392 kb on + strand, within CCNA_00538at 557.404 kb on + strand, within CCNA_00538at 557.462 kb on + strand, within CCNA_00538at 557.491 kb on - strand, within CCNA_00538at 557.512 kb on + strand, within CCNA_00538at 557.520 kb on + strand, within CCNA_00538at 557.541 kb on + strand, within CCNA_00538at 557.549 kb on - strand, within CCNA_00538at 557.549 kb on - strand, within CCNA_00538at 557.575 kb on - strand, within CCNA_00538at 557.662 kb on - strand, within CCNA_00538at 557.698 kb on + strand, within CCNA_00538at 557.711 kb on - strand, within CCNA_00538at 557.714 kb on + strand, within CCNA_00538at 557.756 kb on + strand, within CCNA_00538at 557.766 kb on + strand, within CCNA_00538at 557.787 kb on - strand, within CCNA_00538at 557.788 kb on + strand, within CCNA_00538at 557.788 kb on + strand, within CCNA_00538at 557.796 kb on - strand, within CCNA_00538at 557.884 kb on + strand, within CCNA_00538at 557.887 kb on + strand, within CCNA_00538at 557.903 kb on + strand, within CCNA_00538at 557.963 kb on - strand, within CCNA_00538at 558.032 kb on + strand, within CCNA_00538at 558.035 kb on - strand, within CCNA_00538at 558.039 kb on + strand, within CCNA_00538at 558.040 kb on - strand, within CCNA_00538at 558.045 kb on + strandat 558.050 kb on + strandat 558.053 kb on - strandat 558.092 kb on - strandat 558.118 kb on + strandat 558.123 kb on - strandat 558.132 kb on + strandat 558.133 kb on + strandat 558.146 kb on - strandat 558.162 kb on + strandat 558.163 kb on + strandat 558.172 kb on + strandat 558.190 kb on + strandat 558.192 kb on + strandat 558.200 kb on - strandat 558.234 kb on - strandat 558.280 kb on + strandat 558.292 kb on - strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.340 kb on + strandat 558.346 kb on + strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.348 kb on - strandat 558.354 kb on - strandat 558.387 kb on - strandat 558.406 kb on + strand, within CCNA_00539at 558.500 kb on + strand, within CCNA_00539at 558.500 kb on + strand, within CCNA_00539at 558.500 kb on + strand, within CCNA_00539at 558.500 kb on + strand, within CCNA_00539at 558.502 kb on - strand, within CCNA_00539at 558.508 kb on - strand, within CCNA_00539at 558.565 kb on + strand, within CCNA_00539at 558.582 kb on + strand, within CCNA_00539at 558.582 kb on + strand, within CCNA_00539at 558.582 kb on + strand, within CCNA_00539at 558.582 kb on + strand, within CCNA_00539at 558.590 kb on - strand, within CCNA_00539at 558.590 kb on - strand, within CCNA_00539at 558.608 kb on + strand, within CCNA_00539at 558.637 kb on - strand, within CCNA_00539at 558.683 kb on - strand, within CCNA_00539at 558.684 kb on + strand, within CCNA_00539at 558.692 kb on - strand, within CCNA_00539at 558.709 kb on + strand, within CCNA_00539at 558.709 kb on + strand, within CCNA_00539at 558.712 kb on - strand, within CCNA_00539at 558.717 kb on - strand, within CCNA_00539at 558.741 kb on + strand, within CCNA_00539at 558.741 kb on + strand, within CCNA_00539at 558.749 kb on - strand, within CCNA_00539at 558.820 kb on - strand, within CCNA_00539at 558.834 kb on + strand, within CCNA_00539at 558.841 