Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS29310

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS29305 and BPHYT_RS29310 are separated by 98 nucleotidesBPHYT_RS29310 and BPHYT_RS29315 are separated by 103 nucleotides BPHYT_RS29305: BPHYT_RS29305 - LysR family transcriptional regulator, at 2,130,874 to 2,131,794 _RS29305 BPHYT_RS29310: BPHYT_RS29310 - oxidoreductase, at 2,131,893 to 2,132,771 _RS29310 BPHYT_RS29315: BPHYT_RS29315 - LysR family transcriptional regulator, at 2,132,875 to 2,133,774 _RS29315 Position (kb) 2131 2132 2133Strain fitness (log2 ratio) -1 0 1at 2130.991 kb on - strand, within BPHYT_RS29305at 2131.841 kb on + strandat 2131.879 kb on + strandat 2132.570 kb on + strand, within BPHYT_RS29310at 2132.571 kb on - strand, within BPHYT_RS29310

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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2,130,991 - BPHYT_RS29305 0.13 +0.2
2,131,841 + -0.1
2,131,879 + +0.2
2,132,570 + BPHYT_RS29310 0.77 +0.6
2,132,571 - BPHYT_RS29310 0.77 +1.1

Or see this region's nucleotide sequence