Experiment: L-Proline (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS30030 and BPHYT_RS30035 are separated by 116 nucleotides BPHYT_RS30035 and BPHYT_RS30040 are separated by 27 nucleotides BPHYT_RS30040 and BPHYT_RS30045 are separated by 382 nucleotides
BPHYT_RS30030: BPHYT_RS30030 - metallophosphoesterase, at 2,293,160 to 2,294,260
_RS30030
BPHYT_RS30035: BPHYT_RS30035 - hypothetical protein, at 2,294,377 to 2,294,943
_RS30035
BPHYT_RS30040: BPHYT_RS30040 - hypothetical protein, at 2,294,971 to 2,295,534
_RS30040
BPHYT_RS30045: BPHYT_RS30045 - ATPase AAA, at 2,295,917 to 2,297,293
_RS30045
Position (kb)
2294
2295
2296 Strain fitness (log2 ratio)
-1
0
1 at 2294.120 kb on - strand, within BPHYT_RS30030 at 2294.264 kb on + strand at 2294.265 kb on - strand at 2294.378 kb on + strand at 2294.958 kb on - strand at 2294.977 kb on - strand at 2295.418 kb on - strand, within BPHYT_RS30040 at 2295.618 kb on + strand at 2295.918 kb on + strand at 2295.918 kb on + strand at 2295.919 kb on - strand at 2296.222 kb on - strand, within BPHYT_RS30045 at 2296.479 kb on - strand, within BPHYT_RS30045
Per-strain Table
Position Strand Gene LocusTag Fraction L-Proline (N) remove 2,294,120 - BPHYT_RS30030 0.87 -0.3 2,294,264 + +0.1 2,294,265 - -0.2 2,294,378 + -0.6 2,294,958 - +0.7 2,294,977 - -0.8 2,295,418 - BPHYT_RS30040 0.79 +0.9 2,295,618 + +0.1 2,295,918 + -0.1 2,295,918 + -0.1 2,295,919 - -0.3 2,296,222 - BPHYT_RS30045 0.22 +0.5 2,296,479 - BPHYT_RS30045 0.41 +0.8
Or see this region's nucleotide sequence