kb on + strand, within CCNA_00539at 558.850 kb on + strand, within CCNA_00539at 558.857 kb on - strand, within CCNA_00539at 558.951 kb on + strand, within CCNA_00539at 558.959 kb on - strand, within CCNA_00539at 558.959 kb on - strand, within CCNA_00539at 558.967 kb on - strand, within CCNA_00539at 558.983 kb on + strand, within CCNA_00539at 559.009 kb on + strand, within CCNA_00539at 559.017 kb on - strand, within CCNA_00539at 559.022 kb on - strand, within CCNA_00539at 559.023 kb on + strand, within CCNA_00539at 559.030 kb on + strand, within CCNA_00539at 559.038 kb on - strand, within CCNA_00539at 559.050 kb on + strand, within CCNA_00539at 559.080 kb on - strand, within CCNA_00539at 559.081 kb on + strand, within CCNA_00539at 559.089 kb on - strand, within CCNA_00539at 559.089 kb on - strand, within CCNA_00539at 559.089 kb on - strand, within CCNA_00539at 559.109 kb on - strand, within CCNA_00539at 559.169 kb on + strand, within CCNA_00539at 559.178 kb on - strand, within CCNA_00539at 559.201 kb on - strand, within CCNA_00539at 559.216 kb on + strand, within CCNA_00539

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Doxycycline hyclate 0.0001 mg/ml
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556,087 + -2.1
556,109 + -0.2
556,142 - -0.0
556,226 - +0.4
556,232 + +1.2
556,289 + +1.1
556,297 - -1.1
556,418 + -0.9
556,440 + +0.7
556,448 - +3.3
556,507 - +0.9
556,509 + -0.3
556,612 + CCNA_00538 0.10 +1.4
556,612 + CCNA_00538 0.10 -0.6
556,615 - CCNA_00538 0.11 -2.0
556,624 + CCNA_00538 0.11 +0.0
556,689 + CCNA_00538 0.15 +0.7
556,689 + CCNA_00538 0.15 +1.1
556,689 + CCNA_00538 0.15 +0.8
556,697 - CCNA_00538 0.15 -0.4
556,721 - CCNA_00538 0.17 +0.9
556,738 + CCNA_00538 0.17 +0.9
556,738 + CCNA_00538 0.17 -2.6
556,780 + CCNA_00538 0.20 +1.1
556,788 - CCNA_00538 0.20 -1.2
556,804 + CCNA_00538 0.21 +1.5
556,804 + CCNA_00538 0.21 +0.5
556,812 - CCNA_00538 0.22 +1.0
556,817 - +2.3
556,838 + CCNA_00538 0.23 +1.3
556,838 + CCNA_00538 0.23 +0.6
556,838 + CCNA_00538 0.23 +0.3
556,838 + CCNA_00538 0.23 -0.2
556,838 + CCNA_00538 0.23 -1.6
556,838 + CCNA_00538 0.23 +3.6
556,840 + CCNA_00538 0.23 -0.6
556,846 - CCNA_00538 0.23 -1.0
556,896 + CCNA_00538 0.26 -0.0
556,925 + CCNA_00538 0.28 +0.2
556,933 + +2.3
556,935 - CCNA_00538 0.28 +2.9
556,941 - CCNA_00538 0.29 -0.7
556,941 - CCNA_00538 0.29 -1.6
556,980 + CCNA_00538 0.31 +1.4
556,985 + CCNA_00538 0.31 +1.0
556,988 - CCNA_00538 0.31 -0.3
556,990 + CCNA_00538 0.31 +1.4
557,002 + CCNA_00538 0.32 +1.0
557,028 + CCNA_00538 0.34 +0.5
557,062 + CCNA_00538 0.36 +0.5
557,070 - CCNA_00538 0.36 +0.7
557,124 + CCNA_00538 0.39 +0.2
557,154 - CCNA_00538 0.41 -1.0
557,173 + CCNA_00538 0.42 +0.5
557,181 - CCNA_00538 0.42 -1.3
557,184 + CCNA_00538 0.42 -0.2
557,194 - CCNA_00538 0.43 -1.2
557,194 - CCNA_00538 0.43 +1.6
557,236 + CCNA_00538 0.45 -0.4
557,236 + CCNA_00538 0.45 +0.3
557,236 + CCNA_00538 0.45 -1.1
557,244 - CCNA_00538 0.46 -0.1
557,254 + CCNA_00538 0.46 +1.3
557,262 - CCNA_00538 0.47 -0.8
557,269 + CCNA_00538 0.47 -0.2
557,269 + CCNA_00538 0.47 -0.3
557,284 - CCNA_00538 0.48 -0.7
557,302 - CCNA_00538 0.49 -1.3
557,309 + CCNA_00538 0.49 +0.5
557,339 - CCNA_00538 0.51 +0.2
557,392 + CCNA_00538 0.54 -1.2
557,404 + CCNA_00538 0.55 -0.6
557,462 + CCNA_00538 0.58 -0.3
557,491 - CCNA_00538 0.59 +0.3
557,512 + CCNA_00538 0.61 +0.9
557,520 + CCNA_00538 0.61 -0.3
557,541 + CCNA_00538 0.62 +0.3
557,549 - CCNA_00538 0.63 +1.2
557,549 - CCNA_00538 0.63 -0.5
557,575 - CCNA_00538 0.64 +0.6
557,662 - CCNA_00538 0.69 -1.0
557,698 + CCNA_00538 0.71 +0.8
557,711 - CCNA_00538 0.72 +0.9
557,714 + CCNA_00538 0.72 -1.9
557,756 + CCNA_00538 0.74 +1.6
557,766 + CCNA_00538 0.75 -0.6
557,787 - CCNA_00538 0.76 +0.6
557,788 + CCNA_00538 0.76 +2.2
557,788 + CCNA_00538 0.76 +0.5
557,796 - CCNA_00538 0.76 -0.9
557,884 + CCNA_00538 0.81 +0.3
557,887 + CCNA_00538 0.81 +0.6
557,903 + CCNA_00538 0.82 +0.6
557,963 - CCNA_00538 0.86 -1.0
558,032 + CCNA_00538 0.89 +0.2
558,035 - CCNA_00538 0.90 -0.9
558,039 + CCNA_00538 0.90 -0.2
558,040 - CCNA_00538 0.90 +1.0
558,045 + +1.1
558,050 + +0.3
558,053 - +0.8
558,092 - -1.0
558,118 + +0.3
558,123 - -1.1
558,132 + -0.5
558,133 + -0.4
558,146 - +0.6
558,162 + +1.1
558,163 + -0.0
558,172 + -0.4
558,190 + +1.6
558,192 + +0.5
558,200 - +1.1
558,234 - +1.1
558,280 + +0.1
558,292 - +0.6
558,340 + +0.3
558,340 + +1.1
558,340 + +1.9
558,340 + +0.7
558,340 + -2.2
558,340 + -1.4
558,340 + +0.1
558,340 + +0.9
558,346 + -0.6
558,348 - +1.5
558,348 - +0.5
558,348 - +0.2
558,348 - +2.6
558,348 - +1.3
558,348 - -0.3
558,354 - -1.1
558,387 - +0.8
558,406 + CCNA_00539 0.11 -0.9
558,500 + CCNA_00539 0.17 -0.5
558,500 + CCNA_00539 0.17 +0.5
558,500 + CCNA_00539 0.17 -0.8
558,500 + CCNA_00539 0.17 -0.4
558,502 - CCNA_00539 0.17 -1.0
558,508 - CCNA_00539 0.18 -2.3
558,565 + CCNA_00539 0.22 +0.8
558,582 + CCNA_00539 0.23 -1.9
558,582 + CCNA_00539 0.23 -0.2
558,582 + CCNA_00539 0.23 +0.3
558,582 + CCNA_00539 0.23 -0.2
558,590 - CCNA_00539 0.23 -0.5
558,590 - CCNA_00539 0.23 +0.8
558,608 + CCNA_00539 0.25 -1.0
558,637 - CCNA_00539 0.27 +0.8
558,683 - CCNA_00539 0.30 -0.6
558,684 + CCNA_00539 0.30 -1.0
558,692 - CCNA_00539 0.30 -1.6
558,709 + CCNA_00539 0.31 +0.4
558,709 + CCNA_00539 0.31 -1.2
558,712 - CCNA_00539 0.32 -1.0
558,717 - CCNA_00539 0.32 +0.6
558,741 + CCNA_00539 0.34 -1.4
558,741 + CCNA_00539 0.34 -0.8
558,749 - CCNA_00539 0.34 -1.2
558,820 - CCNA_00539 0.39 +1.8
558,834 + CCNA_00539 0.40 +0.0
558,841 + CCNA_00539 0.41 -1.0
558,850 + CCNA_00539 0.41 +0.2
558,857 - CCNA_00539 0.42 -0.7
558,951 + CCNA_00539 0.48 -1.0
558,959 - CCNA_00539 0.49 +1.5
558,959 - CCNA_00539 0.49 +1.2
558,967 - CCNA_00539 0.49 +0.4
558,983 + CCNA_00539 0.50 +0.4
559,009 + CCNA_00539 0.52 -0.8
559,017 - CCNA_00539 0.53 -0.3
559,022 - CCNA_00539 0.53 -1.5
559,023 + CCNA_00539 0.53 +1.2
559,030 + CCNA_00539 0.53 -0.9
559,038 - CCNA_00539 0.54 +3.9
559,050 + CCNA_00539 0.55 +0.3
559,080 - CCNA_00539 0.57 +0.1
559,081 + CCNA_00539 0.57 +0.1
559,089 - CCNA_00539 0.57 +2.6
559,089 - CCNA_00539 0.57 -0.4
559,089 - CCNA_00539 0.57 +0.0
559,109 - CCNA_00539 0.59 -0.5
559,169 + CCNA_00539 0.63 -2.2
559,178 - CCNA_00539 0.64 -1.2
559,201 - CCNA_00539 0.65 -1.6
559,216 + CCNA_00539 0.66 +1.3

Or see this region's nucleotide sequence